HG10012401.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012401.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr01: 20811018 .. 20811446 (-)
Sequence length	429
RNA-Seq Expression	HG10012401.1
Synteny	HG10012401.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGATCAGCGATCCGGTTGATCAAAGACAGAGCATTACTAGTCAACTGCCCAATGTTAACAATCCTAGTCCTAACTGCGGCCTTAACGCCGCCGTTCACCGCCTTCCCCTGAAACCCTTCGCTACAAGTAGTCTCATCGGTGAGGGCGGCGCTGACCCAAGTTTGAACATTGCTCATAACGAGATCAAAATCGCGGCCACGACGGAGCTTCGGCATCTCGGAAATGGAGGCGGCAAGGGAGTCAACAGAGTCACTCAGTTCTTCCAAACAGTCGTTAAGAGCAGAGACATCTCTGGAGGGGAGGCCGTGGGCGTGGGAAAGCTTGAGGATTTGGGTGGCGGCGGACTTGACGGAGGAGAGAGAGACGGAGAGGGCGGTGGTGGCCAAAAGGCGAGGGCTTGTTTGGATGGCATTAGCGTGGACTGA

mRNA sequence

ATGCAGATCAGCGATCCGGTTGATCAAAGACAGAGCATTACTAGTCAACTGCCCAATGTTAACAATCCTAGTCCTAACTGCGGCCTTAACGCCGCCGTTCACCGCCTTCCCCTGAAACCCTTCGCTACAAGTAGTCTCATCGGTGAGGGCGGCGCTGACCCAAGTTTGAACATTGCTCATAACGAGATCAAAATCGCGGCCACGACGGAGCTTCGGCATCTCGGAAATGGAGGCGGCAAGGGAGTCAACAGAGTCACTCAGTTCTTCCAAACAGTCGTTAAGAGCAGAGACATCTCTGGAGGGGAGGCCGTGGGCGTGGGAAAGCTTGAGGATTTGGGTGGCGGCGGACTTGACGGAGGAGAGAGAGACGGAGAGGGCGGTGGTGGCCAAAAGGCGAGGGCTTGTTTGGATGGCATTAGCGTGGACTGA

Coding sequence (CDS)

ATGCAGATCAGCGATCCGGTTGATCAAAGACAGAGCATTACTAGTCAACTGCCCAATGTTAACAATCCTAGTCCTAACTGCGGCCTTAACGCCGCCGTTCACCGCCTTCCCCTGAAACCCTTCGCTACAAGTAGTCTCATCGGTGAGGGCGGCGCTGACCCAAGTTTGAACATTGCTCATAACGAGATCAAAATCGCGGCCACGACGGAGCTTCGGCATCTCGGAAATGGAGGCGGCAAGGGAGTCAACAGAGTCACTCAGTTCTTCCAAACAGTCGTTAAGAGCAGAGACATCTCTGGAGGGGAGGCCGTGGGCGTGGGAAAGCTTGAGGATTTGGGTGGCGGCGGACTTGACGGAGGAGAGAGAGACGGAGAGGGCGGTGGTGGCCAAAAGGCGAGGGCTTGTTTGGATGGCATTAGCGTGGACTGA

Protein sequence

MQISDPVDQRQSITSQLPNVNNPSPNCGLNAAVHRLPLKPFATSSLIGEGGADPSLNIAHNEIKIAATTELRHLGNGGGKGVNRVTQFFQTVVKSRDISGGEAVGVGKLEDLGGGGLDGGERDGEGGGGQKARACLDGISVD

Homology

[Close]

BLAST of HG10012401.1 vs. NCBI nr
Match: KAA0067677.1 (hypothetical protein E6C27_scaffold70G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 5.4e-50
Identity = 108/142 (76.06%), Postives = 122/142 (85.92%), Query Frame = 0


Query: 1   MQISDPVDQRQSITSQLPNVNNPSPNCGLNAAVHRLPLKPFATSSLIGEGGADPSLNIAH 60
           MQISDP++QRQSITSQL NV+NP+PN  LNA++HRLPLKPFAT   IG+ GA+P LNI H
Sbjct: 1   MQISDPINQRQSITSQLRNVDNPTPNRSLNASLHRLPLKPFATRGFIGQSGANPCLNITH 60

Query: 61  NEIKIAATTELRHLGNGGGKGVNRVTQFFQTVVKSRDISGGEAVGVGKLEDLGGGGLDGG 120
            EI+IAA TELRHLGNG  +GV+RVTQFFQTVVKSRDISGGEA+GV KLEDL GGGLDGG
Sbjct: 61  CEIEIAA-TELRHLGNGSSEGVDRVTQFFQTVVKSRDISGGEAMGVRKLEDLSGGGLDGG 120

Query: 121 ERDGEGGGGQKARACLDGISVD 143
           E +GE GGGQKA  CLDGI +D
Sbjct: 121 EGNGESGGGQKAGTCLDGIGMD 141

[Close]

BLAST of HG10012401.1 vs. NCBI nr
Match: KAA0067676.1 (hypothetical protein E6C27_scaffold70G00450 [Cucumis melo var. makuwa] >TYK23680.1 hypothetical protein E5676_scaffold577G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 194.9 bits (494), Expect = 4.7e-46
Identity = 102/142 (71.83%), Postives = 117/142 (82.39%), Query Frame = 0


Query: 1   MQISDPVDQRQSITSQLPNVNNPSPNCGLNAAVHRLPLKPFATSSLIGEGGADPSLNIAH 60
           MQI + ++QRQSIT QL NV NP+PN  LNA++HRLPLKPFAT   IG+ GA+P LNI H
Sbjct: 1   MQIINSINQRQSITRQLRNVGNPTPNRSLNASLHRLPLKPFATCGFIGQSGANPCLNITH 60

Query: 61  NEIKIAATTELRHLGNGGGKGVNRVTQFFQTVVKSRDISGGEAVGVGKLEDLGGGGLDGG 120
            E++IAA TELRHLGNG  +GV+RVTQFFQTVVKSR ISGGEA+GV KLEDL GGGLDGG
Sbjct: 61  CELEIAA-TELRHLGNGSSEGVDRVTQFFQTVVKSRHISGGEAMGVRKLEDLSGGGLDGG 120

Query: 121 ERDGEGGGGQKARACLDGISVD 143
           E +GE GGGQKA  CLDGI +D
Sbjct: 121 EGNGESGGGQKAGTCLDGIGMD 141

[Close]

BLAST of HG10012401.1 vs. NCBI nr
Match: PON87359.1 (hypothetical protein TorRG33x02_168510 [Trema orientale])

HSP 1 Score: 55.1 bits (131), Expect = 5.8e-04
Identity = 48/142 (33.80%), Postives = 72/142 (50.70%), Query Frame = 0


Query: 7   VDQRQSITSQLPNVNNPSPNCGLNAAVHRLPLKPFATSSLIGEGGADPSLNIAHNEIKIA 66
           VD+R+ I S   ++  P+ + GL+ AV  + L+   T  LIGE GA P L++AH E +  
Sbjct: 2   VDEREGIASVFLHLVGPADDVGLHRAVADV-LEAVRTGLLIGESGAHPRLDVAHLEPERL 61

Query: 67  ------ATTELRHLGNGGGKGVNRVTQFFQTVVK---SRDISGGEAVGV-GKLEDLGGGG 126
                 A  E+ HL       V+ V +  + VV+      + GG  VG+ G + D+GG  
Sbjct: 62  PPGAGNAGVEVAHLAERAADLVDGVAEVGEAVVEGGGGAGVGGGAVVGLAGDVGDVGGHV 121

Query: 127 LDGGERDGEGGGGQKARACLDG 139
           L  GE  G+GG G+ +R    G
Sbjct: 122 LGLGEAHGDGGAGELSRVPTHG 142

[Close]

BLAST of HG10012401.1 vs. ExPASy TrEMBL
Match: A0A5A7VKH2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold70G00470 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.6e-50
Identity = 108/142 (76.06%), Postives = 122/142 (85.92%), Query Frame = 0


Query: 1   MQISDPVDQRQSITSQLPNVNNPSPNCGLNAAVHRLPLKPFATSSLIGEGGADPSLNIAH 60
           MQISDP++QRQSITSQL NV+NP+PN  LNA++HRLPLKPFAT   IG+ GA+P LNI H
Sbjct: 1   MQISDPINQRQSITSQLRNVDNPTPNRSLNASLHRLPLKPFATRGFIGQSGANPCLNITH 60

Query: 61  NEIKIAATTELRHLGNGGGKGVNRVTQFFQTVVKSRDISGGEAVGVGKLEDLGGGGLDGG 120
            EI+IAA TELRHLGNG  +GV+RVTQFFQTVVKSRDISGGEA+GV KLEDL GGGLDGG
Sbjct: 61  CEIEIAA-TELRHLGNGSSEGVDRVTQFFQTVVKSRDISGGEAMGVRKLEDLSGGGLDGG 120

Query: 121 ERDGEGGGGQKARACLDGISVD 143
           E +GE GGGQKA  CLDGI +D
Sbjct: 121 EGNGESGGGQKAGTCLDGIGMD 141

[Close]

BLAST of HG10012401.1 vs. ExPASy TrEMBL
Match: A0A0A0L9G9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176240 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.9e-47
Identity = 104/142 (73.24%), Postives = 118/142 (83.10%), Query Frame = 0


Query: 1   MQISDPVDQRQSITSQLPNVNNPSPNCGLNAAVHRLPLKPFATSSLIGEGGADPSLNIAH 60
           MQIS P++QRQSITSQL NV+N SPN  LNA+VHRLPLKPFAT   I + GA+P LNI H
Sbjct: 1   MQISYPINQRQSITSQLRNVDNLSPNRTLNASVHRLPLKPFATCGFIRQSGANPCLNITH 60

Query: 61  NEIKIAATTELRHLGNGGGKGVNRVTQFFQTVVKSRDISGGEAVGVGKLEDLGGGGLDGG 120
            E++I  +TELRHLGNG  +GV+RVTQFFQ VVKSRDISGGEA+GV KLEDL GGGLDGG
Sbjct: 61  CEVEI-GSTELRHLGNGSSEGVDRVTQFFQAVVKSRDISGGEAMGVRKLEDLSGGGLDGG 120

Query: 121 ERDGEGGGGQKARACLDGISVD 143
           E +GEGGGGQKA  CLDGI +D
Sbjct: 121 EGNGEGGGGQKAGTCLDGIGMD 141

[Close]

BLAST of HG10012401.1 vs. ExPASy TrEMBL
Match: A0A5A7VMC4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00460 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.3e-46
Identity = 102/142 (71.83%), Postives = 117/142 (82.39%), Query Frame = 0


Query: 1   MQISDPVDQRQSITSQLPNVNNPSPNCGLNAAVHRLPLKPFATSSLIGEGGADPSLNIAH 60
           MQI + ++QRQSIT QL NV NP+PN  LNA++HRLPLKPFAT   IG+ GA+P LNI H
Sbjct: 1   MQIINSINQRQSITRQLRNVGNPTPNRSLNASLHRLPLKPFATCGFIGQSGANPCLNITH 60

Query: 61  NEIKIAATTELRHLGNGGGKGVNRVTQFFQTVVKSRDISGGEAVGVGKLEDLGGGGLDGG 120
            E++IAA TELRHLGNG  +GV+RVTQFFQTVVKSR ISGGEA+GV KLEDL GGGLDGG
Sbjct: 61  CELEIAA-TELRHLGNGSSEGVDRVTQFFQTVVKSRHISGGEAMGVRKLEDLSGGGLDGG 120

Query: 121 ERDGEGGGGQKARACLDGISVD 143
           E +GE GGGQKA  CLDGI +D
Sbjct: 121 EGNGESGGGQKAGTCLDGIGMD 141

[Close]

BLAST of HG10012401.1 vs. ExPASy TrEMBL
Match: A0A0A0L5L7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175990 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.0e-46
Identity = 102/142 (71.83%), Postives = 118/142 (83.10%), Query Frame = 0


Query: 1   MQISDPVDQRQSITSQLPNVNNPSPNCGLNAAVHRLPLKPFATSSLIGEGGADPSLNIAH 60
           MQI++ ++QRQS+TSQL NV+N SPN  LNA+VHRLPLKPFAT   I + GA+P LNI H
Sbjct: 1   MQITNSINQRQSVTSQLRNVDNLSPNRTLNASVHRLPLKPFATCGFIRQSGANPCLNITH 60

Query: 61  NEIKIAATTELRHLGNGGGKGVNRVTQFFQTVVKSRDISGGEAVGVGKLEDLGGGGLDGG 120
            E++I A TELRHLGNG  +GV+RVTQFFQ VVKSRDISGGEA+GV KLEDL GGGLDGG
Sbjct: 61  CEVEIGA-TELRHLGNGSSEGVDRVTQFFQAVVKSRDISGGEAMGVRKLEDLSGGGLDGG 120

Query: 121 ERDGEGGGGQKARACLDGISVD 143
           E +GEGGGGQKA  CLDGI +D
Sbjct: 121 EGNGEGGGGQKAGTCLDGIGMD 141

[Close]

BLAST of HG10012401.1 vs. ExPASy TrEMBL
Match: A0A2P5EPC4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_168510 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-04
Identity = 48/142 (33.80%), Postives = 72/142 (50.70%), Query Frame = 0


Query: 7   VDQRQSITSQLPNVNNPSPNCGLNAAVHRLPLKPFATSSLIGEGGADPSLNIAHNEIKIA 66
           VD+R+ I S   ++  P+ + GL+ AV  + L+   T  LIGE GA P L++AH E +  
Sbjct: 2   VDEREGIASVFLHLVGPADDVGLHRAVADV-LEAVRTGLLIGESGAHPRLDVAHLEPERL 61

Query: 67  ------ATTELRHLGNGGGKGVNRVTQFFQTVVK---SRDISGGEAVGV-GKLEDLGGGG 126
                 A  E+ HL       V+ V +  + VV+      + GG  VG+ G + D+GG  
Sbjct: 62  PPGAGNAGVEVAHLAERAADLVDGVAEVGEAVVEGGGGAGVGGGAVVGLAGDVGDVGGHV 121

Query: 127 LDGGERDGEGGGGQKARACLDG 139
           L  GE  G+GG G+ +R    G
Sbjct: 122 LGLGEAHGDGGAGELSRVPTHG 142

The following BLAST results are available for this feature:

BLAST of HG10012401.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067677.1	5.4e-50	76.06	hypothetical protein E6C27_scaffold70G00470 [Cucumis melo var. makuwa]	[more]
KAA0067676.1	4.7e-46	71.83	hypothetical protein E6C27_scaffold70G00450 [Cucumis melo var. makuwa] >TYK23680...	[more]
PON87359.1	5.8e-04	33.80	hypothetical protein TorRG33x02_168510 [Trema orientale]	[more]

BLAST of HG10012401.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10012401.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VKH2	2.6e-50	76.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0L9G9	7.9e-47	73.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176240 PE=4 SV=1	[more]
A0A5A7VMC4	2.3e-46	71.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L5L7	3.0e-46	71.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175990 PE=4 SV=1	[more]
A0A2P5EPC4	2.8e-04	33.80	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_168510 PE=4 SV...	[more]

BLAST of HG10012401.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..142

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10012401	HG10012401	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10012401.1-cds	HG10012401.1-cds-Chr01:20811018..20811446	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10012401.1	HG10012401.1-protein	polypeptide