HG10012272.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012272.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr01: 19648553 .. 19654005 (-)
Sequence length	426
RNA-Seq Expression	HG10012272.1
Synteny	HG10012272.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATCGGTCCAGCCTCGGTAAGACGTCAAATCATGTTGGGCTGGCCCAGATAGAGTAATGGAAGATGAACCGAATCTTTAGGATAAAGGCTTCAATCAGGGGTTTAGATTTGTCTGGGGTTTGTTTGGATTGTTGTTACTTTTAAATTATCAGATTATAGATATAATAACTAAATTGACCTAATATTATTTTTTTGAATAAAATTTATAATTATTAAATAATGGTTTAAAAGAGATATATAAAATAAATCTTAATTTTGAAGGGTAAAATTAAAAATTAAAAAATTATTAAAAATTGCATCTGTAAATAACTGATTTTAAAAAGGTGTGAAATGAACAAAATAATAATAATAATAATAATCTTTTATAATGACTTCTATCACTACCAAGATTAACTTTCAAACGCACTTGAATCACTTTAGAATTTATGGAAAATATGCATTCTTAGTTTTATGGTCGATGATATGCTTATTTTTACCTAAACTTTTTATTTCATCAATTTGAACTATAATTTAAATACGTATTACATTTTTATTTATTATTTAGTTTCTTCAAAAACTTACTAATTTAGTCCTGATTAAGTTCTGCACAAATTTAAGTTTGATTCATATACAAGATAGACCATTAAATAACTCGATTAAAACTTTCAATTCTAACTCCCCAAAAAAAAACCAGCTCCAATAGCCAGTTTTTTTAGTCCAAAATTCTATGAAACATTGTTTGATAAGAATATTTTCAATGTTTTTCCAACCAAATATAAGATAAAAATTATAACATTTATCCGGATTTGATAAAATTAAAAGTTAATGTGATTTGTATTTAACTTTGTGGAATATTTGAGAATTATTAAACCCAATACACATCCTGAGAGAAATTCCAAAACTAGTGTAATTCTATATACTCCTAGAATTAACAAATCATATACAATATATGACATTCCAATCATAAGTTACATAAACCACTTCAATTTCTATGGTCGAGCTCACACCCACAACATTTTTTTTCCCCTTTAACATAGTACATTTTTCTTTATCAAAGTAAATAAATAAATGGACACCAATGCAAAGCCAAACACAACAATATGGTTGAAAATCAACCACATGTGTCGATTGTGCAATCTTTTTCTCTACTCTTTTCCTTTAACAATCTCGTACCATAGATAGGCATGTTGCTTTTTTTTCAACCCATTAATTCTTGTGGTAATATCGACAAAATTTCATCAATTCCATCCTATTCAAACTCACATAATGAATTTGTGTATTAAATTCATAATGTTATGATTGGTAGGTATATATTCAAATTATCGGAGAGACACTTGCTAAACTTTTTTTTTTAATCTAGACACAAAATTGAAAGTTTAAGATTCTATTATACATAAAATTTAAATTTATATCTAATAAATTAGTTAATTTTTAAATTACTTAAATTTCTCATAGACTTATTAAACACAAAATTGAAAGTTTAAATCTATATCTATCCTATCTAAAAGGGGCTAAGAGGGATAAACTTTTGATTTTCCTTTCTACTCCTTCTAGTTGATAGTCAAAGAAATATCTTAGTATTTTCACATTCAAATCATTAAATAATTTTTTTCCTATTTGTTTCAAGTTAAATGAGTAGATATTTTTTTTAAAAAAATCTATCTAAATTTTTTGATTTTTTTCACGCTAAATGAACAGATTTTTTTTTTAAAAAAAAACTAAAACTATCTAATTTTTTTTCCAATTTGCTTCACGTTAAAGGAGTAGATATTCAAACAAAAAAAATTGTCTGTTTTTTTTTCTTATTTGTTTCACGTTACATGAGGAAATATTAAAAAAAAGTTATATAAAATTTTCTTAACATATAAGGTTCACGTCAAATGAGTAGATATTGAAAAAAAAAAAAATCTATCTAAATTGATGTTAAAAAAAATCTCTCTATCTATATAATTCACATTAAAATAAAAATAAAACAAATCACATTCTATCCATTTACAGGAGTTAAATAATAGTTATAAATATATTATAGAAGTAGGTTTTTTATTTCAAATAAGAGTGATTAACTTTTTTTTCTTATTATAAATGTAAATATTATTTAGTTTATTTGTAATTTTAATTTGAAAACTTAAGAAAAAAGTTTTAAAAAAACATATAAATTCAAATTCAGTTTGATTTAGATATCTTTCTTTAAAAAATATATATATATATAAAGAAATAAAATGATTATAAGTATAAGTCTTTTATTTTAACTTATATAAATACATTTCATTTTGCAACGTTACGAAATACGTGTAATGCACATAATTCTAACTAATAGTTCTAAAAGTTCATATACTAAATAAAGTAAACTTCAAAATTTAGCGATTAAACTTATAGTAAATTAAGTTTATTATTAAAACTAATTATATTAGAAAAATTCAACATTTTTTAAAAGAAATTATGAGAAAAAAAAATCCTTTTTAACTTTTATATAGTACTTGTGGATAGGCTTGGTTGTCGATTGATCATAATTATTATAGGAGAATTTTGTAAAGTGAAAATATAGTTATAAAAGAAGACAAAAGACCAAAAAGAAAAAGAAAAAAAAGTTCACGTGCCATAGCAACACAAGAGTAACCCGTGAGTGAATATTTTGGCACTGATTCAATCAGGGAGGCTTCACCATCAAACAAAACAAAACAATTCTTTTTCCTCTTATTTTTATATCTGCAAATCAAAATTGCTAAAGCACCCGTGACATGTTATTATTTGAAGGATTTAAAAACGTCACTTATTTTATATTATTTTCACAAAGAGTGGATGTAGAAATTTAAATTTTTAACTTATGCAAAATGTTATTAATTACATGTGTATTGGCATGCGTGTTTTGGATGTTTTACTGGTCCACTCCTTTAGTCCAACCTCTTCGTCGAAATTGACTTATATGAGAGTACTCACGTCGAAGTATTTAGTCAACTAAGTAAGAGAAGGGTTTAGAGTTTCTCTTTTAGAATTTACTTATTCCCTCTAGGATTGTCGAATGAGTCTATTTATAAGGTTGTTCCTCTGACATCTCCCTGAAGTTACGTGTAATGTCGGTAGTATTAGAACTAATGTTGTCCTTGAAGTTGTAGAGAGCTAGTACTATAGTCCGCTTAAATTACTTTTCGATTGGTATAAGTCCATCGGTTCGGTTAGTTGACTCAAAACTCGAAAGTGACTTTTTTCTTTTGAGATGTGCAGTTTCCCATGCTATCTCTCAATTTTTCTTGAACTTGGGCCTGCTCATAGGCTTTGGATCTTGCTTGGAATAACTTTTAACAACATTTTGAATTAATCATTCAATGTTTTTCTTAATAGTTAACAATTATAAGAGTGGACGATTTCTTTAGGATGATAATTGATGTCTTATCCACTAAATAATATTCGGATTAAGCAAATTCACAACTATCTGGTTATGTATTAATAATTCATTAGATAATTTTTTTACATAAATTACTAATGTTCAAATTAGAAAGAAAAAAATTGACATTCAATTTTTTAAAAAAATACAAACAAACATGCCCATATCCACTCCAAAATTTTGGCCAAGTCTCACAACATTATTTTATTGAAGATATCATGGAAGAAAATATTAGCCCCATATCTTTTTTCTTTTTCTTTTTCTTTTTTTCCTTTTTAATTGAATTTGGTGTTTTCATATAAATATAAGATTAAAAAAAATTGTAGCTCAAGGAAAATTTAAATCCTATAATAAGAAAGTATTATAGAAAGTCTGCATGTGGGGTCTTTTGGACATTTTGGGCCATTTGGCCGAATGATTGAAGTCTCACCTTCACATCAAAGGGCTCCCTAGTCTTTACATCTCTCTCTCCAATGTTATTATCATAGTTTTATTCTTTGTAAAGGCCAAACAAGAATCATAAAATAATTGACAAAATCAAAACAAGAAAGATGCTTACTAATTTGCTTTTAACTTATCATTCACTTATTTTATCCTTCAATAATGATTAATGAATTATTTGATATTTCATCAATATTTTATCGACATTTATTGAAATGATGGATTGGAATGTCGATAATGTGTTTTTTGGAGCTATTTTTTAAAACAAATTTTAAAAAACAAATATTTAACGTTTTTTAAACAGTTAACATATATTTTTGAATTTTTTTTAAGGAGTAGGATGTTTATTATTAATATTATATACATTTTTTTTTGTTTTTCTTTATGTTTCATTAATTTTTTTACAATATAATACAAATATCAATTCATTTCATCCCTCACCGGTGTTTAATGGCATGTTAGAAAGAGTGATAGATGGATTAAAAGTTCAAAAACATACTTGTAATTCACAAGTAGTCTTTGCAATTTATTCCAAAAAAAAAAAAACAAAGAAAAAAGAATGGTTAATTTACCATTTCCATCACTATATACTTTAAAGTTTTTTAATTGTTAGTCTTTATACTTTCAATTGTTCAATTCTAGTTTCTCTATTTTCAATAAATCTTAAATTTAGTCTCTCAAAGTTAATTTTTATCAATAATAATAATTTTCATGCAAGAATATACAATATGTGAATATTTTTTTAAAAAAAGTTGTATAGTAAAAATGCTAGTAAATAATTAGAAAAAAAATAAACTATAAAGAATCAATTGAAATTAAATTTAAAATTTATCGAAATAAATTAAACTTCAAATTAGAGGGAACAAAATCGTATTCTCTATAATTTATTTTTTAAAATACAAATCTCTGACATATGCAAATAATAACAGAGGGAGCATAATAATAATAACAATAATTATTATTATTATTATTATTATTATTATTATTATTTCTTAGACGTAGAAACCCTTCTAATCAAAACAAGCAAACAAAGAAGTCGATAGAACACAAAAAAGGCGATCAAAGCATAAACATTTGTCCACCGTTGATTCTCGTGAAGGCCTCTCTTAACCAACACATCTCCACCCGTAACCAAACACTCCCTTTCATTCTCTTCAAACCAAATGAAGCATCTAGAAACCAAGCACGAATATTCGTTGATAACCAATGCGTCAAGGGCATATTTGTACATTGACATGAAGTTCATAAACACCCAAAACTTAGGCAAGCTTTCTTGGGAGATGAAGTAGCCGGAGAAAAGGAAAAACGCGGCGAGGAGAACGGTCACCAGCGAGGTGCCGGCGATGAAATTGGGGGCGAGGGAGCTCAAGAAAAGGACGAAGGAATTGGCCATGAGAATGATGACCCAAATGACGAGCACGAAGTAGGCGAAAGCTTGCCACGTGGCGCAGAGGCCGACGAGGAAATAGACGGAGGCGGAGTAGATGACGGCGACGGCGAGGAGGTAAGGGAGGAAAACGAGGGTGTTGGCGATTATGTAGGAGGAGAGACGGTAGACGCCGGCGGAGGTTTCACGGAGGAGAATGGGGCGTTCGTTGAGGAAAATGGGGAGGGATTCGGTTGTGGAAGAGAGGAGGAATGTTAG

mRNA sequence

ATGGATGATCGGTCCAGCCTCGTTCATAAACACCCAAAACTTAGGCAAGCTTTCTTGGGAGATGAAGTAGCCGGAGAAAAGGAAAAACGCGGCGAGGAGAACGGTCACCAGCGAGGTGCCGGCGATGAAATTGGGGGCGAGGGAGCTCAAGAAAAGGACGAAGGAATTGGCCATGAGAATGATGACCCAAATGACGAGCACGAAGTAGGCGAAAGCTTGCCACGTGGCGCAGAGGCCGACGAGGAAATAGACGGAGGCGGAGTAGATGACGGCGACGGCGAGGAGGTAAGGGAGGAAAACGAGGGTGTTGGCGATTATGTAGGAGGAGAGACGGTAGACGCCGGCGGAGGTTTCACGGAGGAGAATGGGGCGTTCGTTGAGGAAAATGGGGAGGGATTCGGTTGTGGAAGAGAGGAGGAATGTTAG

Coding sequence (CDS)

ATGGATGATCGGTCCAGCCTCGTTCATAAACACCCAAAACTTAGGCAAGCTTTCTTGGGAGATGAAGTAGCCGGAGAAAAGGAAAAACGCGGCGAGGAGAACGGTCACCAGCGAGGTGCCGGCGATGAAATTGGGGGCGAGGGAGCTCAAGAAAAGGACGAAGGAATTGGCCATGAGAATGATGACCCAAATGACGAGCACGAAGTAGGCGAAAGCTTGCCACGTGGCGCAGAGGCCGACGAGGAAATAGACGGAGGCGGAGTAGATGACGGCGACGGCGAGGAGGTAAGGGAGGAAAACGAGGGTGTTGGCGATTATGTAGGAGGAGAGACGGTAGACGCCGGCGGAGGTTTCACGGAGGAGAATGGGGCGTTCGTTGAGGAAAATGGGGAGGGATTCGGTTGTGGAAGAGAGGAGGAATGTTAG

Protein sequence

MDDRSSLVHKHPKLRQAFLGDEVAGEKEKRGEENGHQRGAGDEIGGEGAQEKDEGIGHENDDPNDEHEVGESLPRGAEADEEIDGGGVDDGDGEEVREENEGVGDYVGGETVDAGGGFTEENGAFVEENGEGFGCGREEEC

Homology

The following BLAST results are available for this feature:

BLAST of HG10012272.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10012272.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10012272.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10012272.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..141

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10012272	HG10012272	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10012272.1-cds	HG10012272.1-cds-Chr01:19648553..19648956	CDS
HG10012272.1-cds	HG10012272.1-cds-Chr01:19653984..19654005	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10012272.1	HG10012272.1-protein	polypeptide