HG10004392.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10004392.1
TypemRNA
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr08: 16576403 .. 16576813 (-)
Sequence length411
RNA-Seq ExpressionHG10004392.1
SyntenyHG10004392.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAACAGAGTCAGAGAGAGCTTGGCTATTTCTGTTATCAGCTTCAAAAAAGGTTGCCTGCCATGGCAGATTACACAGAACCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTCTCAGTGCAATTAATAAAGGAAGAGAAAAACAAATGGCCTTACCGACTCCGCTCCCTAATTAATACTTCACAGATACAGTATTCAATTATATTCCCTTCAATTAACCTAAACCTAACTTCAAATTACTTACCAAATCAAATATCTGCTCTTCCTCCTCCTTCTTCTTCACCGGAATTTCTCCCCGAAGCTCCGCCGCATGCCGCGTCGCCGATCACCGGACAAGAACAATCGAAAAGGCGTCCGATGTTCCTCTCCGATTCTCCGATCCTCTCTCGCTTATATCGTAATTGA

mRNA sequence

ATGGTGGAACAGAGTCAGAGAGAGCTTGGCTATTTCTGTTATCAGCTTCAAAAAAGGTTGCCTGCCATGGCAGATTACACAGAACCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTCTCAGTGCAATTAATAAAGGAAGAGAAAAACAAATGGCCTTACCGACTCCGCTCCCTAATTAATACTTCACAGATACAGTATTCAATTATATTCCCTTCAATTAACCTAAACCTAACTTCAAATTACTTACCAAATCAAATATCTGCTCTTCCTCCTCCTTCTTCTTCACCGGAATTTCTCCCCGAAGCTCCGCCGCATGCCGCGTCGCCGATCACCGGACAAGAACAATCGAAAAGGCGTCCGATGTTCCTCTCCGATTCTCCGATCCTCTCTCGCTTATATCGTAATTGA

Coding sequence (CDS)

ATGGTGGAACAGAGTCAGAGAGAGCTTGGCTATTTCTGTTATCAGCTTCAAAAAAGGTTGCCTGCCATGGCAGATTACACAGAACCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTCTCAGTGCAATTAATAAAGGAAGAGAAAAACAAATGGCCTTACCGACTCCGCTCCCTAATTAATACTTCACAGATACAGTATTCAATTATATTCCCTTCAATTAACCTAAACCTAACTTCAAATTACTTACCAAATCAAATATCTGCTCTTCCTCCTCCTTCTTCTTCACCGGAATTTCTCCCCGAAGCTCCGCCGCATGCCGCGTCGCCGATCACCGGACAAGAACAATCGAAAAGGCGTCCGATGTTCCTCTCCGATTCTCCGATCCTCTCTCGCTTATATCGTAATTGA

Protein sequence

MVEQSQRELGYFCYQLQKRLPAMADYTEPLSLSLSLSLSLSVQLIKEEKNKWPYRLRSLINTSQIQYSIIFPSINLNLTSNYLPNQISALPPPSSSPEFLPEAPPHAASPITGQEQSKRRPMFLSDSPILSRLYRN
Homology
The following BLAST results are available for this feature:
BLAST of HG10004392.1 vs.
Match NameE-valueIdentityDescription
BLAST of HG10004392.1 vs.
Match NameE-valueIdentityDescription
BLAST of HG10004392.1 vs.
Match NameE-valueIdentityDescription
BLAST of HG10004392.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..136

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
HG10004392HG10004392gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
HG10004392.1-cdsHG10004392.1-cds-Chr08:16576403..16576813CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
HG10004392.1HG10004392.1-proteinpolypeptide