Cucsat.G5104.T3 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G5104.T3
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Transcription termination factor MTERF8
Location	ctg1227: 3815770 .. 3817182 (-)
RNA-Seq Expression	Cucsat.G5104.T3
Synteny	Cucsat.G5104.T3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCAGTGCATACCAGGCCATCACCCTCGCAAACCTCTTCTTTCACTTTCCAATGGCCAATTTTCTCCGCAAACCTTCTCTACTACGTCTCTATGCTCAAGACCTCCGGAATTTCGCACACAACAAAACCACTATTGGCCTCAATTTCCTTTCTTCTCTCTCTCAATCCCCTCAATCCCCTCAATCAACCAACCATCAGACACTCGATTACCTAATCCACACCATCGGCCTCTCCAAGGATTCAGCTCTCGCCGCTGCCAAGAAAATCCATCTCAAACCATCCTCGGATCCCGACTCTGTTCTTGCTCTCTTTAACGCCTATGGATTCACGCCCTCCCAGACCGCCAACATCTTTTGCAGACAACCCAGACTCCTTCTTGCTGATCCGGACAAAACACTCAAGCCCAAGTTCGAGTTTCTCTCCAAAAACGGCATATCTGGTAACTTTCTCGTCGACTTAATCTGTAGGGAGCCACATATTCTTCGAAGGAGCCTGGACAAGAAGATTGTTCCATGTTTTGATTTTCTAATAAATTTCTTTGGGTCTACTGATTGTATTGTTTCGTTATTTTGTACTACACATAGGACTCGTGTTTTGCACACGTTTTCTGAATTTATGGCTCCTAATATCGAAGTATTGAGAGCTAATGGGGTGCCCGATTCGAGCATTGCTAAACTGTTTTGGAAGCGCCCAGTTGCACTGTCCAGGGATGTGAAATGGTTTACTGACATTGTCGAGAAGACGAAGGAAAGGGGGTTCAATCCTTCGAGTTTGATGTTTATTAATGGGCTGTGTATAGTTTCATCGATGAGCAAGGACAGATGGTTATCGAAACTGCATATTTTTAGAAGTTATGGGTGGTCAGATGAGCAGTTTCAATCTATGTTTCTCAAGCAACCTTGTTTCATGAATAGGTCCGAGGAGGGTTTAAAAAGGGCATTGGATTTCTTTATGAACAAATGGGACTGGACACGGGAAGAAATTTACAGATACCCAATTGTGCTCATTCTTAGTTTTGAAAAGAGGGTGATGCCTAGGTCGTCTATCCTTCAGCACCTCATATCAAAAGGTTTAATCAAGAGGAAGAGTCTTGGCATGGCATTGAAAATTTCCGAGCACGAGTTCTTGGAGAAGTTTGTTATGCAGTATCTTTCAGAAGATCCCCATCTATTAGAGATGTACCAGGAGAAGAAGAAGATTGCGATATAACGAAAACTTTCTGCTTCACTTCAAGCAATTTGTCTATTCTGCTACTAACTCTGCACTTCATATTATGAGGTAAACTCGTAGGTTTGTGTGCAATGGTTGTGAAATTTCTCACATCTTAGAACTTTGTATTTTGATCTCTTAGGAATGTACCAACTTGCATGAGACTGCGCCAAGAGAAGTAACTAATTCTGATGCTTAATTTT

Coding sequence (CDS)

ATGGCTCCTAATATCGAAGTATTGAGAGCTAATGGGGTGCCCGATTCGAGCATTGCTAAACTGTTTTGGAAGCGCCCAGTTGCACTGTCCAGGGATGTGAAATGGTTTACTGACATTGTCGAGAAGACGAAGGAAAGGGGGTTCAATCCTTCGAGTTTGATGTTTATTAATGGGCTGTGTATAGTTTCATCGATGAGCAAGGACAGATGGTTATCGAAACTGCATATTTTTAGAAGTTATGGGTGGTCAGATGAGCAGTTTCAATCTATGTTTCTCAAGCAACCTTGTTTCATGAATAGGTCCGAGGAGGGTTTAAAAAGGGCATTGGATTTCTTTATGAACAAATGGGACTGGACACGGGAAGAAATTTACAGATACCCAATTGTGCTCATTCTTAGTTTTGAAAAGAGGGTGATGCCTAGGTCGTCTATCCTTCAGCACCTCATATCAAAAGGTTTAATCAAGAGGAAGAGTCTTGGCATGGCATTGAAAATTTCCGAGCACGAGTTCTTGGAGAAGTTTGTTATGCAGTATCTTTCAGAAGATCCCCATCTATTAGAGATGTACCAGGAGAAGAAGAAGATTGCGATATAA

Protein sequence

MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLCIVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTREEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLSEDPHLLEMYQEKKKIAI

Homology

[Close]

BLAST of Cucsat.G5104.T3 vs. NCBI nr
Match: XP_004138819.1 (uncharacterized protein LOC101219073 [Cucumis sativus] >KGN63092.1 hypothetical protein Csa_022198 [Cucumis sativus])

HSP 1 Score: 402 bits (1033), Expect = 1.20e-138
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC
Sbjct: 186 MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
           IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR
Sbjct: 246 IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS
Sbjct: 306 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 365

Query: 181 EDPHLLEMYQEKKKIAI 197
           EDPHLLEMYQEKKKIAI
Sbjct: 366 EDPHLLEMYQEKKKIAI 382

[Close]

BLAST of Cucsat.G5104.T3 vs. NCBI nr
Match: XP_004143080.2 (uncharacterized protein LOC101214641 [Cucumis sativus] >KGN62260.1 hypothetical protein Csa_018661 [Cucumis sativus])

HSP 1 Score: 318 bits (816), Expect = 2.04e-105
Identity = 153/197 (77.66%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           +APNIEVLRANGV DS+IAKL W RP+ALSRDV+WFTDIVEKT+ERGFNPSSLMFI+GLC
Sbjct: 186 VAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMFIHGLC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
            +SSMSKD+WLSKLH+FRS+GWSDEQFQSMFLK+P  MN SEE LKRALDFF+ KWDWT 
Sbjct: 246 TLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIKWDWTW 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           E+I +Y ++L  S EKR++PRSSILQHLISKG IKRKS+G AL   EH+FLEKFVM+YLS
Sbjct: 306 EDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFVMKYLS 365

Query: 181 EDPHLLEMYQEKKKIAI 197
           EDP+LLEMYQEKKK+A+
Sbjct: 366 EDPNLLEMYQEKKKMAL 382

[Close]

BLAST of Cucsat.G5104.T3 vs. NCBI nr
Match: XP_008444984.1 (PREDICTED: transcription termination factor MTERF8, chloroplastic-like [Cucumis melo] >KAA0054069.1 transcription termination factor MTERF8 [Cucumis melo var. makuwa] >TYJ96854.1 transcription termination factor MTERF8 [Cucumis melo var. makuwa])

HSP 1 Score: 313 bits (802), Expect = 1.43e-103
Identity = 152/197 (77.16%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           MAPNIEVLRANGV DS+IAK+   RP+ALSRDV+ F DIVEK KE G NPSSLMFI+GLC
Sbjct: 186 MAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLMFIHGLC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
           ++SSMSKD+WLSK+H+F+S+GWSDEQFQSMFLKQP FM RSEE LKR LDFFMNKWDWTR
Sbjct: 246 MISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNKWDWTR 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           E+I +Y ++L LS EKRV+PRSSI++HLISKG IKRKS G+AL+  EHEFLEKFVM+YLS
Sbjct: 306 EDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRPEHEFLEKFVMKYLS 365

Query: 181 EDPHLLEMYQEKKKIAI 197
           +DPHLLEMYQEKKK+AI
Sbjct: 366 KDPHLLEMYQEKKKMAI 382

[Close]

BLAST of Cucsat.G5104.T3 vs. NCBI nr
Match: XP_008445328.1 (PREDICTED: transcription termination factor MTERF5, chloroplastic-like [Cucumis melo] >KAA0064842.1 transcription termination factor MTERF5 [Cucumis melo var. makuwa])

HSP 1 Score: 305 bits (782), Expect = 1.64e-100
Identity = 148/198 (74.75%), Postives = 174/198 (87.88%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           MAPN+EVLRANGVPDS+IAK+   RP+ALS+DV+ F DIVEKTKE G NPSSLMFI+G+C
Sbjct: 186 MAPNVEVLRANGVPDSNIAKMLSLRPIALSKDVEHFIDIVEKTKEMGLNPSSLMFIHGMC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
           +++SMSKD+WLSK+H+F+S+GWSDEQFQSMFLKQP FM RSEE LKR LDFFMNKWDWT 
Sbjct: 246 MIASMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNKWDWTL 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           E++ +YP++L LS EKRV+PRSSI+Q LISKG IKRKS G AL+  E  FLEKFVM+YLS
Sbjct: 306 EDVSKYPVLLNLSLEKRVIPRSSIVQRLISKGFIKRKSFGKALQRPEQWFLEKFVMKYLS 365

Query: 181 EDPHLLEMYQE-KKKIAI 197
           EDPHLLEMYQE KKK+AI
Sbjct: 366 EDPHLLEMYQETKKKMAI 383

[Close]

BLAST of Cucsat.G5104.T3 vs. NCBI nr
Match: XP_022951074.1 (uncharacterized protein LOC111454032 [Cucurbita moschata] >XP_022951075.1 uncharacterized protein LOC111454032 [Cucurbita moschata] >XP_022951076.1 uncharacterized protein LOC111454032 [Cucurbita moschata])

HSP 1 Score: 299 bits (765), Expect = 5.43e-98
Identity = 146/195 (74.87%), Postives = 163/195 (83.59%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           +APNIE+LRANGVPDS IAK+FW RP  L+RD + F+DIVEKTKE GFNPSS MFI GLC
Sbjct: 185 VAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFIYGLC 244

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
             S M KD+WLSKLHIF S+GWS EQFQS+FLKQP FMN SEE +KRALDFFMNK DWT 
Sbjct: 245 TFSGMKKDKWLSKLHIFTSFGWSKEQFQSLFLKQPTFMNSSEEKIKRALDFFMNKLDWTH 304

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           EEI RYPIVL LSFEKRV+PRSSILQHL+SKG IK+ S G A  +SE +FL KFVMQYLS
Sbjct: 305 EEISRYPIVLYLSFEKRVVPRSSILQHLMSKGFIKKTSFGRAFMLSEDKFLVKFVMQYLS 364

Query: 181 EDPHLLEMYQEKKKI 195
           EDPHLLEMYQ+K  +
Sbjct: 365 EDPHLLEMYQKKMAV 379

[Close]

BLAST of Cucsat.G5104.T3 vs. ExPASy TrEMBL
Match: A0A0A0LQN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402010 PE=3 SV=1)

HSP 1 Score: 402 bits (1033), Expect = 5.80e-139
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC
Sbjct: 186 MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
           IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR
Sbjct: 246 IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS
Sbjct: 306 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 365

Query: 181 EDPHLLEMYQEKKKIAI 197
           EDPHLLEMYQEKKKIAI
Sbjct: 366 EDPHLLEMYQEKKKIAI 382

[Close]

BLAST of Cucsat.G5104.T3 vs. ExPASy TrEMBL
Match: A0A0A0LK19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346010 PE=3 SV=1)

HSP 1 Score: 318 bits (816), Expect = 9.85e-106
Identity = 153/197 (77.66%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           +APNIEVLRANGV DS+IAKL W RP+ALSRDV+WFTDIVEKT+ERGFNPSSLMFI+GLC
Sbjct: 186 VAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMFIHGLC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
            +SSMSKD+WLSKLH+FRS+GWSDEQFQSMFLK+P  MN SEE LKRALDFF+ KWDWT 
Sbjct: 246 TLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIKWDWTW 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           E+I +Y ++L  S EKR++PRSSILQHLISKG IKRKS+G AL   EH+FLEKFVM+YLS
Sbjct: 306 EDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFVMKYLS 365

Query: 181 EDPHLLEMYQEKKKIAI 197
           EDP+LLEMYQEKKK+A+
Sbjct: 366 EDPNLLEMYQEKKKMAL 382

[Close]

BLAST of Cucsat.G5104.T3 vs. ExPASy TrEMBL
Match: A0A5A7UKN0 (Transcription termination factor MTERF8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00090 PE=3 SV=1)

HSP 1 Score: 313 bits (802), Expect = 6.92e-104
Identity = 152/197 (77.16%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           MAPNIEVLRANGV DS+IAK+   RP+ALSRDV+ F DIVEK KE G NPSSLMFI+GLC
Sbjct: 186 MAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLMFIHGLC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
           ++SSMSKD+WLSK+H+F+S+GWSDEQFQSMFLKQP FM RSEE LKR LDFFMNKWDWTR
Sbjct: 246 MISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNKWDWTR 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           E+I +Y ++L LS EKRV+PRSSI++HLISKG IKRKS G+AL+  EHEFLEKFVM+YLS
Sbjct: 306 EDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRPEHEFLEKFVMKYLS 365

Query: 181 EDPHLLEMYQEKKKIAI 197
           +DPHLLEMYQEKKK+AI
Sbjct: 366 KDPHLLEMYQEKKKMAI 382

[Close]

BLAST of Cucsat.G5104.T3 vs. ExPASy TrEMBL
Match: A0A1S3BCI2 (transcription termination factor MTERF8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488160 PE=3 SV=1)

HSP 1 Score: 313 bits (802), Expect = 6.92e-104
Identity = 152/197 (77.16%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           MAPNIEVLRANGV DS+IAK+   RP+ALSRDV+ F DIVEK KE G NPSSLMFI+GLC
Sbjct: 186 MAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLMFIHGLC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
           ++SSMSKD+WLSK+H+F+S+GWSDEQFQSMFLKQP FM RSEE LKR LDFFMNKWDWTR
Sbjct: 246 MISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNKWDWTR 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           E+I +Y ++L LS EKRV+PRSSI++HLISKG IKRKS G+AL+  EHEFLEKFVM+YLS
Sbjct: 306 EDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRPEHEFLEKFVMKYLS 365

Query: 181 EDPHLLEMYQEKKKIAI 197
           +DPHLLEMYQEKKK+AI
Sbjct: 366 KDPHLLEMYQEKKKMAI 382

[Close]

BLAST of Cucsat.G5104.T3 vs. ExPASy TrEMBL
Match: A0A5A7V906 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001540 PE=3 SV=1)

HSP 1 Score: 305 bits (782), Expect = 7.92e-101
Identity = 148/198 (74.75%), Postives = 174/198 (87.88%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           MAPN+EVLRANGVPDS+IAK+   RP+ALS+DV+ F DIVEKTKE G NPSSLMFI+G+C
Sbjct: 186 MAPNVEVLRANGVPDSNIAKMLSLRPIALSKDVEHFIDIVEKTKEMGLNPSSLMFIHGMC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
           +++SMSKD+WLSK+H+F+S+GWSDEQFQSMFLKQP FM RSEE LKR LDFFMNKWDWT 
Sbjct: 246 MIASMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNKWDWTL 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           E++ +YP++L LS EKRV+PRSSI+Q LISKG IKRKS G AL+  E  FLEKFVM+YLS
Sbjct: 306 EDVSKYPVLLNLSLEKRVIPRSSIVQRLISKGFIKRKSFGKALQRPEQWFLEKFVMKYLS 365

Query: 181 EDPHLLEMYQE-KKKIAI 197
           EDPHLLEMYQE KKK+AI
Sbjct: 366 EDPHLLEMYQETKKKMAI 383

[Close]

BLAST of Cucsat.G5104.T3 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 112.8 bits (281), Expect = 3.0e-25
Identity = 63/191 (32.98%), Postives = 100/191 (52.36%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           + PNI  +   GVP+  I  L    P A+ +    F  I ++ +E GFNP    F+  + 
Sbjct: 209 LVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTFVLAIH 268

Query: 61  IVSSM-SKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWT 120
            +S   +K  W     +++ +GWS++     F K P  M  SE  + R +++F+N+ +  
Sbjct: 269 ALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMA 328

Query: 121 REEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRK-SLGMALKISEHEFLEKFVMQY 180
              I + P+VL  S EKR++PR S+ + L+S GL+K   SL   L   E  FLEK V++Y
Sbjct: 329 PRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKY 388

Query: 181 LSEDPHLLEMY 190
             E P L+ +Y
Sbjct: 389 EEELPELMNLY 399

[Close]

BLAST of Cucsat.G5104.T3 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 108.2 bits (269), Expect = 7.5e-24
Identity = 55/191 (28.80%), Postives = 99/191 (51.83%), Query Frame = 0


Query: 5   IEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLCIVSS 64
           + + R  GVPD SI  L    P       + F +++ +    GF+P    F++ +     
Sbjct: 200 VSICRELGVPDKSIKWLVQASPFTFFSRERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDC 259

Query: 65  MSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTREEIY 124
            S+     K  +F+ +GWS E F +  ++ P  +  S+E +   L++ +N       +I 
Sbjct: 260 TSESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVTVSDEKIMYTLEYLVNNIGLQARDIV 319

Query: 125 RYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLG--MALKISEHEFLEKFVMQYLSED 184
             P+VL LS EKR+ PR+ ++  L+SKGL+K++ +     LK+   EF++KFV++Y  E 
Sbjct: 320 ARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDINYFTILKLKSSEFMDKFVLKYQDEM 379

Query: 185 PHLLEMYQEKK 194
           P L++ +   +
Sbjct: 380 PQLVQPFTSNR 390

[Close]

BLAST of Cucsat.G5104.T3 vs. TAIR 10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-19
Identity = 52/186 (27.96%), Postives = 101/186 (54.30%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           + PNI  L   G+  S +A L  ++P   +   +     V +  + GF  +S M ++ + 
Sbjct: 181 LLPNISYLETCGIVGSQLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVI 240

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
            +SS+S+  +  K+ +F + G+S+++   +  + P  +  SE+ L    +F++ +    R
Sbjct: 241 SLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLER 300

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLI-----KRKSLGMALKISEHEFLEKFV 180
           E + + P VL  + EKRV+PR  +LQ L  KGL+     K+K++   ++++E  FLEK+V
Sbjct: 301 EALAKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYV 360

Query: 181 MQYLSE 182
           +++  E
Sbjct: 361 VRFGDE 366

[Close]

BLAST of Cucsat.G5104.T3 vs. TAIR 10
Match: AT3G46950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 78.2 bits (191), Expect = 8.3e-15
Identity = 52/190 (27.37%), Postives = 95/190 (50.00%), Query Frame = 0


Query: 5   IEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFI---NGLCI 64
           + V +  G  ++ I  +F K P  L    K    + E  K+ G     ++ +      CI
Sbjct: 257 VNVYKRLGFSEAEIWAIFKKWPYFLKFSEKKIILMFETLKKCGLVEEEIISVLKSRPQCI 316

Query: 65  VSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTRE 124
            S  S+ + L  + +F   G+S + F+ M  + PC    S E L++  +  +   +W  E
Sbjct: 317 RS--SEQKILDSIEMFLGLGFSRDDFKMMVKRYPCCTAYSGETLRKKFEVLVKMMNWPLE 376

Query: 125 EIYRYPIVLILSFEKRVMPRSSILQHLISKGLI--KRKSLGMALKISEHEFLEKFVMQYL 184
            +   P VL  S EKR++PRS++++ L+SKGLI  +   +   L  ++ EFL+++VM++ 
Sbjct: 377 AVVMIPTVLGYSLEKRIVPRSNVIKALMSKGLIGSENPPISSVLVCTDQEFLKRYVMKHD 436

Query: 185 SEDPHLLEMY 190
              P L+ ++
Sbjct: 437 KLVPKLMAIF 444

[Close]

BLAST of Cucsat.G5104.T3 vs. TAIR 10
Match: AT1G61980.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 61/224 (27.23%), Postives = 103/224 (45.98%), Query Frame = 0


Query: 4   NIEVLRANGVPDSSIAKLFWKRPVALSRDV-----KWFTDIVEKTKERGFNPSSLMFING 63
           N+ VLR  G+P     KL +  P+ +S DV     + F + ++K  E GF+PS+  F+  
Sbjct: 192 NLSVLRELGMPH----KLLF--PLLISCDVPVFGKEKFEESLKKVVEMGFDPSTSKFVEA 251

Query: 64  LCIVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSE---------------- 123
           LC+V  +S      K++ ++  G+  E   ++F + P F+  SE                
Sbjct: 252 LCVVQRLSDKNIEDKVNAYKRLGFDVEYVWTVFKRWPNFLTHSEKKILNTIETFLGLGFS 311

Query: 124 -------------------EGLKRALDFFMNKWDWTREEIYRYPIVLILSFEKRVMPRSS 183
                              E +K+  +F + K +W  + +   P VL  S EKR +PR +
Sbjct: 312 RDEFSVLIKRFPQGIGLSAEMVKKKTEFLVKKMNWPLKALVSNPAVLGYSLEKRTVPRGN 371

Query: 184 ILQHLISKGLI--KRKSLGMALKISEHEFLEKFVMQYLSEDPHL 186
           ++Q LISKGLI  +  S+      ++  FL ++V ++  ED  L
Sbjct: 372 VVQALISKGLIGSELPSISRVFVCTDQVFLNRYVKRH--EDKQL 407

The following BLAST results are available for this feature:

BLAST of Cucsat.G5104.T3 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G5104.T3 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138819.1	1.20e-138	100.00	uncharacterized protein LOC101219073 [Cucumis sativus] >KGN63092.1 hypothetical ...	[more]
XP_004143080.2	2.04e-105	77.66	uncharacterized protein LOC101214641 [Cucumis sativus] >KGN62260.1 hypothetical ...	[more]
XP_008444984.1	1.43e-103	77.16	PREDICTED: transcription termination factor MTERF8, chloroplastic-like [Cucumis ...	[more]
XP_008445328.1	1.64e-100	74.75	PREDICTED: transcription termination factor MTERF5, chloroplastic-like [Cucumis ...	[more]
XP_022951074.1	5.43e-98	74.87	uncharacterized protein LOC111454032 [Cucurbita moschata] >XP_022951075.1 unchar...	[more]

BLAST of Cucsat.G5104.T3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQN0	5.80e-139	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402010 PE=3 SV=1	[more]
A0A0A0LK19	9.85e-106	77.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346010 PE=3 SV=1	[more]
A0A5A7UKN0	6.92e-104	77.16	Transcription termination factor MTERF8 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BCI2	6.92e-104	77.16	transcription termination factor MTERF8, chloroplastic-like OS=Cucumis melo OX=3...	[more]
A0A5A7V906	7.92e-101	74.75	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Cucsat.G5104.T3 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	3.0e-25	32.98	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	7.5e-24	28.80	Mitochondrial transcription termination factor family protein	[more]
AT5G64950.1	3.3e-19	27.96	Mitochondrial transcription termination factor family protein	[more]
AT3G46950.1	8.3e-15	27.37	Mitochondrial transcription termination factor family protein	[more]
AT1G61980.1	1.1e-14	27.23	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 88..119 e-value: 100.0 score: 11.6 coord: 19..49 e-value: 970.0 score: 4.0 coord: 120..154 e-value: 130.0 score: 10.7
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 4..171 e-value: 1.7E-21 score: 76.5
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 1..195
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 1..185 e-value: 8.7E-35 score: 122.1
None	No IPR available	PANTHER	PTHR13068:SF187	SUBFAMILY NOT NAMED	coord: 1..195

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G5104	Cucsat.G5104	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G5104.T3.E1	Cucsat.G5104.T3.E1	exon
Cucsat.G5104.T3.E2	Cucsat.G5104.T3.E2	exon
Cucsat.G5104.T3.E3	Cucsat.G5104.T3.E3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G5104.T3.C1	Cucsat.G5104.T3.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G5104.T3	Cucsat.G5104.T3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0032502	developmental process
biological_process	GO:0006353	DNA-templated transcription, termination
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003690	double-stranded DNA binding