HG10008104.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008104.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr10: 19799752 .. 19800063 (-)
Sequence length	312
RNA-Seq Expression	HG10008104.1
Synteny	HG10008104.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTCAAGTCACTGAATGCATCCACAATGACGTTAACATTTGTATTCCTTGTCTGCATGGTTATTTTAGCACCATCAACGATGGCTGTAGTGCCATATCCATCAGTGCCACAAAATTTTCCTTTCTCTAGTTGTGTTCCATTTATTTTGGATGCGACATTGTGTGTGGTAGATGTGATCAAGTTTCCAATTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTTGAAGCTTAATGACTGTGCTCCTCAAATTTTCCAAAAGATTCCTCCTGCTGACATGGACGTGATTAAGAAGATTTGTGCTTTATAA

mRNA sequence

ATGGCGGTCAAGTCACTGAATGCATCCACAATGACGTTAACATTTGTATTCCTTGTCTGCATGGTTATTTTAGCACCATCAACGATGGCTGTAGTGCCATATCCATCAGTGCCACAAAATTTTCCTTTCTCTAGTTGTGTTCCATTTATTTTGGATGCGACATTGTGTGTGGTAGATGTGATCAAGTTTCCAATTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTTGAAGCTTAATGACTGTGCTCCTCAAATTTTCCAAAAGATTCCTCCTGCTGACATGGACGTGATTAAGAAGATTTGTGCTTTATAA

Coding sequence (CDS)

ATGGCGGTCAAGTCACTGAATGCATCCACAATGACGTTAACATTTGTATTCCTTGTCTGCATGGTTATTTTAGCACCATCAACGATGGCTGTAGTGCCATATCCATCAGTGCCACAAAATTTTCCTTTCTCTAGTTGTGTTCCATTTATTTTGGATGCGACATTGTGTGTGGTAGATGTGATCAAGTTTCCAATTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTTGAAGCTTAATGACTGTGCTCCTCAAATTTTCCAAAAGATTCCTCCTGCTGACATGGACGTGATTAAGAAGATTTGTGCTTTATAA

Protein sequence

MAVKSLNASTMTLTFVFLVCMVILAPSTMAVVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL

Homology

[Close]

BLAST of HG10008104.1 vs. NCBI nr
Match: KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 3.9e-34
Identity = 79/108 (73.15%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 1   MAVKSLNASTMTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATL 60
           MA +SLN S M L  VFLVC+ ILAPS     T A  P PSVPQNFPF  C PFIL+ATL
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 61  CVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 104
           CV DVIKFPIAPHPSCCKAI KLNDCAP+I+QKIP  DMDVIKKIC+L
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

[Close]

BLAST of HG10008104.1 vs. NCBI nr
Match: TYK10334.1 (hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.4e-28
Identity = 69/98 (70.41%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 11  MTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPI 70
           M L  VFLVC+ ILAPS     T A  P PSVPQNFPF  C PFIL+ATLCV  VIKFPI
Sbjct: 1   MKLVLVFLVCIAILAPSTTMAGTTAAAPSPSVPQNFPFLKCAPFILEATLCVTGVIKFPI 60

Query: 71  APHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 104
           APHPSCCKAI KL DCAP I+QKIP +DM+VIKK C+L
Sbjct: 61  APHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98

[Close]

BLAST of HG10008104.1 vs. NCBI nr
Match: KAA0050072.1 (hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK10333.1 hypothetical protein E5676_scaffold367G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-25
Identity = 68/108 (62.96%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MAVKSLNASTMTLTFVFLVCMVILAPSTMA------VVPYPSVPQNFPFSSCVPFILDAT 60
           MAVKSL AS +    VF+V + ILA S  A          PS+ QN  F SC PFI D T
Sbjct: 1   MAVKSLKASPIKSASVFIVSIAILAASVTAGRTVSSTTLDPSMSQNLSFFSCAPFIFDVT 60

Query: 61  LCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICA 103
           LC+VDV KFPI+PHP CCKAI KLNDCAP +FQ IPPADMDVIKKICA
Sbjct: 61  LCLVDVFKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKICA 108

[Close]

BLAST of HG10008104.1 vs. NCBI nr
Match: KAE8653023.1 (hypothetical protein Csa_023561, partial [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 2.6e-25
Identity = 67/107 (62.62%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 4   KSLNASTMTLTFVFLVCMVILAPSTMA-------VVPYPSVPQNFPFSSCVPFILDATLC 63
           KSL AS M L  VF+V + ILA S  A           PS+ Q+  F SC PFILDATLC
Sbjct: 1   KSLKASPMKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDATLC 60

Query: 64  VVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 104
           +VDV KFPIAPHP CCKAI KLNDCAP +FQ IP ADMDV+K ICAL
Sbjct: 61  LVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDVVKNICAL 107

[Close]

BLAST of HG10008104.1 vs. NCBI nr
Match: TYK10344.1 (hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 7.4e-25
Identity = 69/109 (63.30%), Postives = 81/109 (74.31%), Query Frame = 0


Query: 2   AVKSLNASTMTLTFVFLVCMVILAPS----TMAVVPYP---SVPQNFPFSSCVPFILDAT 61
           A KS +AST+ L  VFLVC+VILAPS    TMA  P P    + Q+  FS+C PFIL+AT
Sbjct: 3   AAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEAT 62

Query: 62  LCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 104
           +C+VDVIK P+APHPSCCKAI  LNDCAP+I+Q IP   MDVIKKIC L
Sbjct: 63  MCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIP--GMDVIKKICGL 109

[Close]

BLAST of HG10008104.1 vs. ExPASy TrEMBL
Match: A0A5A7U9A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00160 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 79/108 (73.15%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 1   MAVKSLNASTMTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATL 60
           MA +SLN S M L  VFLVC+ ILAPS     T A  P PSVPQNFPF  C PFIL+ATL
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 61  CVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 104
           CV DVIKFPIAPHPSCCKAI KLNDCAP+I+QKIP  DMDVIKKIC+L
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

[Close]

BLAST of HG10008104.1 vs. ExPASy TrEMBL
Match: A0A5D3CGK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00080 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.0e-29
Identity = 69/98 (70.41%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 11  MTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPI 70
           M L  VFLVC+ ILAPS     T A  P PSVPQNFPF  C PFIL+ATLCV  VIKFPI
Sbjct: 1   MKLVLVFLVCIAILAPSTTMAGTTAAAPSPSVPQNFPFLKCAPFILEATLCVTGVIKFPI 60

Query: 71  APHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 104
           APHPSCCKAI KL DCAP I+QKIP +DM+VIKK C+L
Sbjct: 61  APHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98

[Close]

BLAST of HG10008104.1 vs. ExPASy TrEMBL
Match: A0A5A7U2L3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00060 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.2e-26
Identity = 68/108 (62.96%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MAVKSLNASTMTLTFVFLVCMVILAPSTMA------VVPYPSVPQNFPFSSCVPFILDAT 60
           MAVKSL AS +    VF+V + ILA S  A          PS+ QN  F SC PFI D T
Sbjct: 1   MAVKSLKASPIKSASVFIVSIAILAASVTAGRTVSSTTLDPSMSQNLSFFSCAPFIFDVT 60

Query: 61  LCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICA 103
           LC+VDV KFPI+PHP CCKAI KLNDCAP +FQ IPPADMDVIKKICA
Sbjct: 61  LCLVDVFKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKICA 108

[Close]

BLAST of HG10008104.1 vs. ExPASy TrEMBL
Match: A0A5D3CGL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00200 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.6e-25
Identity = 69/109 (63.30%), Postives = 81/109 (74.31%), Query Frame = 0


Query: 2   AVKSLNASTMTLTFVFLVCMVILAPS----TMAVVPYP---SVPQNFPFSSCVPFILDAT 61
           A KS +AST+ L  VFLVC+VILAPS    TMA  P P    + Q+  FS+C PFIL+AT
Sbjct: 3   AAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEAT 62

Query: 62  LCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 104
           +C+VDVIK P+APHPSCCKAI  LNDCAP+I+Q IP   MDVIKKIC L
Sbjct: 63  MCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIP--GMDVIKKICGL 109

[Close]

BLAST of HG10008104.1 vs. ExPASy TrEMBL
Match: A0A0A0LTD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.7e-25
Identity = 70/110 (63.64%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 2   AVKSLNASTMTLTFVFLVCMVILAPS----TMAVVPYPSV----PQNFPFSSCVPFILDA 61
           A KS +AST+ L  VFLVC+VILAPS    TMA  P P +      +  FS+C PFIL+A
Sbjct: 3   ATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEA 62

Query: 62  TLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 104
           T+CVVDVIK P+A HPSCCKAI  LNDCAPQI+Q IP  DMDVIKKIC L
Sbjct: 63  TMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

The following BLAST results are available for this feature:

BLAST of HG10008104.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050069.1	3.9e-34	73.15	hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034...	[more]
TYK10334.1	1.4e-28	70.41	hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa]	[more]
KAA0050072.1	1.5e-25	62.96	hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK1033...	[more]
KAE8653023.1	2.6e-25	62.62	hypothetical protein Csa_023561, partial [Cucumis sativus]	[more]
TYK10344.1	7.4e-25	63.30	hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa]	[more]

BLAST of HG10008104.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008104.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9A1	1.9e-34	73.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CGK9	7.0e-29	70.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U2L3	7.2e-26	62.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CGL7	3.6e-25	63.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LTD6	4.7e-25	63.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1	[more]

BLAST of HG10008104.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10008104	HG10008104	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10008104.1-cds	HG10008104.1-cds-Chr10:19799752..19800063	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10008104.1	HG10008104.1-protein	polypeptide