HG10003104 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003104
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosome biogenesis protein WDR12 homolog
Location	Chr11: 17403660 .. 17404349 (-)
RNA-Seq Expression	HG10003104
Synteny	HG10003104

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTGATGGGGATTTTGAGGACACTTCTCGCCGAATTCAAGTGCGGTTTATCACGAAACTAAAGGCTCCTTTCAGAGTTCCAGCGAATGCCATTGCCATTCCCTCTAACCTAACCAGACTGGGTCTTTCCACCGTTGTTAACAATCTTATTTCAGCCGGTATGCTATCTGATCATGTCTACAATGTCTTCTGGTTATTTGGTGTTTGGGTGGAACTATTTTCTGAGCTTCATATAAACTTTATTTTTCAATAATTAAAATTATTACTTGATAGGGAATCCCGAGTGGGTAGAAGAACCATTTGATTTTCTAATTGATGGCGAGCTTGTCAGAATGTCACTGGAGAAATTCCTTCTTGCCAAGGGCATCTCAGCGGTAATATTTTAATTTGGGCGACTTGTATTTTTTATTTTTTATTTTTCAATGTTCAGCTCCAAAGATGTGTGGAAAGAAAATGAGAAACTTTAGAACCCTCAAAATATACAATTTGTTTAGATTTAATTTTGTTAGTTGAAGATTTTATCTGTTATTTTGGCATAAAATAGGAAAAAACATTGGAAATTGAGTACCTTAAGGCGGTTGCCCCACGAAGGGAGGAAGAGCCTTCTGTTCATGATGATTGGGTCAGTGCAGTTGATAAGTATTTGAATGCAACGTCTACTTTGTTATCTAGTAGTCATCTATAA

mRNA sequence

ATGGATATTGATGGGGATTTTGAGGACACTTCTCGCCGAATTCAAGTGCGGTTTATCACGAAACTAAAGGCTCCTTTCAGAGTTCCAGCGAATGCCATTGCCATTCCCTCTAACCTAACCAGACTGGGTCTTTCCACCGTTGTTAACAATCTTATTTCAGCCGGGAATCCCGAGTGGGTAGAAGAACCATTTGATTTTCTAATTGATGGCGAGCTTGTCAGAATGTCACTGGAGAAATTCCTTCTTGCCAAGGGCATCTCAGCGGAAAAAACATTGGAAATTGAGTACCTTAAGGCGGTTGCCCCACGAAGGGAGGAAGAGCCTTCTGTTCATGATGATTGGGTCAGTGCAGTTGATAAGTATTTGAATGCAACGTCTACTTTGTTATCTAGTAGTCATCTATAA

Coding sequence (CDS)

ATGGATATTGATGGGGATTTTGAGGACACTTCTCGCCGAATTCAAGTGCGGTTTATCACGAAACTAAAGGCTCCTTTCAGAGTTCCAGCGAATGCCATTGCCATTCCCTCTAACCTAACCAGACTGGGTCTTTCCACCGTTGTTAACAATCTTATTTCAGCCGGGAATCCCGAGTGGGTAGAAGAACCATTTGATTTTCTAATTGATGGCGAGCTTGTCAGAATGTCACTGGAGAAATTCCTTCTTGCCAAGGGCATCTCAGCGGAAAAAACATTGGAAATTGAGTACCTTAAGGCGGTTGCCCCACGAAGGGAGGAAGAGCCTTCTGTTCATGATGATTGGGTCAGTGCAGTTGATAAGTATTTGAATGCAACGTCTACTTTGTTATCTAGTAGTCATCTATAA

Protein sequence

MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDKYLNATSTLLSSSHL

Homology

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BLAST of HG10003104 vs. NCBI nr
Match: XP_008442030.1 (PREDICTED: ribosome biogenesis protein WDR12 homolog [Cucumis melo] >XP_008442032.1 PREDICTED: ribosome biogenesis protein WDR12 homolog [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 9.6e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104 vs. NCBI nr
Match: TYK05339.1 (ribosome biogenesis protein WDR12-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 230.3 bits (586), Expect = 9.6e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104 vs. NCBI nr
Match: KAA0041816.1 (ribosome biogenesis protein WDR12-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 230.3 bits (586), Expect = 9.6e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104 vs. NCBI nr
Match: XP_004149101.1 (ribosome biogenesis protein WDR12 homolog [Cucumis sativus] >KGN53899.1 hypothetical protein Csa_019131 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 1.1e-55
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRR+QVRFITKL APF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104 vs. NCBI nr
Match: XP_038875775.1 (ribosome biogenesis protein WDR12 homolog [Benincasa hispida] >XP_038875785.1 ribosome biogenesis protein WDR12 homolog [Benincasa hispida])

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54
Identity = 111/119 (93.28%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MD DG F+DTSRRIQVRFITKLKAPF+VPANAIAIPS+LTRLGLST+VNNL+SAGNPEW 
Sbjct: 1   MDTDGVFDDTSRRIQVRFITKLKAPFKVPANAIAIPSSLTRLGLSTIVNNLLSAGNPEWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104 vs. ExPASy Swiss-Prot
Match: Q9LF27 (Ribosome biogenesis protein WDR12 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR12 PE=1 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.5e-46
Identity = 87/119 (73.11%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDG  ED SRR+ V+F+TKL +PF+VP N++AIPSN+TRLGLS++VN++I + NPEW 
Sbjct: 1   MDIDG--EDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
            EPFDFLIDGEL+RMSLE+FLLAKGISAE+TLEIEY++AV PR+EEEPS+HDDWVSAV+
Sbjct: 61  TEPFDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVN 117

[Close]

BLAST of HG10003104 vs. ExPASy Swiss-Prot
Match: Q8H594 (Ribosome biogenesis protein WDR12 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=WDR12 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-36
Identity = 70/115 (60.87%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 5   GDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPF 64
           G   D SR+++VRF+TKL AP R P  +IA+P++LTR+GLS +VN+L+ A +P+   +PF
Sbjct: 4   GGASDPSRQVRVRFLTKLPAPLRAPPTSIAVPADLTRMGLSEIVNSLLLAASPDHQAQPF 63

Query: 65  DFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           DFL+DGELVR+ L++FLLAKGIS E+ LE+EY+KAVAPR++E+P  HDDWVSAVD
Sbjct: 64  DFLVDGELVRLPLQEFLLAKGISVERVLELEYVKAVAPRKQEDPCPHDDWVSAVD 118

[Close]

BLAST of HG10003104 vs. ExPASy Swiss-Prot
Match: A8IR43 (Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii OX=3055 GN=CHLREDRAFT_128420 PE=3 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-25
Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 13  RIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGEL 72
           ++ V+F+TKL A  RVP   +A+PS+L R GLS ++N+L++   P     PFDFLIDGEL
Sbjct: 6   QVLVKFVTKLPAHLRVPETPVAVPSDLKRYGLSQIINHLLALDPP----RPFDFLIDGEL 65

Query: 73  VRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           VR SLE+ LLA  +SAE TLE+EY+ AV P +++  + HDDWVS+VD
Sbjct: 66  VRKSLEQHLLAHNLSAESTLEVEYVPAVVPPQQKNSTPHDDWVSSVD 108

[Close]

BLAST of HG10003104 vs. ExPASy Swiss-Prot
Match: A1CXL0 (Ribosome biogenesis protein ytm1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=ytm1 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-17
Identity = 55/128 (42.97%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 2   DIDGDFEDTSRRIQVRF-ITKLKAPFRVPANA--IAIPSNLTRLGLSTVVNNLISAGNPE 61
           D D     ++ + QVR  +T  +    +P NA  I +P++L R  LST+VNNL+    P 
Sbjct: 6   DFDATATSSAAQRQVRVQLTSKQEDIALPDNAGPILVPTSLRRYALSTLVNNLLGNDKP- 65

Query: 62  WVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAV 121
               PF+FLI+G  +R S++++L A GISAE TLEIEY++A+ P        HDDWVS+ 
Sbjct: 66  ---IPFEFLINGTFLRTSIDEYLTANGISAETTLEIEYVRALIPPLHIASFQHDDWVSST 125

Query: 122 DKYLNATS 127
           D  L+ATS
Sbjct: 126 D-VLSATS 128

[Close]

BLAST of HG10003104 vs. ExPASy Swiss-Prot
Match: Q2UGK1 (Ribosome biogenesis protein ytm1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=ytm1 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.7e-17
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 10  TSRRIQVRFITKLKAPFRVPANA--IAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFL 69
           T R+++V+ +T  +    +P N   I +P+ L R  LST+VNNL+    P     PF+FL
Sbjct: 14  TQRQVRVQ-LTSKQEDIALPENTGPILVPTGLRRYALSTLVNNLLGNDKP----IPFEFL 73

Query: 70  IDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDKYLNATST 129
           I+G  +R S++++L A GISAE TLEIEY++A+ P        HDDWVS+VD  L+ TS 
Sbjct: 74  INGSFLRTSIDEYLTANGISAETTLEIEYVRALIPPLHIASFEHDDWVSSVD-VLSTTSP 130

Query: 130 LLS 131
             S
Sbjct: 134 AAS 130

[Close]

BLAST of HG10003104 vs. ExPASy TrEMBL
Match: A0A1S3B4A1 (Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo OX=3656 GN=LOC103486017 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.6e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104 vs. ExPASy TrEMBL
Match: A0A5D3C4N3 (Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00050 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.6e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104 vs. ExPASy TrEMBL
Match: A0A5A7TIJ1 (Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G001930 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.6e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104 vs. ExPASy TrEMBL
Match: A0A0A0KYI3 (Ribosome biogenesis protein WDR12 homolog OS=Cucumis sativus OX=3659 GN=Csa_4G187290 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.1e-56
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRR+QVRFITKL APF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVD
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104 vs. ExPASy TrEMBL
Match: A0A6J1DM12 (Ribosome biogenesis protein WDR12 homolog OS=Momordica charantia OX=3673 GN=LOC111022210 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 9.0e-53
Identity = 108/119 (90.76%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDG  EDTSRR+QVRFITKLKAPF+VP NAIAIPSNLTRLGLSTVVNNLI AGNPEW 
Sbjct: 1   MDIDGVSEDTSRRVQVRFITKLKAPFKVPTNAIAIPSNLTRLGLSTVVNNLILAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
            EPFDFLIDGELVRMSLE+FLLAKGISAEKTLEIEY+KAVAPR+EEEPSVHDDWVSAVD
Sbjct: 61  AEPFDFLIDGELVRMSLEQFLLAKGISAEKTLEIEYIKAVAPRKEEEPSVHDDWVSAVD 119

[Close]

BLAST of HG10003104 vs. TAIR 10
Match: AT5G15550.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 185.7 bits (470), Expect = 2.5e-47
Identity = 87/119 (73.11%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDG  ED SRR+ V+F+TKL +PF+VP N++AIPSN+TRLGLS++VN++I + NPEW 
Sbjct: 1   MDIDG--EDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
            EPFDFLIDGEL+RMSLE+FLLAKGISAE+TLEIEY++AV PR+EEEPS+HDDWVSAV+
Sbjct: 61  TEPFDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVN 117

[Close]

BLAST of HG10003104 vs. TAIR 10
Match: AT5G15550.2 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 185.7 bits (470), Expect = 2.5e-47
Identity = 87/119 (73.11%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDG  ED SRR+ V+F+TKL +PF+VP N++AIPSN+TRLGLS++VN++I + NPEW 
Sbjct: 1   MDIDG--EDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVD 120
            EPFDFLIDGEL+RMSLE+FLLAKGISAE+TLEIEY++AV PR+EEEPS+HDDWVSAV+
Sbjct: 61  TEPFDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVN 117

The following BLAST results are available for this feature:

BLAST of HG10003104 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442030.1	9.6e-57	96.64	PREDICTED: ribosome biogenesis protein WDR12 homolog [Cucumis melo] >XP_00844203...	[more]
TYK05339.1	9.6e-57	96.64	ribosome biogenesis protein WDR12-like protein [Cucumis melo var. makuwa]	[more]
KAA0041816.1	9.6e-57	96.64	ribosome biogenesis protein WDR12-like protein [Cucumis melo var. makuwa]	[more]
XP_004149101.1	1.1e-55	94.96	ribosome biogenesis protein WDR12 homolog [Cucumis sativus] >KGN53899.1 hypothet...	[more]
XP_038875775.1	1.5e-54	93.28	ribosome biogenesis protein WDR12 homolog [Benincasa hispida] >XP_038875785.1 ri...	[more]

BLAST of HG10003104 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF27	3.5e-46	73.11	Ribosome biogenesis protein WDR12 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR...	[more]
Q8H594	1.1e-36	60.87	Ribosome biogenesis protein WDR12 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
A8IR43	3.4e-25	53.27	Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii OX=3055 G...	[more]
A1CXL0	4.5e-17	42.97	Ribosome biogenesis protein ytm1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM...	[more]
Q2UGK1	7.7e-17	43.09	Ribosome biogenesis protein ytm1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB ...	[more]

BLAST of HG10003104 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B4A1	4.6e-57	96.64	Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo OX=3656 GN=LOC10348601...	[more]
A0A5D3C4N3	4.6e-57	96.64	Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5A7TIJ1	4.6e-57	96.64	Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0KYI3	5.1e-56	94.96	Ribosome biogenesis protein WDR12 homolog OS=Cucumis sativus OX=3659 GN=Csa_4G18...	[more]
A0A6J1DM12	9.0e-53	90.76	Ribosome biogenesis protein WDR12 homolog OS=Momordica charantia OX=3673 GN=LOC1...	[more]

BLAST of HG10003104 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15550.1	2.5e-47	73.11	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G15550.2	2.5e-47	73.11	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012972	NLE	PFAM	PF08154	NLE	coord: 14..81 e-value: 3.4E-19 score: 69.1
None	No IPR available	PANTHER	PTHR19855:SF11	RIBOSOME BIOGENESIS PROTEIN WDR12	coord: 9..119
None	No IPR available	PANTHER	PTHR19855	WD40 REPEAT PROTEIN 12, 37	coord: 9..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003104.1	HG10003104.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0043021	ribonucleoprotein complex binding