Cucsat.G8884.T11 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G8884.T11
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	APO protein 1, chloroplastic
Location	ctg1635: 1276345 .. 1279996 (-)
RNA-Seq Expression	Cucsat.G8884.T11
Synteny	Cucsat.G8884.T11

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATGAATGTAGTTTTACTGGCTCACACTTTCGGTTCTTTTCACCCTCCTTTTGTTATAATACATTTGAAAAAAATAATTAAAAAAAAGCGTCCATTTAAAAATTTTCGCAGCCTCCACATTTCTCAGATTATTTTTCGCTCCACCTCTGCTCCGGCGGTAACAACCACTCCTTCTTCAACTTCATAGTTTATCTTCTTCAAATTTCTCTAATTGAAGCACTTAAATCTTTGATTTGTTCGAAATTATTGTTATATAATACCTTAGCTCTCAATTTCTCCATCGTTTTTGTTTCTGGTAATTTGAAGTTTGCTATACATCGTCGTTGTAGTTGTAACTACCATGCTTCCTGTTTTTTCGGTTCTGTTGGGACTGATATATGTTTGGTTTCTTTTTCAAGGCAACAAGGCAGCTAGAGAATCGGTGACTTGATGCTCCAGATACTTCCGGCGGTTTCTACTTGTTCTTGGGACCCATCTCAAATGGGTAGGTTTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTATTTTTTGTATTGATACCTAAATTTGTAATCTCTGGGAGGAATTGAAAGGACGAGGACAATAGATGATAACTCACCATTCATATCGGTGTGGTGCTTGGTCACCATCACTCATTGGATTGGATCAAGTCAGCATTCGTTTAGAGAGCTAAAGAGTAGAGCATACCTCAAATATCGTTACCTCTCATGATTGTCTAGAAATAGGTTTTGTAACTGTCATTTGCTCATTAACTTTCCGAGTCATTAAGGAGGGTCGGTCTCCCTACACTAAGTGAAATTTACTTATGGCTACATGAACAACCCTATAGGTAGGTTTCTATATTTTGACAGATTAACTTATGACTTCATGGCTGACTCCATAGGTTGATCTCTTCCAAATTAAGCTCTTCTATTGGAATGATCCATTGGGAATTTGGTCGTCCGAGCTAACTATTTAGTCATACTTCTTACCCACAGCATTTTGAATTATAGAAAGAGTGTCCTTCATTGCTCCATTGTTGTTCACTAATTGGAGGCGTTGTTCATCCATAACTGCGTAGTAGCTACTGCCATTTGATTCCAATTGAAGTCTGAAAGATGTTTTGTTGTTGAACAATGGCTTGAGCTTATATCGGACTGATTTTATTGAATGTTTTAGGTATCCTCATTGGTAATGTGGAGTTTACAAGCCGGCACCTTTCTGCACTTGGATCATATACTCTTCGACCGAAGGTTCAAATGCTTATCCAAATCATCTCTACGAAATTTCAGTACTCTCTTGCTTGATTTTCTCTTGATTCTAGTGATCCTGTTGATGAAATGACATGCCTGGCTATGGATTTTGGATCATTTACCAAGACATGTTTATATTACCAGATCATATCTTGGTTTGTAATCCTACTTCGAAATCATTACCCTTCCAAATGGTTAAAACATGAATACTCTCAGTTTAAGTAAAATGATGTTTCTGTTACATCTTGTATTTGTATCTCAGATTTTGAGGGCATCCTTCTATGCGAGTCACTATCTCACTTTATTCTTGAAGATAATTACTATTGATTTTTAATGGTTCTCCTACTTCCTATGAGAAACTCTGAGAGAAATAAGATCTTGCAATATTCTTCTATTGCAGTTTGCGCATAAACTGTTGTCTCAAAAAGTGCCAACAGCATTAAGGACTTTATCCTATACCAGTCAGGAATATGGAAAAGAACCTGTTTCGAAGAAACAAGACATGTATCGCCAGAATGTGGATCTTCCAGCCATATTGCCTAAAAAGAAAAAGAAACCTTATCCTATTCCCATAAAGCAAATAAAGCGGGCTGCGAGAGCTGACAAAGAGCTTGCACAAAGGGGTATAGAGAAACCACTTGAACCTGGGAAAAATGGTTTACTTGTACCTGATTTGATACCTGTTGCTCATCAAGTAATGGATGCTTGGAAAATTTTGATTAAGGGCCTTTCACATCTTTTACATGTTATTCCAGTATATGCTTGCAGGTTGTTCTTTTCTGGTCAAGAAGTTTTAATATGAAATATTTTTAGCGAGCTCGTTTGGCTCTGTCCTTCTAGTCTTTCAGCATGCTAAATTTAAAATCCATAGTTATGCTGAATAGCAAATGTCTTTTGATTCTGTGTAGGGAATGTTCAGAAGTTCATGTAGCCCATTCAGGCCACCATATTCAAGATTGTCTTGGTGCTACCAGTGCAACGCGTCGAAGCTTCCACTCATGGGTCACAGGTTCTATTAATGATGTCTTAGTCCCTATTGAGTCATACCATCTTTATGATCCTTTTGGCCGGCGCATTAAGCATGAAACACGATTCGAATATGATAGAATTCCAGCTGTTGTAGAGCTCTGCATCCAGGCCGGTGTGGATATACCGGAGTATCCTTCACGTAGAAGAACTAAACCCATCCAAATGATTGGAAAGAAGGTAATTGATCGAGGTGGAAATATGGAGGAGCCTAAACCTTGGAAATCTTGTGATTCTTACCCTCTTCTTGATTTCGATACACAAGGGGCTCCTCAACGATTTGCACCTCCTCTACCTGAAGATGTCCCTAGAATTGCTCAAGAAACAATCGCAGCATATGAAACTGTTAGGTATGGTGTAAGGATGTTGATGAAGAAGTATACAGTGAAGGCTTGTGGGTACTGCCCTGAGGTTCATGTAGGACCATGGGGTCATAATGCTAAACTATGTGGAGAATTTAAGCACCAGTGGAGGGATGGAAAGCATGGTTGGCAGGATGCAACTTTAGACGAAGTACTGCCTCGCAATTATGTTTGGCATGTCCGTGATCCAAAAGGTCCGCCATTGATTGGTACATTGAAGAGGTTTTATGGTAAAGCTCCTGCTGTAGTTGAAGTGTGTATTCAGGCAGGCGCAACGATCCCCAAGAAATACTTGCCAATGATGAGGCTAGACATAGTCCTTCCTGATAGCGAGGAGGCGCGATCTGTTGCATAATTGCGTTGGCCAAAGTCATGGCGATTTCATCTGCACAGGTCTGTCCCAAGACCTCTATTCTTATCTTCGAGTTTCTGAAGAGATAAATTTTAAACATCAACAGTTGATGGAACTACAGCTTAGATGCTACATTAAGAGCAGTTAGAAAAGTGAGGATATCAGATGTATATTAAGGTTTGACTAGATTTCCTTGTTACAGTGTCTTCCTTGATCCCCTTGTTTGTATAGTTAAGATTTCCTGACCTTCAACCATTTGAATACTTGATAGATGCCGCTTTAACTTGTTGATTGACTTCGAGATCTATAATTGTGAAATTCAGAATGAAAATATGAAGTAGAAGGAGCCTCTTACAGTTATGTTGTATGTTGTGACGAGTCTTGAAATTGGAAATTTGTAATGTCAGCAAAGGATATTGACAAGTAAAAAAATCAGTAGCTCAAGTTTATTTTTTGTATGAACTTCTTTTTGCCTTTCTGTTTGTCATCATATCAAAGATGTTCCTGTGGCTGTGGCTTCCTTTTAAACGAAGAATTTCTCTTACCAAATTCAATTTAAAGCTACCTTCAACGACAAAGTTAGGATTGAAACGTTACCTTGGCAACTTAATGGAAAAATGAGAGGCATTGAAGGACTTTGAAGACAAGACGAGAAGATGCCAAGTTCTTG

Coding sequence (CDS)

ATGTGGAGTTTACAAGCCGGCACCTTTCTGCACTTGGATCATATACTCTTCGACCGAAGGGAATGTTCAGAAGTTCATGTAGCCCATTCAGGCCACCATATTCAAGATTGTCTTGGTGCTACCAGTGCAACGCGTCGAAGCTTCCACTCATGGGTCACAGGTTCTATTAATGATGTCTTAGTCCCTATTGAGTCATACCATCTTTATGATCCTTTTGGCCGGCGCATTAAGCATGAAACACGATTCGAATATGATAGAATTCCAGCTGTTGTAGAGCTCTGCATCCAGGCCGGTGTGGATATACCGGAGTATCCTTCACGTAGAAGAACTAAACCCATCCAAATGATTGGAAAGAAGGTAATTGATCGAGGTGGAAATATGGAGGAGCCTAAACCTTGGAAATCTTGTGATTCTTACCCTCTTCTTGATTTCGATACACAAGGGGCTCCTCAACGATTTGCACCTCCTCTACCTGAAGATGTCCCTAGAATTGCTCAAGAAACAATCGCAGCATATGAAACTGTTAGGTATGGTGTAAGGATGTTGATGAAGAAGTATACAGTGAAGGCTTGTGGGTACTGCCCTGAGGTTCATGTAGGACCATGGGGTCATAATGCTAAACTATGTGGAGAATTTAAGCACCAGTGGAGGGATGGAAAGCATGGTTGGCAGGATGCAACTTTAGACGAAGTACTGCCTCGCAATTATGTTTGGCATGTCCGTGATCCAAAAGGTCCGCCATTGATTGGTACATTGAAGAGGTTTTATGGTAAAGCTCCTGCTGTAGTTGAAGTGTGTATTCAGGCAGGCGCAACGATCCCCAAGAAATACTTGCCAATGATGAGGCTAGACATAGTCCTTCCTGATAGCGAGGAGGCGCGATCTGTTGCATAA

Protein sequence

MWSLQAGTFLHLDHILFDRRECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDVLVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKKVIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGVRMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWHVRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA

Homology

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BLAST of Cucsat.G8884.T11 vs. ExPASy Swiss-Prot
Match: Q9XIR4 (APO protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APO1 PE=2 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 7.4e-121
Identity = 200/300 (66.67%), Postives = 240/300 (80.00%), Query Frame = 0


Query: 2   WSLQAGTFLHLDHI--LFDRRECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDV 61
           W L       L H+  +F   EC  VHVA+ GH+I+DC G T++ RR  HSWV G+INDV
Sbjct: 137 WKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQRRGSHSWVKGTINDV 196

Query: 62  LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKK 121
           L+P+ESYH+YDPFGRRIKHETRFEY+RIPA+VELCIQAGV+IPEYP RRRT+PI+M+GK+
Sbjct: 197 LIPVESYHMYDPFGRRIKHETRFEYERIPALVELCIQAGVEIPEYPCRRRTQPIRMMGKR 256

Query: 122 VIDRGGNMEEP-KPWKSCD-SYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRY 181
           VIDRGG  +EP KP  S   S PL + DT G  +R+ PP PED+P+IAQET+ AYE VR 
Sbjct: 257 VIDRGGYHKEPEKPQTSSSLSSPLAELDTLGVFERYPPPTPEDIPKIAQETMDAYEKVRL 316

Query: 182 GVRMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYV 241
           GV  LM+K+TVKACGYC EVHVGPWGH+ KLCGEFKHQWRDGKHGWQDA +DEV P NYV
Sbjct: 317 GVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQWRDGKHGWQDALVDEVFPPNYV 376

Query: 242 WHVRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA 298
           WHVRD KG PL G L+RFYGKAPA+VE+C+ +GA +P++Y  MMRLDI++PDS+EA  VA
Sbjct: 377 WHVRDLKGNPLTGNLRRFYGKAPALVEICMHSGARVPQRYKAMMRLDIIVPDSQEADMVA 436

[Close]

BLAST of Cucsat.G8884.T11 vs. ExPASy Swiss-Prot
Match: Q8W4A5 (APO protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APO2 PE=2 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 2.0e-78
Identity = 136/277 (49.10%), Postives = 180/277 (64.98%), Query Frame = 0


Query: 22  CSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDVLVPIESYHLYDPFGRRIKHETR 81
           C+E+HV   GH  + C G  ++ R+  H W    I DV+VP+E+YHL+D  G+RI+H+ R
Sbjct: 166 CNEIHVGPYGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDER 225

Query: 82  FEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKKVIDRGGNMEEPKPWKSCDSYPL 141
           F   R+PAVVELCIQ GV+IPE+P++RR KPI  IGK         E P P       PL
Sbjct: 226 FSIPRVPAVVELCIQGGVEIPEFPAKRRRKPIIRIGKSEFVDADETELPDPEPQPPPVPL 285

Query: 142 LDFDTQGAPQRFAPP-LPEDVPRIAQETIAAYETVRYGVRMLMKKYTVKACGYCPEVHVG 201
           L   T+       PP   E+   +A+ET+ A+E +R G + LM+ Y V+ CGYCPEVHVG
Sbjct: 286 L---TELPVSEITPPSSEEETVSLAEETLQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVG 345

Query: 202 PWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWHVRDPKGPPLIGTLKRFYGKAP 261
           P GH A+ CG FKHQ R+G+HGWQ A LD+++P  YVWHV D  GPP+   L+ FYG+AP
Sbjct: 346 PTGHKAQNCGAFKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQRELRSFYGQAP 405

Query: 262 AVVEVCIQAGATIPKKYLPMMRLDIVLPDS-EEARSV 297
           AVVE+C QAGA +P+ Y   MRL++ +P S +EA  V
Sbjct: 406 AVVEICAQAGAVVPEHYRATMRLEVGIPSSVKEAEMV 439

[Close]

BLAST of Cucsat.G8884.T11 vs. ExPASy Swiss-Prot
Match: Q9FH50 (APO protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=APO3 PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 7.6e-65
Identity = 123/297 (41.41%), Postives = 182/297 (61.28%), Query Frame = 0


Query: 4   LQAGTFLHLDHILFDR-RECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDVLVP 63
           L +G    + H+   R R C+EVH+   GH I+ C G  S +R + H W  G ++DV++ 
Sbjct: 112 LLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRVSDVVLF 171

Query: 64  IESYHLYDPFGR-RIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKKVI 123
            + +HLYD   + R+ H+ RF   +I AV+ELCIQAGVD+ ++PS+RR+KP+  I  +++
Sbjct: 172 PKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKFPSKRRSKPVYSIEGRIV 231

Query: 124 DRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGVRM 183
           D     +         +  L+  D +   ++      + +  ++ ET+ ++  +  GVR 
Sbjct: 232 DFEDVNDGNSELAVTSTTTLIQEDDRCKEEK------KSLKELSFETMESWFEMVLGVRK 291

Query: 184 LMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWHVR 243
           LM++Y V  CGYCPE+ VGP GH  ++C   KHQ RDG H WQ+AT+D+V+   YVWHVR
Sbjct: 292 LMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATIDDVVGPTYVWHVR 351

Query: 244 DP-KGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA 298
           DP  G  L  +LKRFYGKAPAV+E+C+Q GA +P +Y  MMRLD+V P  +E   VA
Sbjct: 352 DPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYPQRDEVDLVA 402

[Close]

BLAST of Cucsat.G8884.T11 vs. ExPASy Swiss-Prot
Match: Q9LSZ0 (APO protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=APO4 PE=2 SV=2)

HSP 1 Score: 181.4 bits (459), Expect = 1.5e-44
Identity = 94/261 (36.02%), Postives = 135/261 (51.72%), Query Frame = 0


Query: 22  CSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDVLVPIESYHLYDPFGRRIKHETR 81
           CSEV V   GH I+ C           H WV GSIND+LVP+ESYHL++     I+H+ R
Sbjct: 91  CSEVFVGKEGHLIETCRSYIRRGNNRLHEWVPGSINDILVPVESYHLHNISQGVIRHQER 150

Query: 82  FEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKKVIDRGGNMEEPKPWKSCDSYPL 141
           F+YDR+PA++ELC QAG   PE               +++      + P+         +
Sbjct: 151 FDYDRVPAILELCCQAGAIHPE---------------EILQYSEIHDNPQ---------I 210

Query: 142 LDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGVRMLMKKYTVKACGYCPEVHVGP 201
            + D +  P         D+  +    + A+E VR GV+ L+  Y  K C  C EVHVGP
Sbjct: 211 SEEDIRSLP-------AGDLKYVGANALMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGP 270

Query: 202 WGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWHVRDPKGPPLIGTLKRFYGKAPA 261
            GH A+LCG FK++   G H W+ A +++++P   VWH R      L+   + +YG APA
Sbjct: 271 SGHKARLCGVFKYESWRGTHYWEKAGVNDLVPEKMVWHRRPQDPVVLVDEGRSYYGHAPA 320

Query: 262 VVEVCIQAGATIPKKYLPMMR 283
           +V +C   GA +P KY   M+
Sbjct: 331 IVSLCSHTGAIVPVKYACKMK 320

[Close]

BLAST of Cucsat.G8884.T11 vs. NCBI nr
Match: XP_004149527.1 (APO protein 1, chloroplastic [Cucumis sativus] >KGN54971.1 hypothetical protein Csa_012644 [Cucumis sativus])

HSP 1 Score: 600 bits (1547), Expect = 3.68e-214
Identity = 282/298 (94.63%), Postives = 286/298 (95.97%), Query Frame = 0


Query: 2   WSLQAGTFLHLDHIL--FDRRECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDV 61
           W +      HL H++  +  RECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDV
Sbjct: 146 WKILIKGLSHLLHVIPVYACRECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDV 205

Query: 62  LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKK 121
           LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKK
Sbjct: 206 LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKK 265

Query: 122 VIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGV 181
           VIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGV
Sbjct: 266 VIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGV 325

Query: 182 RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH 241
           RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH
Sbjct: 326 RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH 385

Query: 242 VRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA 297
           VRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA
Sbjct: 386 VRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA 443

[Close]

BLAST of Cucsat.G8884.T11 vs. NCBI nr
Match: XP_008464665.1 (PREDICTED: APO protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 583 bits (1503), Expect = 1.84e-207
Identity = 272/298 (91.28%), Postives = 282/298 (94.63%), Query Frame = 0


Query: 2   WSLQAGTFLHLDHIL--FDRRECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDV 61
           W +      HL H++  +  RECSEVHVAHSGHHIQDCLG+TSA RRSFHSWVTGSINDV
Sbjct: 146 WKILIKGLSHLLHVIPVYACRECSEVHVAHSGHHIQDCLGSTSAMRRSFHSWVTGSINDV 205

Query: 62  LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKK 121
           LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPI+MIGKK
Sbjct: 206 LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRMIGKK 265

Query: 122 VIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGV 181
           VIDRGGNMEEPKPW+SC+SYPLLDFDTQGA QRFAPPLP+DVPRIAQETI AYETVRYGV
Sbjct: 266 VIDRGGNMEEPKPWQSCESYPLLDFDTQGASQRFAPPLPDDVPRIAQETIEAYETVRYGV 325

Query: 182 RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH 241
           RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH
Sbjct: 326 RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH 385

Query: 242 VRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA 297
           VRDPKGPPLIGTLKRFYGKAPAVVEVC+QAGATIPKKYLPMMRLDIVLPD EEARSVA
Sbjct: 386 VRDPKGPPLIGTLKRFYGKAPAVVEVCMQAGATIPKKYLPMMRLDIVLPDGEEARSVA 443

[Close]

BLAST of Cucsat.G8884.T11 vs. NCBI nr
Match: TYK28069.1 (APO protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 583 bits (1503), Expect = 5.98e-207
Identity = 272/298 (91.28%), Postives = 282/298 (94.63%), Query Frame = 0


Query: 2   WSLQAGTFLHLDHIL--FDRRECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDV 61
           W +      HL H++  +  RECSEVHVAHSGHHIQDCLG+TSA RRSFHSWVTGSINDV
Sbjct: 179 WKILIKGLSHLLHVIPVYACRECSEVHVAHSGHHIQDCLGSTSAMRRSFHSWVTGSINDV 238

Query: 62  LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKK 121
           LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPI+MIGKK
Sbjct: 239 LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRMIGKK 298

Query: 122 VIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGV 181
           VIDRGGNMEEPKPW+SC+SYPLLDFDTQGA QRFAPPLP+DVPRIAQETI AYETVRYGV
Sbjct: 299 VIDRGGNMEEPKPWQSCESYPLLDFDTQGASQRFAPPLPDDVPRIAQETIEAYETVRYGV 358

Query: 182 RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH 241
           RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH
Sbjct: 359 RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH 418

Query: 242 VRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA 297
           VRDPKGPPLIGTLKRFYGKAPAVVEVC+QAGATIPKKYLPMMRLDIVLPD EEARSVA
Sbjct: 419 VRDPKGPPLIGTLKRFYGKAPAVVEVCMQAGATIPKKYLPMMRLDIVLPDGEEARSVA 476

[Close]

BLAST of Cucsat.G8884.T11 vs. NCBI nr
Match: KAA0063366.1 (APO protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 581 bits (1498), Expect = 3.21e-206
Identity = 272/299 (90.97%), Postives = 281/299 (93.98%), Query Frame = 0


Query: 2   WSLQAGTFLHLDHIL---FDRRECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSIND 61
           W +      HL H++     R ECSEVHVAHSGHHIQDCLG+TSA RRSFHSWVTGSIND
Sbjct: 176 WKILIKGLSHLLHVIPVYACRSECSEVHVAHSGHHIQDCLGSTSAMRRSFHSWVTGSIND 235

Query: 62  VLVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGK 121
           VLVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPI+MIGK
Sbjct: 236 VLVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRMIGK 295

Query: 122 KVIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYG 181
           KVIDRGGNMEEPKPW+SC+SYPLLDFDTQGA QRFAPPLP+DVPRIAQETI AYETVRYG
Sbjct: 296 KVIDRGGNMEEPKPWQSCESYPLLDFDTQGASQRFAPPLPDDVPRIAQETIEAYETVRYG 355

Query: 182 VRMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVW 241
           VRMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVW
Sbjct: 356 VRMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVW 415

Query: 242 HVRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA 297
           HVRDPKGPPLIGTLKRFYGKAPAVVEVC+QAGATIPKKYLPMMRLDIVLPD EEARSVA
Sbjct: 416 HVRDPKGPPLIGTLKRFYGKAPAVVEVCMQAGATIPKKYLPMMRLDIVLPDGEEARSVA 474

[Close]

BLAST of Cucsat.G8884.T11 vs. NCBI nr
Match: XP_038897981.1 (APO protein 1, chloroplastic [Benincasa hispida] >XP_038897983.1 APO protein 1, chloroplastic [Benincasa hispida] >XP_038897984.1 APO protein 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 560 bits (1444), Expect = 1.75e-198
Identity = 263/298 (88.26%), Postives = 275/298 (92.28%), Query Frame = 0


Query: 2   WSLQAGTFLHLDHIL--FDRRECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDV 61
           W +      HL H++  +  RECSEVHVAHSGHHIQDCLG TSA RRSFHSWVTGSINDV
Sbjct: 146 WKILIKGLSHLLHVIPVYACRECSEVHVAHSGHHIQDCLGPTSAMRRSFHSWVTGSINDV 205

Query: 62  LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKK 121
           LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPI+MIGKK
Sbjct: 206 LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRMIGKK 265

Query: 122 VIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGV 181
           VIDRGGN+EEPKPW++ DSYPLLDFDTQ A QRFAPPLPEDVPRIAQET+ AYETVRYGV
Sbjct: 266 VIDRGGNIEEPKPWQAADSYPLLDFDTQRASQRFAPPLPEDVPRIAQETMEAYETVRYGV 325

Query: 182 RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH 241
           R LM+KYTVKACGYC EVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLP NYVWH
Sbjct: 326 RRLMRKYTVKACGYCSEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPPNYVWH 385

Query: 242 VRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA 297
           VRDPKGP LIG LKRFYGKAPAVVEVC+QAGATIP+KYLPMMRLDIVLPDSEEARSVA
Sbjct: 386 VRDPKGPTLIGALKRFYGKAPAVVEVCMQAGATIPEKYLPMMRLDIVLPDSEEARSVA 443

[Close]

BLAST of Cucsat.G8884.T11 vs. ExPASy TrEMBL
Match: A0A0A0L4B9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G617380 PE=4 SV=1)

HSP 1 Score: 600 bits (1547), Expect = 1.78e-214
Identity = 282/298 (94.63%), Postives = 286/298 (95.97%), Query Frame = 0


Query: 2   WSLQAGTFLHLDHIL--FDRRECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDV 61
           W +      HL H++  +  RECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDV
Sbjct: 146 WKILIKGLSHLLHVIPVYACRECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDV 205

Query: 62  LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKK 121
           LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKK
Sbjct: 206 LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKK 265

Query: 122 VIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGV 181
           VIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGV
Sbjct: 266 VIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGV 325

Query: 182 RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH 241
           RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH
Sbjct: 326 RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH 385

Query: 242 VRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA 297
           VRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA
Sbjct: 386 VRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA 443

[Close]

BLAST of Cucsat.G8884.T11 vs. ExPASy TrEMBL
Match: A0A1S3CM36 (APO protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502498 PE=4 SV=1)

HSP 1 Score: 583 bits (1503), Expect = 8.89e-208
Identity = 272/298 (91.28%), Postives = 282/298 (94.63%), Query Frame = 0


Query: 2   WSLQAGTFLHLDHIL--FDRRECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDV 61
           W +      HL H++  +  RECSEVHVAHSGHHIQDCLG+TSA RRSFHSWVTGSINDV
Sbjct: 146 WKILIKGLSHLLHVIPVYACRECSEVHVAHSGHHIQDCLGSTSAMRRSFHSWVTGSINDV 205

Query: 62  LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKK 121
           LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPI+MIGKK
Sbjct: 206 LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRMIGKK 265

Query: 122 VIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGV 181
           VIDRGGNMEEPKPW+SC+SYPLLDFDTQGA QRFAPPLP+DVPRIAQETI AYETVRYGV
Sbjct: 266 VIDRGGNMEEPKPWQSCESYPLLDFDTQGASQRFAPPLPDDVPRIAQETIEAYETVRYGV 325

Query: 182 RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH 241
           RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH
Sbjct: 326 RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH 385

Query: 242 VRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA 297
           VRDPKGPPLIGTLKRFYGKAPAVVEVC+QAGATIPKKYLPMMRLDIVLPD EEARSVA
Sbjct: 386 VRDPKGPPLIGTLKRFYGKAPAVVEVCMQAGATIPKKYLPMMRLDIVLPDGEEARSVA 443

[Close]

BLAST of Cucsat.G8884.T11 vs. ExPASy TrEMBL
Match: A0A5D3DXA7 (APO protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003310 PE=4 SV=1)

HSP 1 Score: 583 bits (1503), Expect = 2.89e-207
Identity = 272/298 (91.28%), Postives = 282/298 (94.63%), Query Frame = 0


Query: 2   WSLQAGTFLHLDHIL--FDRRECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDV 61
           W +      HL H++  +  RECSEVHVAHSGHHIQDCLG+TSA RRSFHSWVTGSINDV
Sbjct: 179 WKILIKGLSHLLHVIPVYACRECSEVHVAHSGHHIQDCLGSTSAMRRSFHSWVTGSINDV 238

Query: 62  LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKK 121
           LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPI+MIGKK
Sbjct: 239 LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRMIGKK 298

Query: 122 VIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGV 181
           VIDRGGNMEEPKPW+SC+SYPLLDFDTQGA QRFAPPLP+DVPRIAQETI AYETVRYGV
Sbjct: 299 VIDRGGNMEEPKPWQSCESYPLLDFDTQGASQRFAPPLPDDVPRIAQETIEAYETVRYGV 358

Query: 182 RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH 241
           RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH
Sbjct: 359 RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH 418

Query: 242 VRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA 297
           VRDPKGPPLIGTLKRFYGKAPAVVEVC+QAGATIPKKYLPMMRLDIVLPD EEARSVA
Sbjct: 419 VRDPKGPPLIGTLKRFYGKAPAVVEVCMQAGATIPKKYLPMMRLDIVLPDGEEARSVA 476

[Close]

BLAST of Cucsat.G8884.T11 vs. ExPASy TrEMBL
Match: A0A5A7VAB0 (APO protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1505G00410 PE=4 SV=1)

HSP 1 Score: 581 bits (1498), Expect = 1.55e-206
Identity = 272/299 (90.97%), Postives = 281/299 (93.98%), Query Frame = 0


Query: 2   WSLQAGTFLHLDHIL---FDRRECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSIND 61
           W +      HL H++     R ECSEVHVAHSGHHIQDCLG+TSA RRSFHSWVTGSIND
Sbjct: 176 WKILIKGLSHLLHVIPVYACRSECSEVHVAHSGHHIQDCLGSTSAMRRSFHSWVTGSIND 235

Query: 62  VLVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGK 121
           VLVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPI+MIGK
Sbjct: 236 VLVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRMIGK 295

Query: 122 KVIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYG 181
           KVIDRGGNMEEPKPW+SC+SYPLLDFDTQGA QRFAPPLP+DVPRIAQETI AYETVRYG
Sbjct: 296 KVIDRGGNMEEPKPWQSCESYPLLDFDTQGASQRFAPPLPDDVPRIAQETIEAYETVRYG 355

Query: 182 VRMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVW 241
           VRMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVW
Sbjct: 356 VRMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVW 415

Query: 242 HVRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA 297
           HVRDPKGPPLIGTLKRFYGKAPAVVEVC+QAGATIPKKYLPMMRLDIVLPD EEARSVA
Sbjct: 416 HVRDPKGPPLIGTLKRFYGKAPAVVEVCMQAGATIPKKYLPMMRLDIVLPDGEEARSVA 474

[Close]

BLAST of Cucsat.G8884.T11 vs. ExPASy TrEMBL
Match: A0A6J1IPM3 (APO protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111477059 PE=4 SV=1)

HSP 1 Score: 553 bits (1424), Expect = 9.38e-196
Identity = 261/298 (87.58%), Postives = 271/298 (90.94%), Query Frame = 0


Query: 2   WSLQAGTFLHLDHIL--FDRRECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDV 61
           W +      HL H++  +  RECSEVHVA SGHHIQDCLG T+  RRSFHSWVTGSINDV
Sbjct: 146 WKILIKGLSHLLHVIPVYACRECSEVHVAQSGHHIQDCLGPTNEKRRSFHSWVTGSINDV 205

Query: 62  LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKK 121
           LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPI+MIGKK
Sbjct: 206 LVPIESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRMIGKK 265

Query: 122 VIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGV 181
           VIDRGGN+EEPKPW+S DSYPLLDFDTQGA QRFAPPLP DVPRIAQETI AYETVR GV
Sbjct: 266 VIDRGGNIEEPKPWQSADSYPLLDFDTQGASQRFAPPLPVDVPRIAQETIEAYETVRSGV 325

Query: 182 RMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWH 241
           RMLM+KYTVKACGYC EVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLP NYVWH
Sbjct: 326 RMLMRKYTVKACGYCSEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPPNYVWH 385

Query: 242 VRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA 297
           V DPKG PLIGTLKRFYGKAPAVVEVC+QAGA IPKKY PMMRLDIVLPDSEEARSVA
Sbjct: 386 VPDPKGSPLIGTLKRFYGKAPAVVEVCMQAGAQIPKKYFPMMRLDIVLPDSEEARSVA 443

The following BLAST results are available for this feature:

BLAST of Cucsat.G8884.T11 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIR4	7.4e-121	66.67	APO protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APO1 PE=2 SV=1	[more]
Q8W4A5	2.0e-78	49.10	APO protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APO2 PE=2 SV=1	[more]
Q9FH50	7.6e-65	41.41	APO protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=APO3 PE=2 SV=1	[more]
Q9LSZ0	1.5e-44	36.02	APO protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=APO4 PE=2 SV=2	[more]

BLAST of Cucsat.G8884.T11 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149527.1	3.68e-214	94.63	APO protein 1, chloroplastic [Cucumis sativus] >KGN54971.1 hypothetical protein ...	[more]
XP_008464665.1	1.84e-207	91.28	PREDICTED: APO protein 1, chloroplastic [Cucumis melo]	[more]
TYK28069.1	5.98e-207	91.28	APO protein 1 [Cucumis melo var. makuwa]	[more]
KAA0063366.1	3.21e-206	90.97	APO protein 1 [Cucumis melo var. makuwa]	[more]
XP_038897981.1	1.75e-198	88.26	APO protein 1, chloroplastic [Benincasa hispida] >XP_038897983.1 APO protein 1, ...	[more]

BLAST of Cucsat.G8884.T11 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4B9	1.78e-214	94.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G617380 PE=4 SV=1	[more]
A0A1S3CM36	8.89e-208	91.28	APO protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502498 PE=4 SV=1	[more]
A0A5D3DXA7	2.89e-207	91.28	APO protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003310...	[more]
A0A5A7VAB0	1.55e-206	90.97	APO protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1505G00410...	[more]
A0A6J1IPM3	9.38e-196	87.58	APO protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111477059 PE=4 SV...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023342	APO domain	PFAM	PF05634	APO_RNA-bind	coord: 20..122 e-value: 4.1E-56 score: 189.6 coord: 163..275 e-value: 3.5E-22 score: 78.8
IPR023342	APO domain	PROSITE	PS51499	APO	coord: 18..103 score: 26.57424
IPR023342	APO domain	PROSITE	PS51499	APO	coord: 190..275 score: 26.555983
None	No IPR available	PANTHER	PTHR10388:SF53	APO PROTEIN 1, CHLOROPLASTIC	coord: 20..297
None	No IPR available	PANTHER	PTHR10388	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1	coord: 20..297

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G8884	Cucsat.G8884	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G8884.T11.E1	Cucsat.G8884.T11.E1	exon
Cucsat.G8884.T11.E2	Cucsat.G8884.T11.E2	exon
Cucsat.G8884.T11.E3	Cucsat.G8884.T11.E3	exon
Cucsat.G8884.T11.E4	Cucsat.G8884.T11.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G8884.T11.C2	Cucsat.G8884.T11.C2	CDS
Cucsat.G8884.T11.C1	Cucsat.G8884.T11.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G8884.T11	Cucsat.G8884.T11-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding