Cucsat.G8736.T19 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G8736.T19
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	R3H domain containing protein
Location	ctg1558: 1805810 .. 1810548 (+)
RNA-Seq Expression	Cucsat.G8736.T19
Synteny	Cucsat.G8736.T19

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGTTGTTAGGTTTTTTTGTCTGTAGTAACTAAAAAAAATAAGCTTTACTAAGACTAAATTCCAAACTTTTTGTGCTCAGGGTTCCTTTTCCCATTCCCAATTCAATTATACCTTCTAGTCTTATTTAGTAGTTTTATGTATGATATGTGTCTCTCCTATATGTACCACGTTTTTGTTGCGAATTGCATTTAAGTCTCAAAAGACTATTGCGCTTTATTAGCTTTAAAAAAGAGTTTGACTTTCTATCTTCAAACTTGCATTAGTGTACACACATTCTAATCTTCAAAAACAGCTTTTCTCTCTCTCTTTTTCCCCCTTTATGCTAGGACAAGGTAGATTCTTGTGTGTTTGAACGGAGTTGTTTACTAAAATATAAATATTCTAGAACCTTAAGTAGATATCTAATTGTTAGTACTTGCTATTACATAATCCTACATTGTACTCTTTTCGTTAACTTTTTCCATTTTTTTTTTCCGTTATGGCTGATATCTGACTCTCCAGGTGGAGGAGTTGGCCTTTCTTGTTAAGGACAACCTCCCCAGCAAGCATCTTATTCTATCAATGGAAGAAACCTTCATCAACTTTCTTCACGATGAAACCAGGTAATTGTTGGATGATGGTTAGATGATGTTAGTTATTGAATTTTAAAATATTTTCGTATTTCATTCCGCCAATGGTGATGGGACAAGTGGAAGATTATGCGCTCAAACAACAGTAGCTATGTATCTAGATTGGATCCTGTTAGATACTAGATATTTAGTTTGTGTTGGTTAAGGGGCATAAGGGGTTATGGGGGAACAAACAAAATGGCTGTTGGAAGAAAAAAAAAATGAAGAACCTTCCAATGAACATACAACGACACAAACTAAAGAAAAGCTTTAGATTCAAATTCAAACAAATGGGGTAGTTTGGTTGCTTATTGGGCTGGATCTCCAATTCATTTGCAGGCTGAAGAGAAGGTTGTTGGTTATGTGTTTTGATTATGCTAAAAAAAATGGAAGAGGAAGAAGAAGAAGAAAAAGTTTCCCGATTTTGTGATCATGAATGTAAGCTCACCTTGAGGGCAAGGTGTCTTTGACGGGCGGACTAATGTTAGGTACTAGATATGTAGTTTGTGTTGGTTAAGGTGTACAAGGGTAATTAGATAGATACGGAGTTACTAGTAGTTATTGTATGAGGGTAGTTACTAGAGTGGTTACTACTTATTATAAATAGGAGGGTAAGTGGGTGAGGAATTGGTTATTCTGTTGAGTGATCTAGGGCTTGAGTGAGAATACTCAAGAGGGAGGTTCTAAGTGCGTTATACTTGGGTTTTTCTTGTATTTCTTTATAGTGATATTTCATTATATACAAATCGTGTTCTTGTTAGGAAGTATCCTAATAGATCCCGCCCCCCATAAGAAACAATTACTTTGTGGGTAATATCCTAATGGGCTGCCCTTGCCATTTTTCTATGAACACTTTGGAGCAGAAAGGTCAATTTTTGTTATCTCTCAATAGTTGTTTGGCTAGCTAATCTAGAAGATAGTAACCAGTATTTCTTCGTTTGGTTCTTAACTCACATTATGGTTCTTGCCCATTGGAGAATATCTTGAGGTTTACATTGTTCTTTACCCATGGCTTTTATGGTGACCGCTAACTTTTTAGAATTTATTTGAATAGCAGTTCAGATGGAATCTTGGAGTTGAAACCAATGGATTCATACAACCGTCTTCTTTTGCATCGCCTTGCTGATATTTTTGGGTACATTTTTTCCCTTCCATGCATATTATTTGTCTAGTTCGTTGTGAGGTTGAATTTTTTATTTTCTTGTTACTCATGTCAGCCTCTCTAACTTTGTACTTCTCCCCATTCCTCTGTCAGACTTGGCCATGTATCAGTTGGTGAAGGTGATAATAGACACTTGGTTTTGGAGCGATACCCAGAGTCATCAATGTATGTGAACAATTCTAGATCTGACTTCTTTTTGTTCAATATCTTCATAACGTAAATTGTTATTGATAAAACATTTTATCTGGTCATCTATAGCAATTATACATTGAAAGAATTGAATAAGCCTCTTCCTTATTCTTCTTTCCTAGAAGTCTTCTCCACAGAAAGATCAAAGAAGTTCTACTTTAGTTTGGAGTTAAGGCATTTGAGATTTGTTATTATGAATATTCAAGTACAGACAGTATACCACCCTCTCTCTCCCCTGCTTTTGTATTCCAAGTTCTCAGCCGCTGCTCTCATTCCAAATTCTGCTTGTTTTCATTATTGGAAAAGGAGACTTCCTCACGTCCACTCAGGGAAAGAGTTGGACTACACAGCAATGCCATTGGCTATATGAAAAGATGGACTTCTTGTAGTTCTCATCAAACAAGTTTTATTTGTGACAGAAGTCCTTTATTTCTTCATCATATTCATACTTCATTTATTTCTTAGTTATGAATATATTTTGGGATCCAATCTTTCTTTCATCTTTCAAATAAGAAACCAAATTTTATGATATAGCTTAAAGTGAAACTAGGCTTCTTATATTTACAAACTGTGGTACCATAGGGACATGGTAGGACGGGTGATACACTGATACTAATAAAGCTCATTTGTTCATAAACTTTTTGTCTATTGCAGACCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTATGATGAACCTCAAATGTCAACGATACCACACCAACTATTAAGGAGAAAGGAAAATTCTTCTGGTATACTTATTATTTTGTGACGGCATAAGCAGTACCTGCAATTGTTTCAGTTCATGCTATTTAGTATCAATTACAATTTGATCATCAGAAAGTTTTCGTGTGCATTTATTGTTAGAATTAGTGGGCTTTGCTCAAGGAAGGATTTATTCTATTATCCTTTTCTTTTTTATCATAAGTTGTAACCTATTTATCTTCCCTCTTAAATCTTTTGTTAATATGAGAAATTAATAAGACAGTCAATTGTGGTTTTTCTCCCAGCACTCAGGTTTCCATGTAATTTGGTGTCTACTTTACTTTACCGCTTTTAACATTTATAATGGACTTAAGGTCATTTGAAGGCTGCAGAGGAGATGGTATGATGAACATGGAATATTTATTTGTGAAAATTCCCTACTGTGCTCTCTCTCTCTCTCTTCACTTTAAATAGCATTAGAAGGAATGCCACGGTATGAATAGAGTAGAATAAAAGGTCTTCTGACTTCCGAGTAGGATTTGATAGGGATTCTGGATCTGAAGTTTGAAGTTTAGGGTGAACACGACCTCTTTAATTGAACGAACGAGTATGTATGCAAATATCTCATTTTAGGGTAGAAAATAAAATGAAAAATGTTGTTCAAGTTTGCACATTTAACAAAGTTTGTTTAATGTCAGTTCATCATATTGGAAGTTCTCATTTATTATGTTGAATGCCTATTTATTTTACTTGCAGATTTACTTTCAAAAAATTACAAGAAACTGAGTTGCCTATACTTGATGTTGTGTTTCAGCGAGTTCAACAAAATCATCTCCTCAACGTTCGCTTGAAGAGAGAGAAGCAGCTTATCTGGCTGTCCGTGAGCGAATTTTCATGACGCACGTTGGAGAGGATAACGAGCCCCTGAAACCAAAGCCACGATGTGATCCTGCAGTTGCACGACGCATGATTGCTCATGCACTGGGACAGCGAGTTAATTCATTATCAGAGGATACTAATTGCCATCAGAAAGAGCAAGGAGGTGTCACGAACAATGCATACATCCAAGCAAGAGATTCAAAGTTGCCTGATTCTACTGTGGAAGCCATTAACAAAACCATTTCACGGTCGGATCAATGTGTGAACTTGAAGAATGAATTGGATAAGAATTGTAATCCAGACGTGTCATTGGCAAGGGGAAGTACTGCTGCCAAAATGAAACCTGCCAAGAGTTATCCAAAGGCAAGTCATGTCGACAATGAGCACTTGAAGAGAGAACATTTAGGAGCTGCAAAGAGGATGTTTTCTCAGGCTTTAGGCAAGCACTGCCGAAGGAATGAATCTCTTCAAACTCGTGGGGAAGCAGATTAAAATGGAAACAAGATTCAAATACATCTGCAGTAGCTATTGTTTTCTGGCATGATCTTTTGTCCTATTCACAATTTTTTGAGTTGTCAGGATTCCTGGTGCTAACAAAAAGATGAATGGGACTGTGTGATGACAAATTTGTCTATGTCGCATGGCCAATGGTCGTCAATGGTGTCATTGGCGAAATGATCAGGGTTGGATGCAATGCCTATGGCTGCTTTCATGTTGCCAATTCAGTTAGCAAATATGAAATCTGACCTTGCGTTCTCTAGCTTATTTATTCTGGGAATTCAATCTGGTCGTTTAAGCAGCACTGTGTGAGGAGATTGAACTATAGGTTCGAGTGGAGTTGTGTGTAAAGGTTGTGGAAATCAATTGGGATCGAATCTGTTCACTGATTGAGAGCACATAGCGGGTTGTGTCGGGTTAACATAGAGGTTTCTAACTTAAATCTGTGTTGGTACTTGACTGTTTATAGCCTCTCTCTATCTTTGCTGATGGCACAAATAGCGTCTCTTGGATTGTCATGGTTATGTACCTGACTCGACGATATCGGGCAATGCACTTTGTTTTATGTGAAATTGTAGTGGTTGAATTTTAAGCTTTATTGTTCCCTTTGAAATCTAGAGGTATTGATACTTTCTTTTGAATGAAAATCGAAATGTACATGGATTTCAAGTATCTTTGATTTTTTGTCTAATGGAA

Coding sequence (CDS)

ATGACGCACGTTGGAGAGGATAACGAGCCCCTGAAACCAAAGCCACGATGTGATCCTGCAGTTGCACGACGCATGATTGCTCATGCACTGGGACAGCGAGTTAATTCATTATCAGAGGATACTAATTGCCATCAGAAAGAGCAAGGAGGTGTCACGAACAATGCATACATCCAAGCAAGAGATTCAAAGTTGCCTGATTCTACTGTGGAAGCCATTAACAAAACCATTTCACGGTCGGATCAATGTGTGAACTTGAAGAATGAATTGGATAAGAATTGTAATCCAGACGTGTCATTGGCAAGGGGAAGTACTGCTGCCAAAATGAAACCTGCCAAGAGTTATCCAAAGGCAAGTCATGTCGACAATGAGCACTTGAAGAGAGAACATTTAGGAGCTGCAAAGAGGATGTTTTCTCAGGCTTTAGGCAAGCACTGCCGAAGGAATGAATCTCTTCAAACTCGTGGGGAAGCAGATTAA

Protein sequence

MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASHVDNEHLKREHLGAAKRMFSQALGKHCRRNESLQTRGEAD

Homology

[Close]

BLAST of Cucsat.G8736.T19 vs. NCBI nr
Match: XP_004152835.1 (R3H domain-containing protein 1 isoform X2 [Cucumis sativus] >KGN61245.1 hypothetical protein Csa_006627 [Cucumis sativus])

HSP 1 Score: 319 bits (818), Expect = 1.01e-107
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR 60
           MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR
Sbjct: 152 MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR 211

Query: 61  DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASHV 120
           DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASHV
Sbjct: 212 DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASHV 271

Query: 121 DNEHLKREHLGAAKRMFSQALGKHCRRNESLQTRGEAD 158
           DNEHLKREHLGAAKRMFSQALGKHCR+NESLQTRGEAD
Sbjct: 272 DNEHLKREHLGAAKRMFSQALGKHCRKNESLQTRGEAD 309

[Close]

BLAST of Cucsat.G8736.T19 vs. NCBI nr
Match: XP_011648991.1 (R3H domain-containing protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 319 bits (818), Expect = 1.05e-107
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR 60
           MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR
Sbjct: 153 MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR 212

Query: 61  DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASHV 120
           DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASHV
Sbjct: 213 DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASHV 272

Query: 121 DNEHLKREHLGAAKRMFSQALGKHCRRNESLQTRGEAD 158
           DNEHLKREHLGAAKRMFSQALGKHCR+NESLQTRGEAD
Sbjct: 273 DNEHLKREHLGAAKRMFSQALGKHCRKNESLQTRGEAD 310

[Close]

BLAST of Cucsat.G8736.T19 vs. NCBI nr
Match: XP_008441899.1 (PREDICTED: uncharacterized protein LOC103485903 isoform X2 [Cucumis melo])

HSP 1 Score: 275 bits (702), Expect = 4.42e-90
Identity = 142/160 (88.75%), Postives = 149/160 (93.12%), Query Frame = 0


Query: 1   MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR 60
           MTH+GEDNEPLKPKPRCDPAVARRMIAHALGQRVNS  EDTNCH+K QG V NNAYIQAR
Sbjct: 152 MTHIGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSFPEDTNCHRKVQG-VANNAYIQAR 211

Query: 61  DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASH- 120
           DSKLP+STVEAINKTIS+SDQC+NLKNE DKNCNP+VSLARGSTAAKMK  KS PKASH 
Sbjct: 212 DSKLPNSTVEAINKTISQSDQCMNLKNESDKNCNPNVSLARGSTAAKMKLDKSSPKASHD 271

Query: 121 VDNEHLKREHLGAAKRMFSQALGKHCRRNESLQTR-GEAD 158
           VDNEHLKREHLGAAKRMFSQALGKHCR+NESLQTR GEAD
Sbjct: 272 VDNEHLKREHLGAAKRMFSQALGKHCRKNESLQTRCGEAD 310

[Close]

BLAST of Cucsat.G8736.T19 vs. NCBI nr
Match: XP_008441898.1 (PREDICTED: uncharacterized protein LOC103485903 isoform X1 [Cucumis melo])

HSP 1 Score: 275 bits (702), Expect = 4.57e-90
Identity = 142/160 (88.75%), Postives = 149/160 (93.12%), Query Frame = 0


Query: 1   MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR 60
           MTH+GEDNEPLKPKPRCDPAVARRMIAHALGQRVNS  EDTNCH+K QG V NNAYIQAR
Sbjct: 153 MTHIGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSFPEDTNCHRKVQG-VANNAYIQAR 212

Query: 61  DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASH- 120
           DSKLP+STVEAINKTIS+SDQC+NLKNE DKNCNP+VSLARGSTAAKMK  KS PKASH 
Sbjct: 213 DSKLPNSTVEAINKTISQSDQCMNLKNESDKNCNPNVSLARGSTAAKMKLDKSSPKASHD 272

Query: 121 VDNEHLKREHLGAAKRMFSQALGKHCRRNESLQTR-GEAD 158
           VDNEHLKREHLGAAKRMFSQALGKHCR+NESLQTR GEAD
Sbjct: 273 VDNEHLKREHLGAAKRMFSQALGKHCRKNESLQTRCGEAD 311

[Close]

BLAST of Cucsat.G8736.T19 vs. NCBI nr
Match: KAA0047706.1 (R3H domain-containing protein 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 275 bits (702), Expect = 1.22e-89
Identity = 142/160 (88.75%), Postives = 149/160 (93.12%), Query Frame = 0


Query: 1   MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR 60
           MTH+GEDNEPLKPKPRCDPAVARRMIAHALGQRVNS  EDTNCH+K QG V NNAYIQAR
Sbjct: 184 MTHIGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSFPEDTNCHRKVQG-VANNAYIQAR 243

Query: 61  DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASH- 120
           DSKLP+STVEAINKTIS+SDQC+NLKNE DKNCNP+VSLARGSTAAKMK  KS PKASH 
Sbjct: 244 DSKLPNSTVEAINKTISQSDQCMNLKNESDKNCNPNVSLARGSTAAKMKLDKSSPKASHD 303

Query: 121 VDNEHLKREHLGAAKRMFSQALGKHCRRNESLQTR-GEAD 158
           VDNEHLKREHLGAAKRMFSQALGKHCR+NESLQTR GEAD
Sbjct: 304 VDNEHLKREHLGAAKRMFSQALGKHCRKNESLQTRCGEAD 342

[Close]

BLAST of Cucsat.G8736.T19 vs. ExPASy TrEMBL
Match: A0A0A0LH15 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074070 PE=4 SV=1)

HSP 1 Score: 319 bits (818), Expect = 4.91e-108
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR 60
           MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR
Sbjct: 152 MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR 211

Query: 61  DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASHV 120
           DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASHV
Sbjct: 212 DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASHV 271

Query: 121 DNEHLKREHLGAAKRMFSQALGKHCRRNESLQTRGEAD 158
           DNEHLKREHLGAAKRMFSQALGKHCR+NESLQTRGEAD
Sbjct: 272 DNEHLKREHLGAAKRMFSQALGKHCRKNESLQTRGEAD 309

[Close]

BLAST of Cucsat.G8736.T19 vs. ExPASy TrEMBL
Match: A0A1S3B4H8 (uncharacterized protein LOC103485903 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485903 PE=4 SV=1)

HSP 1 Score: 275 bits (702), Expect = 2.14e-90
Identity = 142/160 (88.75%), Postives = 149/160 (93.12%), Query Frame = 0


Query: 1   MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR 60
           MTH+GEDNEPLKPKPRCDPAVARRMIAHALGQRVNS  EDTNCH+K QG V NNAYIQAR
Sbjct: 152 MTHIGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSFPEDTNCHRKVQG-VANNAYIQAR 211

Query: 61  DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASH- 120
           DSKLP+STVEAINKTIS+SDQC+NLKNE DKNCNP+VSLARGSTAAKMK  KS PKASH 
Sbjct: 212 DSKLPNSTVEAINKTISQSDQCMNLKNESDKNCNPNVSLARGSTAAKMKLDKSSPKASHD 271

Query: 121 VDNEHLKREHLGAAKRMFSQALGKHCRRNESLQTR-GEAD 158
           VDNEHLKREHLGAAKRMFSQALGKHCR+NESLQTR GEAD
Sbjct: 272 VDNEHLKREHLGAAKRMFSQALGKHCRKNESLQTRCGEAD 310

[Close]

BLAST of Cucsat.G8736.T19 vs. ExPASy TrEMBL
Match: A0A1S3B4G2 (uncharacterized protein LOC103485903 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485903 PE=4 SV=1)

HSP 1 Score: 275 bits (702), Expect = 2.21e-90
Identity = 142/160 (88.75%), Postives = 149/160 (93.12%), Query Frame = 0


Query: 1   MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR 60
           MTH+GEDNEPLKPKPRCDPAVARRMIAHALGQRVNS  EDTNCH+K QG V NNAYIQAR
Sbjct: 153 MTHIGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSFPEDTNCHRKVQG-VANNAYIQAR 212

Query: 61  DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASH- 120
           DSKLP+STVEAINKTIS+SDQC+NLKNE DKNCNP+VSLARGSTAAKMK  KS PKASH 
Sbjct: 213 DSKLPNSTVEAINKTISQSDQCMNLKNESDKNCNPNVSLARGSTAAKMKLDKSSPKASHD 272

Query: 121 VDNEHLKREHLGAAKRMFSQALGKHCRRNESLQTR-GEAD 158
           VDNEHLKREHLGAAKRMFSQALGKHCR+NESLQTR GEAD
Sbjct: 273 VDNEHLKREHLGAAKRMFSQALGKHCRKNESLQTRCGEAD 311

[Close]

BLAST of Cucsat.G8736.T19 vs. ExPASy TrEMBL
Match: A0A5A7U0E9 (R3H domain-containing protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G002180 PE=4 SV=1)

HSP 1 Score: 275 bits (702), Expect = 5.91e-90
Identity = 142/160 (88.75%), Postives = 149/160 (93.12%), Query Frame = 0


Query: 1   MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR 60
           MTH+GEDNEPLKPKPRCDPAVARRMIAHALGQRVNS  EDTNCH+K QG V NNAYIQAR
Sbjct: 184 MTHIGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSFPEDTNCHRKVQG-VANNAYIQAR 243

Query: 61  DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASH- 120
           DSKLP+STVEAINKTIS+SDQC+NLKNE DKNCNP+VSLARGSTAAKMK  KS PKASH 
Sbjct: 244 DSKLPNSTVEAINKTISQSDQCMNLKNESDKNCNPNVSLARGSTAAKMKLDKSSPKASHD 303

Query: 121 VDNEHLKREHLGAAKRMFSQALGKHCRRNESLQTR-GEAD 158
           VDNEHLKREHLGAAKRMFSQALGKHCR+NESLQTR GEAD
Sbjct: 304 VDNEHLKREHLGAAKRMFSQALGKHCRKNESLQTRCGEAD 342

[Close]

BLAST of Cucsat.G8736.T19 vs. ExPASy TrEMBL
Match: A0A5D3CAI2 (R3H domain-containing protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001710 PE=4 SV=1)

HSP 1 Score: 275 bits (702), Expect = 1.09e-88
Identity = 142/160 (88.75%), Postives = 149/160 (93.12%), Query Frame = 0


Query: 1   MTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQAR 60
           MTH+GEDNEPLKPKPRCDPAVARRMIAHALGQRVNS  EDTNCH+K QG V NNAYIQAR
Sbjct: 281 MTHIGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSFPEDTNCHRKVQG-VANNAYIQAR 340

Query: 61  DSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASH- 120
           DSKLP+STVEAINKTIS+SDQC+NLKNE DKNCNP+VSLARGSTAAKMK  KS PKASH 
Sbjct: 341 DSKLPNSTVEAINKTISQSDQCMNLKNESDKNCNPNVSLARGSTAAKMKLDKSSPKASHD 400

Query: 121 VDNEHLKREHLGAAKRMFSQALGKHCRRNESLQTR-GEAD 158
           VDNEHLKREHLGAAKRMFSQALGKHCR+NESLQTR GEAD
Sbjct: 401 VDNEHLKREHLGAAKRMFSQALGKHCRKNESLQTRCGEAD 439

The following BLAST results are available for this feature:

BLAST of Cucsat.G8736.T19 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G8736.T19 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152835.1	1.01e-107	99.37	R3H domain-containing protein 1 isoform X2 [Cucumis sativus] >KGN61245.1 hypothe...	[more]
XP_011648991.1	1.05e-107	99.37	R3H domain-containing protein 1 isoform X1 [Cucumis sativus]	[more]
XP_008441899.1	4.42e-90	88.75	PREDICTED: uncharacterized protein LOC103485903 isoform X2 [Cucumis melo]	[more]
XP_008441898.1	4.57e-90	88.75	PREDICTED: uncharacterized protein LOC103485903 isoform X1 [Cucumis melo]	[more]
KAA0047706.1	1.22e-89	88.75	R3H domain-containing protein 1 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Cucsat.G8736.T19 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH15	4.91e-108	99.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074070 PE=4 SV=1	[more]
A0A1S3B4H8	2.14e-90	88.75	uncharacterized protein LOC103485903 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3B4G2	2.21e-90	88.75	uncharacterized protein LOC103485903 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7U0E9	5.91e-90	88.75	R3H domain-containing protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3CAI2	1.09e-88	88.75	R3H domain-containing protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=119469...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..123
None	No IPR available	PANTHER	PTHR15672:SF25	RNA-BINDING SUPPRESSOR OF PAS KINASE PROTEIN 1	coord: 6..151
None	No IPR available	PANTHER	PTHR15672	CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN	coord: 6..151

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G8736	Cucsat.G8736	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G8736.T19.E1	Cucsat.G8736.T19.E1	exon
Cucsat.G8736.T19.E2	Cucsat.G8736.T19.E2	exon
Cucsat.G8736.T19.E3	Cucsat.G8736.T19.E3	exon
Cucsat.G8736.T19.E4	Cucsat.G8736.T19.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G8736.T19.C1	Cucsat.G8736.T19.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G8736.T19	Cucsat.G8736.T19-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding