![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Cucsat.G592.T13 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTTAAGTTTAAGACTGATGCGGATATTTGTCAATGTTTTAGGCGAAAAGGCTCAAGGCTAAAATGTTGGCTGCAGCTGAACTTGCTGCTCTACGTCTTAACGATTTTCCATCATCTAACTATAAAGGCATACATACCAACCAAAGAGGTCGAGTATTTGGGCTTCTTGACAAGAATGGAGACGGTAGAATAAGTATTGAGGAACTTGTGGATGTCATGGAAGACCTTGGTGTTGGTGCCCCCGGAGAAGATGCGCGAGAGATGATGCAACTTCTAGATTCGAATAGTGATGGTTCTCTTAGCTCTGATGAATTCGACTTTTTTCAAAAACAGGTAAATTCTTCACCTTGTTTCAAGATAGTGAAATGATTCTGATTGCATATTTAGATCCCTGTGCACATAACTCCCAAAAACATCTGTCTTTTTTGTTGTGAAACAAAAATGAAATGATTTTTTTTTATAATAGTAAGTGTTAAACCAATTATCACTAAACCAAAGCCTAGCTGTGATTAATCTACACTTATATTCATATTAGTGCGGGCTATTTTTAAATATAACAAAATATACAATCTATCTACGATAGATCAAGATAAACTACTATGTGTCTATCATGGTCTATCATAGATCGATTGTGATATTTTACTATATTTGTAAATAATTTCAGAAATTTTGTCATTTAAAATAATCTCTCCAAGACGATTTATATCAATGTGTGGGACATGAAAATCGAGTCTTTAACCTTGAAGTTAATAGAATAAGTTTATGTTAATTGAGTTTGTTCATGTTGACAACAACCTCTCATGTCACAACCGTAATCTTTTATTTGAATTTTAATATTCAATCATATATTTTTCATCTTCACAAGGCCTTTCTCAAACCTGCATGTTCTTTACCCCAACGAATTAATATTGCATGTCTAAGATTACCAATGCAACTTGAAAAATGGAGAATTAGCTTTTAACAAAGTCAATTTGTTCTTAGGTCGAATTCATACGCAGCTTGGAGAACAGAGATGATCAATACAAGGTCATCCTAAATCATAAGCTCCAAAACGATGATGACACTGGTTTGATACAAGTCTATAGTGAAGAACTCGGCAATCGACTTGCCACATAGTCTTGACCGTGGACCCTCGATTTGTCTCAACAAGGGTAGGAAATTAAGTTCATTTGGAGTCACATATCTAGCCTCATTATTGTGAATAGATTGTTTATAAAGTTGAGAAGCAAGCCAATTCCTGTGCAACATTGTCATTTGGAGGTCTAATATTTTAATCAGAAAAAAAAATTGTAATCTACAAATGAAATGAAAAGAATCCAAATAGGATGAAGTAATAATGTATCGGAGATTTGTTTAGAAGATATAGAAAAGGAGGGAGAGATCTAATGATTA ATGTTGGCTGCAGCTGAACTTGCTGCTCTACGTCTTAACGATTTTCCATCATCTAACTATAAAGGCATACATACCAACCAAAGAGGTCGAGTATTTGGGCTTCTTGACAAGAATGGAGACGGTAGAATAAGTATTGAGGAACTTGTGGATGTCATGGAAGACCTTGGTGTTGGTGCCCCCGGAGAAGATGCGCGAGAGATGATGCAACTTCTAGATTCGAATAGTGATGGTTCTCTTAGCTCTGATGAATTCGACTTTTTTCAAAAACAGGTCGAATTCATACGCAGCTTGGAGAACAGAGATGATCAATACAAGGTCATCCTAAATCATAAGCTCCAAAACGATGATGACACTGGTTTGATACAAGTCTATAGTGAAGAACTCGGCAATCGACTTGCCACATAG MLAAAELAALRLNDFPSSNYKGIHTNQRGRVFGLLDKNGDGRISIEELVDVMEDLGVGAPGEDAREMMQLLDSNSDGSLSSDEFDFFQKQVEFIRSLENRDDQYKVILNHKLQNDDDTGLIQVYSEELGNRLAT Homology
BLAST of Cucsat.G592.T13 vs. ExPASy Swiss-Prot
Match: Q84R11 (Probable GTP diphosphokinase CRSH, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRSH PE=2 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 3.8e-40 Identity = 92/139 (66.19%), Postives = 112/139 (80.58%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. ExPASy Swiss-Prot
Match: Q6ATB4 (Probable GTP diphosphokinase CRSH1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CRSH1 PE=2 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 2.5e-36 Identity = 82/132 (62.12%), Postives = 104/132 (78.79%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. ExPASy Swiss-Prot
Match: Q75IS2 (Probable GTP diphosphokinase CRSH3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CRSH3 PE=2 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 1.9e-31 Identity = 78/139 (56.12%), Postives = 94/139 (67.63%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. ExPASy Swiss-Prot
Match: Q6ATB2 (Probable GTP diphosphokinase CRSH2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CRSH2 PE=2 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 7.2e-31 Identity = 77/143 (53.85%), Postives = 96/143 (67.13%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. ExPASy Swiss-Prot
Match: O22845 (Calmodulin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=CML5 PE=2 SV=2) HSP 1 Score: 63.2 bits (152), Expect = 2.7e-09 Identity = 43/120 (35.83%), Postives = 66/120 (55.00%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. NCBI nr
Match: XP_004147635.1 (probable GTP diphosphokinase CRSH, chloroplastic [Cucumis sativus] >KAE8650414.1 hypothetical protein Csa_010316 [Cucumis sativus]) HSP 1 Score: 262 bits (669), Expect = 4.05e-82 Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. NCBI nr
Match: XP_008439006.1 (PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic isoform X2 [Cucumis melo] >ADN34045.1 guanosine-3'5'-bis(diphosphate) 3'-pyrophosphohydrolase [Cucumis melo subsp. melo] >KAA0052146.1 putative GTP diphosphokinase CRSH [Cucumis melo var. makuwa] >TYK05111.1 putative GTP diphosphokinase CRSH [Cucumis melo var. makuwa]) HSP 1 Score: 258 bits (658), Expect = 1.65e-80 Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. NCBI nr
Match: XP_008439005.1 (PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 258 bits (658), Expect = 9.50e-80 Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. NCBI nr
Match: XP_023527746.1 (probable GTP diphosphokinase CRSH, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 248 bits (632), Expect = 1.31e-76 Identity = 128/134 (95.52%), Postives = 130/134 (97.01%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. NCBI nr
Match: XP_038891447.1 (probable GTP diphosphokinase CRSH, chloroplastic [Benincasa hispida]) HSP 1 Score: 247 bits (630), Expect = 2.54e-76 Identity = 128/134 (95.52%), Postives = 131/134 (97.76%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. ExPASy TrEMBL
Match: A0A5D3BZL5 (GTP diphosphokinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00150 PE=3 SV=1) HSP 1 Score: 258 bits (658), Expect = 7.98e-81 Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. ExPASy TrEMBL
Match: E5GC47 (GTP diphosphokinase OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1) HSP 1 Score: 258 bits (658), Expect = 7.98e-81 Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. ExPASy TrEMBL
Match: A0A1S3AXB7 (GTP diphosphokinase OS=Cucumis melo OX=3656 GN=LOC103483930 PE=3 SV=1) HSP 1 Score: 258 bits (658), Expect = 7.98e-81 Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. ExPASy TrEMBL
Match: A0A1S3AYD8 (GTP diphosphokinase OS=Cucumis melo OX=3656 GN=LOC103483930 PE=3 SV=1) HSP 1 Score: 258 bits (658), Expect = 4.60e-80 Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. ExPASy TrEMBL
Match: A0A6J1GUA2 (GTP diphosphokinase OS=Cucurbita moschata OX=3662 GN=LOC111457600 PE=3 SV=1) HSP 1 Score: 245 bits (626), Expect = 4.95e-76 Identity = 127/134 (94.78%), Postives = 129/134 (96.27%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. TAIR 10
Match: AT3G17470.1 (Ca2+-activated RelA/spot homolog ) HSP 1 Score: 165.6 bits (418), Expect = 2.7e-41 Identity = 92/139 (66.19%), Postives = 112/139 (80.58%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. TAIR 10
Match: AT2G43290.1 (Calcium-binding EF-hand family protein ) HSP 1 Score: 63.2 bits (152), Expect = 1.9e-10 Identity = 43/120 (35.83%), Postives = 66/120 (55.00%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. TAIR 10
Match: AT3G59440.1 (Calcium-binding EF-hand family protein ) HSP 1 Score: 59.7 bits (143), Expect = 2.1e-09 Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. TAIR 10
Match: AT4G12860.1 (EF hand calcium-binding protein family ) HSP 1 Score: 56.6 bits (135), Expect = 1.8e-08 Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = 0
BLAST of Cucsat.G592.T13 vs. TAIR 10
Match: AT3G07490.1 (ARF-GAP domain 11 ) HSP 1 Score: 54.7 bits (130), Expect = 6.7e-08 Identity = 34/105 (32.38%), Postives = 61/105 (58.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|