HG10003104.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003104.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosome biogenesis protein WDR12 homolog
Location	Chr11: 17403660 .. 17404349 (-)
Sequence length	405
RNA-Seq Expression	HG10003104.1
Synteny	HG10003104.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTGATGGGGATTTTGAGGACACTTCTCGCCGAATTCAAGTGCGGTTTATCACGAAACTAAAGGCTCCTTTCAGAGTTCCAGCGAATGCCATTGCCATTCCCTCTAACCTAACCAGACTGGGTCTTTCCACCGTTGTTAACAATCTTATTTCAGCCGGTATGCTATCTGATCATGTCTACAATGTCTTCTGGTTATTTGGTGTTTGGGTGGAACTATTTTCTGAGCTTCATATAAACTTTATTTTTCAATAATTAAAATTATTACTTGATAGGGAATCCCGAGTGGGTAGAAGAACCATTTGATTTTCTAATTGATGGCGAGCTTGTCAGAATGTCACTGGAGAAATTCCTTCTTGCCAAGGGCATCTCAGCGGTAATATTTTAATTTGGGCGACTTGTATTTTTTATTTTTTATTTTTCAATGTTCAGCTCCAAAGATGTGTGGAAAGAAAATGAGAAACTTTAGAACCCTCAAAATATACAATTTGTTTAGATTTAATTTTGTTAGTTGAAGATTTTATCTGTTATTTTGGCATAAAATAGGAAAAAACATTGGAAATTGAGTACCTTAAGGCGGTTGCCCCACGAAGGGAGGAAGAGCCTTCTGTTCATGATGATTGGGTCAGTGCAGTTGATAAGTATTTGAATGCAACGTCTACTTTGTTATCTAGTAGTCATCTATAA

mRNA sequence

ATGGATATTGATGGGGATTTTGAGGACACTTCTCGCCGAATTCAAGTGCGGTTTATCACGAAACTAAAGGCTCCTTTCAGAGTTCCAGCGAATGCCATTGCCATTCCCTCTAACCTAACCAGACTGGGTCTTTCCACCGTTGTTAACAATCTTATTTCAGCCGGGAATCCCGAGTGGGTAGAAGAACCATTTGATTTTCTAATTGATGGCGAGCTTGTCAGAATGTCACTGGAGAAATTCCTTCTTGCCAAGGGCATCTCAGCGGAAAAAACATTGGAAATTGAGTACCTTAAGGCGGTTGCCCCACGAAGGGAGGAAGAGCCTTCTGTTCATGATGATTGGGTCAGTGCAGTTGATAAGTATTTGAATGCAACGTCTACTTTGTTATCTAGTAGTCATCTATAA

Coding sequence (CDS)

ATGGATATTGATGGGGATTTTGAGGACACTTCTCGCCGAATTCAAGTGCGGTTTATCACGAAACTAAAGGCTCCTTTCAGAGTTCCAGCGAATGCCATTGCCATTCCCTCTAACCTAACCAGACTGGGTCTTTCCACCGTTGTTAACAATCTTATTTCAGCCGGGAATCCCGAGTGGGTAGAAGAACCATTTGATTTTCTAATTGATGGCGAGCTTGTCAGAATGTCACTGGAGAAATTCCTTCTTGCCAAGGGCATCTCAGCGGAAAAAACATTGGAAATTGAGTACCTTAAGGCGGTTGCCCCACGAAGGGAGGAAGAGCCTTCTGTTCATGATGATTGGGTCAGTGCAGTTGATAAGTATTTGAATGCAACGTCTACTTTGTTATCTAGTAGTCATCTATAA

Protein sequence

MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDKYLNATSTLLSSSHL

Homology

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BLAST of HG10003104.1 vs. NCBI nr
Match: XP_008442030.1 (PREDICTED: ribosome biogenesis protein WDR12 homolog [Cucumis melo] >XP_008442032.1 PREDICTED: ribosome biogenesis protein WDR12 homolog [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 9.6e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104.1 vs. NCBI nr
Match: TYK05339.1 (ribosome biogenesis protein WDR12-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 230.3 bits (586), Expect = 9.6e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104.1 vs. NCBI nr
Match: KAA0041816.1 (ribosome biogenesis protein WDR12-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 230.3 bits (586), Expect = 9.6e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104.1 vs. NCBI nr
Match: XP_004149101.1 (ribosome biogenesis protein WDR12 homolog [Cucumis sativus] >KGN53899.1 hypothetical protein Csa_019131 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 1.1e-55
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRR+QVRFITKL APF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104.1 vs. NCBI nr
Match: XP_038875775.1 (ribosome biogenesis protein WDR12 homolog [Benincasa hispida] >XP_038875785.1 ribosome biogenesis protein WDR12 homolog [Benincasa hispida])

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54
Identity = 111/119 (93.28%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MD DG F+DTSRRIQVRFITKLKAPF+VPANAIAIPS+LTRLGLST+VNNL+SAGNPEW 
Sbjct: 1   MDTDGVFDDTSRRIQVRFITKLKAPFKVPANAIAIPSSLTRLGLSTIVNNLLSAGNPEWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104.1 vs. ExPASy Swiss-Prot
Match: Q9LF27 (Ribosome biogenesis protein WDR12 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR12 PE=1 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.5e-46
Identity = 87/119 (73.11%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDG  ED SRR+ V+F+TKL +PF+VP N++AIPSN+TRLGLS++VN++I + NPEW 
Sbjct: 1   MDIDG--EDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
            EPFDFLIDGEL+RMSLE+FLLAKGISAE+TLEIEY++AV PR+EEEPS+HDDWVSAV+
Sbjct: 61  TEPFDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVN 117

[Close]

BLAST of HG10003104.1 vs. ExPASy Swiss-Prot
Match: Q8H594 (Ribosome biogenesis protein WDR12 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=WDR12 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-36
Identity = 70/115 (60.87%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 5   GDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPF 64
           G   D SR+++VRF+TKL AP R P  +IA+P++LTR+GLS +VN+L+ A +P+   +PF
Sbjct: 4   GGASDPSRQVRVRFLTKLPAPLRAPPTSIAVPADLTRMGLSEIVNSLLLAASPDHQAQPF 63

Query: 65  DFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           DFL+DGELVR+ L++FLLAKGIS E+ LE+EY+KAVAPR++E+P  HDDWVSAVD
Sbjct: 64  DFLVDGELVRLPLQEFLLAKGISVERVLELEYVKAVAPRKQEDPCPHDDWVSAVD 118

[Close]

BLAST of HG10003104.1 vs. ExPASy Swiss-Prot
Match: A8IR43 (Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii OX=3055 GN=CHLREDRAFT_128420 PE=3 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-25
Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 13  RIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGEL 72
           ++ V+F+TKL A  RVP   +A+PS+L R GLS ++N+L++   P     PFDFLIDGEL
Sbjct: 6   QVLVKFVTKLPAHLRVPETPVAVPSDLKRYGLSQIINHLLALDPP----RPFDFLIDGEL 65

Query: 73  VRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           VR SLE+ LLA  +SAE TLE+EY+ AV P +++  + HDDWVS+VD
Sbjct: 66  VRKSLEQHLLAHNLSAESTLEVEYVPAVVPPQQKNSTPHDDWVSSVD 108

[Close]

BLAST of HG10003104.1 vs. ExPASy Swiss-Prot
Match: A1CXL0 (Ribosome biogenesis protein ytm1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=ytm1 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-17
Identity = 55/128 (42.97%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 2   DIDGDFEDTSRRIQVRF-ITKLKAPFRVPANA--IAIPSNLTRLGLSTVVNNLISAGNPE 61
           D D     ++ + QVR  +T  +    +P NA  I +P++L R  LST+VNNL+    P 
Sbjct: 6   DFDATATSSAAQRQVRVQLTSKQEDIALPDNAGPILVPTSLRRYALSTLVNNLLGNDKP- 65

Query: 62  WVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAV 121
               PF+FLI+G  +R S++++L A GISAE TLEIEY++A+ P        HDDWVS+ 
Sbjct: 66  ---IPFEFLINGTFLRTSIDEYLTANGISAETTLEIEYVRALIPPLHIASFQHDDWVSST 125

Query: 122 DKYLNATS 127
           D  L+ATS
Sbjct: 126 D-VLSATS 128

[Close]

BLAST of HG10003104.1 vs. ExPASy Swiss-Prot
Match: Q2UGK1 (Ribosome biogenesis protein ytm1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=ytm1 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.7e-17
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 10  TSRRIQVRFITKLKAPFRVPANA--IAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFL 69
           T R+++V+ +T  +    +P N   I +P+ L R  LST+VNNL+    P     PF+FL
Sbjct: 14  TQRQVRVQ-LTSKQEDIALPENTGPILVPTGLRRYALSTLVNNLLGNDKP----IPFEFL 73

Query: 70  IDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDKYLNATST 129
           I+G  +R S++++L A GISAE TLEIEY++A+ P        HDDWVS+VD  L+ TS 
Sbjct: 74  INGSFLRTSIDEYLTANGISAETTLEIEYVRALIPPLHIASFEHDDWVSSVD-VLSTTSP 130

Query: 130 LLS 131
             S
Sbjct: 134 AAS 130

[Close]

BLAST of HG10003104.1 vs. ExPASy TrEMBL
Match: A0A1S3B4A1 (Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo OX=3656 GN=LOC103486017 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.6e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104.1 vs. ExPASy TrEMBL
Match: A0A5D3C4N3 (Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00050 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.6e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104.1 vs. ExPASy TrEMBL
Match: A0A5A7TIJ1 (Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G001930 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.6e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104.1 vs. ExPASy TrEMBL
Match: A0A0A0KYI3 (Ribosome biogenesis protein WDR12 homolog OS=Cucumis sativus OX=3659 GN=Csa_4G187290 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.1e-56
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRR+QVRFITKL APF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104.1 vs. ExPASy TrEMBL
Match: A0A6J1DM12 (Ribosome biogenesis protein WDR12 homolog OS=Momordica charantia OX=3673 GN=LOC111022210 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 9.0e-53
Identity = 108/119 (90.76%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDG  EDTSRR+QVRFITKLKAPF+VP NAIAIPSNLTRLGLSTVVNNLI AGNPEW 
Sbjct: 1   MDIDGVSEDTSRRVQVRFITKLKAPFKVPTNAIAIPSNLTRLGLSTVVNNLILAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
            EPFDFLIDGELVRMSLE+FLLAKGISAEKTLEIEY+KAVAPR+EEEPSVHDDWVSAVD
Sbjct: 61  AEPFDFLIDGELVRMSLEQFLLAKGISAEKTLEIEYIKAVAPRKEEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104.1 vs. TAIR 10
Match: AT5G15550.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 185.7 bits (470), Expect = 2.5e-47
Identity = 87/119 (73.11%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDG  ED SRR+ V+F+TKL +PF+VP N++AIPSN+TRLGLS++VN++I + NPEW 
Sbjct: 1   MDIDG--EDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
            EPFDFLIDGEL+RMSLE+FLLAKGISAE+TLEIEY++AV PR+EEEPS+HDDWVSAV+
Sbjct: 61  TEPFDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVN 117

[Close]

BLAST of HG10003104.1 vs. TAIR 10
Match: AT5G15550.2 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 185.7 bits (470), Expect = 2.5e-47
Identity = 87/119 (73.11%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDG  ED SRR+ V+F+TKL +PF+VP N++AIPSN+TRLGLS++VN++I + NPEW 
Sbjct: 1   MDIDG--EDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
            EPFDFLIDGEL+RMSLE+FLLAKGISAE+TLEIEY++AV PR+EEEPS+HDDWVSAV+
Sbjct: 61  TEPFDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVN 117

The following BLAST results are available for this feature:

BLAST of HG10003104.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442030.1	9.6e-57	96.64	PREDICTED: ribosome biogenesis protein WDR12 homolog [Cucumis melo] >XP_00844203...	[more]
TYK05339.1	9.6e-57	96.64	ribosome biogenesis protein WDR12-like protein [Cucumis melo var. makuwa]	[more]
KAA0041816.1	9.6e-57	96.64	ribosome biogenesis protein WDR12-like protein [Cucumis melo var. makuwa]	[more]
XP_004149101.1	1.1e-55	94.96	ribosome biogenesis protein WDR12 homolog [Cucumis sativus] >KGN53899.1 hypothet...	[more]
XP_038875775.1	1.5e-54	93.28	ribosome biogenesis protein WDR12 homolog [Benincasa hispida] >XP_038875785.1 ri...	[more]

BLAST of HG10003104.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF27	3.5e-46	73.11	Ribosome biogenesis protein WDR12 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR...	[more]
Q8H594	1.1e-36	60.87	Ribosome biogenesis protein WDR12 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
A8IR43	3.4e-25	53.27	Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii OX=3055 G...	[more]
A1CXL0	4.5e-17	42.97	Ribosome biogenesis protein ytm1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM...	[more]
Q2UGK1	7.7e-17	43.09	Ribosome biogenesis protein ytm1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB ...	[more]

BLAST of HG10003104.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B4A1	4.6e-57	96.64	Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo OX=3656 GN=LOC10348601...	[more]
A0A5D3C4N3	4.6e-57	96.64	Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5A7TIJ1	4.6e-57	96.64	Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0KYI3	5.1e-56	94.96	Ribosome biogenesis protein WDR12 homolog OS=Cucumis sativus OX=3659 GN=Csa_4G18...	[more]
A0A6J1DM12	9.0e-53	90.76	Ribosome biogenesis protein WDR12 homolog OS=Momordica charantia OX=3673 GN=LOC1...	[more]

BLAST of HG10003104.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15550.1	2.5e-47	73.11	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G15550.2	2.5e-47	73.11	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012972	NLE	PFAM	PF08154	NLE	coord: 14..81 e-value: 3.4E-19 score: 69.1
None	No IPR available	PANTHER	PTHR19855:SF11	RIBOSOME BIOGENESIS PROTEIN WDR12	coord: 9..119
None	No IPR available	PANTHER	PTHR19855	WD40 REPEAT PROTEIN 12, 37	coord: 9..119

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10003104	HG10003104	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10003104.1-cds	HG10003104.1-cds-Chr11:17403660..17403800	CDS
HG10003104.1-cds	HG10003104.1-cds-Chr11:17403971..17404071	CDS
HG10003104.1-cds	HG10003104.1-cds-Chr11:17404187..17404349	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10003104.1	HG10003104.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0043021	ribonucleoprotein complex binding