Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATTTCTTATGTGGTTGGTCTTAACGGTGAGGTGAAAATCGGAGCCATTGTTTGTGACTCAAAGGGTGAAATTATACTTGTCATGGAGAGACACTTTCCTTTGTCGGGGTCGGTTGAGCTTGCTGAGGCCATAACCATGTTTGAAGGTCTTTCTAGAGCTATTGAAGTTGACATCTCCTCCCTTTGGGCCGAAATTGATTCCACAGATCTTATGGAACCTTTTGGTTGGGAGAAATAG mRNA sequence ATTTCTTATGTGGTTGGTCTTAACGGTGAGGTGAAAATCGGAGCCATTGTTTGTGACTCAAAGGGTGAAATTATACTTGTCATGGAGAGACACTTTCCTTTGTCGGGGTCGGTTGAGCTTGCTGAGGCCATAACCATGTTTGAAGGTCTTTCTAGAGCTATTGAAGTTGACATCTCCTCCCTTTGGGCCGAAATTGATTCCACAGATCTTATGGAACCTTTTGGTTGGGAGAAATAG Coding sequence (CDS) ATTTCTTATGTGGTTGGTCTTAACGGTGAGGTGAAAATCGGAGCCATTGTTTGTGACTCAAAGGGTGAAATTATACTTGTCATGGAGAGACACTTTCCTTTGTCGGGGTCGGTTGAGCTTGCTGAGGCCATAACCATGTTTGAAGGTCTTTCTAGAGCTATTGAAGTTGACATCTCCTCCCTTTGGGCCGAAATTGATTCCACAGATCTTATGGAACCTTTTGGTTGGGAGAAATAG Protein sequence ISYVVGLNGEVKIGAIVCDSKGEIILVMERHFPLSGSVELAEAITMFEGLSRAIEVDISSLWAEIDSTDLMEPFGWEK
Homology
BLAST of HG10010660.1 vs. NCBI nr
Match: XP_038897425.1 (uncharacterized protein LOC120085494 [Benincasa hispida]) HSP 1 Score: 60.5 bits (145), Expect = 7.6e-06 Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 0
Query: 7 LNGEVKIGAIVCDSKGEIILVMERHFPLSGSVELAEAITMFEGLSRAIEVDISSLWAEID 66
L+G+V + AIVCDS +++L+ME HFPL GSV+LAEAI MF +S A++ I +++
Sbjct: 92 LDGKVIVDAIVCDSCVDVMLIMESHFPLMGSVDLAEAIAMFIWVSNALDSGIPLFGLKLN 151
Query: 67 ST 69
T
Sbjct: 152 PT 153
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038897425.1 | 7.6e-06 | 48.39 | uncharacterized protein LOC120085494 [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002156 | Ribonuclease H domain | PFAM | PF13456 | RVT_3 | coord: 11..71
e-value: 6.5E-8
score: 32.4 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| HG10010660 | HG10010660 | gene |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| HG10010660.1-cds | HG10010660.1-cds-Chr06:24555813..24556049 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| HG10010660.1 | HG10010660.1-protein | polypeptide |
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0004523 |
RNA-DNA hybrid ribonuclease activity |
|
