HG10010660 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10010660
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr06: 24555813 .. 24556049 (+)
RNA-Seq ExpressionHG10010660
SyntenyHG10010660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCTTATGTGGTTGGTCTTAACGGTGAGGTGAAAATCGGAGCCATTGTTTGTGACTCAAAGGGTGAAATTATACTTGTCATGGAGAGACACTTTCCTTTGTCGGGGTCGGTTGAGCTTGCTGAGGCCATAACCATGTTTGAAGGTCTTTCTAGAGCTATTGAAGTTGACATCTCCTCCCTTTGGGCCGAAATTGATTCCACAGATCTTATGGAACCTTTTGGTTGGGAGAAATAG

mRNA sequence

ATTTCTTATGTGGTTGGTCTTAACGGTGAGGTGAAAATCGGAGCCATTGTTTGTGACTCAAAGGGTGAAATTATACTTGTCATGGAGAGACACTTTCCTTTGTCGGGGTCGGTTGAGCTTGCTGAGGCCATAACCATGTTTGAAGGTCTTTCTAGAGCTATTGAAGTTGACATCTCCTCCCTTTGGGCCGAAATTGATTCCACAGATCTTATGGAACCTTTTGGTTGGGAGAAATAG

Coding sequence (CDS)

ATTTCTTATGTGGTTGGTCTTAACGGTGAGGTGAAAATCGGAGCCATTGTTTGTGACTCAAAGGGTGAAATTATACTTGTCATGGAGAGACACTTTCCTTTGTCGGGGTCGGTTGAGCTTGCTGAGGCCATAACCATGTTTGAAGGTCTTTCTAGAGCTATTGAAGTTGACATCTCCTCCCTTTGGGCCGAAATTGATTCCACAGATCTTATGGAACCTTTTGGTTGGGAGAAATAG

Protein sequence

ISYVVGLNGEVKIGAIVCDSKGEIILVMERHFPLSGSVELAEAITMFEGLSRAIEVDISSLWAEIDSTDLMEPFGWEK
Homology
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BLAST of HG10010660 vs. NCBI nr
Match: XP_038897425.1 (uncharacterized protein LOC120085494 [Benincasa hispida])

HSP 1 Score: 60.5 bits (145), Expect = 7.6e-06
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 7   LNGEVKIGAIVCDSKGEIILVMERHFPLSGSVELAEAITMFEGLSRAIEVDISSLWAEID 66
           L+G+V + AIVCDS  +++L+ME HFPL GSV+LAEAI MF  +S A++  I     +++
Sbjct: 92  LDGKVIVDAIVCDSCVDVMLIMESHFPLMGSVDLAEAIAMFIWVSNALDSGIPLFGLKLN 151

Query: 67  ST 69
            T
Sbjct: 152 PT 153

The following BLAST results are available for this feature:
BLAST of HG10010660 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038897425.17.6e-0648.39uncharacterized protein LOC120085494 [Benincasa hispida][more]
BLAST of HG10010660 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10010660 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10010660 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 11..71
e-value: 6.5E-8
score: 32.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10010660.1HG10010660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity