Cucsat.G5104 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G5104
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Transcription termination factor MTERF8
Location	ctg1227: 3815770 .. 3817182 (-)
RNA-Seq Expression	Cucsat.G5104
Synteny	Cucsat.G5104

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTCAAAAGTTTATGATTATATATATAGTTTAACCTTTTAAGGCTAACACAATTGTGAAAAGTAGCAGTGGGCAGTGCATACCAGGCCATCACCCTCGCAAACCTCTTCTTTCACTTTCCAATGGCCAATTTTCTCCGCAAACCTTCTCTACTACGTCTCTATGCTCAAGACCTCCGGAATTTCGCACACAACAAAACCACTATTGGCCTCAATTTCCTTTCTTCTCTCTCTCAATCCCCTCAATCCCCTCAATCAACCAACCATCAGACACTCGATTACCTAATCCACACCATCGGCCTCTCCAAGGATTCAGCTCTCGCCGCTGCCAAGAAAATCCATCTCAAACCATCCTCGGATCCCGACTCTGTTCTTGCTCTCTTTAACGCCTATGGATTCACGCCCTCCCAGACCGCCAACATCTTTTGCAGACAACCCAGACTCCTTCTTGCTGATCCGGACAAAACACTCAAGCCCAAGTTCGAGTTTCTCTCCAAAAACGGCATATCTGGTAACTTTCTCGTCGACTTAATCTGTAGGGAGCCACATATTCTTCGAAGGAGCCTGGACAAGAAGATTGTTCCATGTTTTGATTTTCTAATAAATTTCTTTGGGTCTACTGATTGTATTGTTTCGTTATTTTGTACTACACATAGGACTCGTGTTTTGCACACGTTTTCTGAATTTATGGCTCCTAATATCGAAGTATTGAGAGCTAATGGGGTGCCCGATTCGAGCATTGCTAAACTGTTTTGGAAGCGCCCAGTTGCACTGTCCAGGGATGTGAAATGGTTTACTGACATTGTCGAGAAGACGAAGGAAAGGGGGTTCAATCCTTCGAGTTTGATGTTTATTAATGGGCTGTGTATAGTTTCATCGATGAGCAAGGACAGATGGTTATCGAAACTGCATATTTTTAGAAGTTATGGGTGGTCAGATGAGCAGTTTCAATCTATGTTTCTCAAGCAACCTTGTTTCATGAATAGGTCCGAGGAGGGTTTAAAAAGGGCATTGGATTTCTTTATGAACAAATGGGACTGGACACGGGAAGAAATTTACAGATACCCAATTGTGCTCATTCTTAGTTTTGAAAAGAGGGTGATGCCTAGGTCGTCTATCCTTCAGCACCTCATATCAAAAGGTTTAATCAAGAGGAAGAGTCTTGGCATGGCATTGAAAATTTCCGAGCACGAGTTCTTGGAGAAGTTTGTTATGCAGTATCTTTCAGAAGATCCCCATCTATTAGAGATGTACCAGGAGAAGAAGAAGATTGCGATATAACGAAAACTTTCTGCTTCACTTCAAGCAATTTGTCTATTCTGCTACTAACTCTGCACTTCATATTATGAGGTAAACTCGTAGGTTTGTGTGCAATGGTTGTGAAATTTCTCACATCTTAGAACTTTGTATTTTGATCTCTTAGGAATGTACCAACTTGCATGAGACTGCGCCAAGAGAAGTAACTAATTCTGATGCTTAATTTTAAAGATTGATTGGTATTCTCATTGATGATTGTGGAGTTCATCTTCCATTTACCATTTAGAGAGAACGGTTGTTGCCTTTTGTTCGCGGGGTGTGTGCTCTTAGTGTTGTTTTGAAGTAGTTTGTATCTCTTCGTTTCTTTGCTTTCTTTTTCTTTCTGTTTTTCTCTCTTCCAATACCTTTTTGAAGATTGTATGTATTCTTGACCTTTTTTCTGCATAATGATTTAAATGAGATTTTTTACATAAAGTAAAACTTCTTAGC

Coding sequence (CDS)

ATGGCCAATTTTCTCCGCAAACCTTCTCTACTACGTCTCTATGCTCAAGACCTCCGGAATTTCGCACACAACAAAACCACTATTGGCCTCAATTTCCTTTCTTCTCTCTCTCAATCCCCTCAATCCCCTCAATCAACCAACCATCAGACACTCGATTACCTAATCCACACCATCGGCCTCTCCAAGGATTCAGCTCTCGCCGCTGCCAAGAAAATCCATCTCAAACCATCCTCGGATCCCGACTCTGTTCTTGCTCTCTTTAACGCCTATGGATTCACGCCCTCCCAGACCGCCAACATCTTTTGCAGACAACCCAGACTCCTTCTTGCTGATCCGGACAAAACACTCAAGCCCAAGTTCGAGTTTCTCTCCAAAAACGGCATATCTGGTAACTTTCTCGTCGACTTAATCTGTAGGGAGCCACATATTCTTCGAAGGAGCCTGGACAAGAAGATTGTTCCATGTTTTGATTTTCTAATAAATTTCTTTGGGTCTACTGATTGTATTGTTTCGTTATTTTGTACTACACATAGGACTCGTGTTTTGCACACGTTTTCTGAATTTATGGCTCCTAATATCGAAGTATTGAGAGCTAATGGGGTGCCCGATTCGAGCATTGCTAAACTGTTTTGGAAGCGCCCAGTTGCACTGTCCAGGGATGTGAAATGGTTTACTGACATTGTCGAGAAGACGAAGGAAAGGGGGTTCAATCCTTCGAGTTTGATGTTTATTAATGGGCTGTGTATAGTTTCATCGATGAGCAAGGACAGATGGTTATCGAAACTGCATATTTTTAGAAGTTATGGGTGGTCAGATGAGCAGTTTCAATCTATGTTTCTCAAGCAACCTTGTTTCATGAATAGGTCCGAGGAGGGTTTAAAAAGGGCATTGGATTTCTTTATGAACAAATGGGACTGGACACGGGAAGAAATTTACAGATACCCAATTGTGCTCATTCTTAGTTTTGAAAAGAGGGTGATGCCTAGGTCGTCTATCCTTCAGCACCTCATATCAAAAGGTTTAATCAAGAGGAAGAGTCTTGGCATGGCATTGAAAATTTCCGAGCACGAGTTCTTGGAGAAGTTTGTTATGCAGTATCTTTCAGAAGATCCCCATCTATTAGAGATGTACCAGGAGAAGAAGAAGATTGCGATATAA

Protein sequence

MANFLRKPSLLRLYAQDLRNFAHNKTTIGLNFLSSLSQSPQSPQSTNHQTLDYLIHTIGLSKDSALAAAKKIHLKPSSDPDSVLALFNAYGFTPSQTANIFCRQPRLLLADPDKTLKPKFEFLSKNGISGNFLVDLICREPHILRRSLDKKIVPCFDFLINFFGSTDCIVSLFCTTHRTRVLHTFSEFMAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLCIVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTREEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLSEDPHLLEMYQEKKKIAI

Homology

[Close]

BLAST of Cucsat.G5104 vs. NCBI nr
Match: XP_004138819.1 (uncharacterized protein LOC101219073 [Cucumis sativus] >KGN63092.1 hypothetical protein Csa_022198 [Cucumis sativus])

HSP 1 Score: 402 bits (1033), Expect = 1.20e-138
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC
Sbjct: 186 MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
           IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR
Sbjct: 246 IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS
Sbjct: 306 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 365

Query: 181 EDPHLLEMYQEKKKIAI 197
           EDPHLLEMYQEKKKIAI
Sbjct: 366 EDPHLLEMYQEKKKIAI 382

[Close]

BLAST of Cucsat.G5104 vs. NCBI nr
Match: XP_004143080.2 (uncharacterized protein LOC101214641 [Cucumis sativus] >KGN62260.1 hypothetical protein Csa_018661 [Cucumis sativus])

HSP 1 Score: 318 bits (816), Expect = 2.04e-105
Identity = 153/197 (77.66%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           +APNIEVLRANGV DS+IAKL W RP+ALSRDV+WFTDIVEKT+ERGFNPSSLMFI+GLC
Sbjct: 186 VAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMFIHGLC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
            +SSMSKD+WLSKLH+FRS+GWSDEQFQSMFLK+P  MN SEE LKRALDFF+ KWDWT 
Sbjct: 246 TLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIKWDWTW 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           E+I +Y ++L  S EKR++PRSSILQHLISKG IKRKS+G AL   EH+FLEKFVM+YLS
Sbjct: 306 EDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFVMKYLS 365

Query: 181 EDPHLLEMYQEKKKIAI 197
           EDP+LLEMYQEKKK+A+
Sbjct: 366 EDPNLLEMYQEKKKMAL 382

[Close]

BLAST of Cucsat.G5104 vs. NCBI nr
Match: XP_008444984.1 (PREDICTED: transcription termination factor MTERF8, chloroplastic-like [Cucumis melo] >KAA0054069.1 transcription termination factor MTERF8 [Cucumis melo var. makuwa] >TYJ96854.1 transcription termination factor MTERF8 [Cucumis melo var. makuwa])

HSP 1 Score: 313 bits (802), Expect = 1.43e-103
Identity = 152/197 (77.16%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           MAPNIEVLRANGV DS+IAK+   RP+ALSRDV+ F DIVEK KE G NPSSLMFI+GLC
Sbjct: 186 MAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLMFIHGLC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
           ++SSMSKD+WLSK+H+F+S+GWSDEQFQSMFLKQP FM RSEE LKR LDFFMNKWDWTR
Sbjct: 246 MISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNKWDWTR 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           E+I +Y ++L LS EKRV+PRSSI++HLISKG IKRKS G+AL+  EHEFLEKFVM+YLS
Sbjct: 306 EDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRPEHEFLEKFVMKYLS 365

Query: 181 EDPHLLEMYQEKKKIAI 197
           +DPHLLEMYQEKKK+AI
Sbjct: 366 KDPHLLEMYQEKKKMAI 382

[Close]

BLAST of Cucsat.G5104 vs. NCBI nr
Match: XP_008445328.1 (PREDICTED: transcription termination factor MTERF5, chloroplastic-like [Cucumis melo] >KAA0064842.1 transcription termination factor MTERF5 [Cucumis melo var. makuwa])

HSP 1 Score: 305 bits (782), Expect = 1.64e-100
Identity = 148/198 (74.75%), Postives = 174/198 (87.88%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           MAPN+EVLRANGVPDS+IAK+   RP+ALS+DV+ F DIVEKTKE G NPSSLMFI+G+C
Sbjct: 186 MAPNVEVLRANGVPDSNIAKMLSLRPIALSKDVEHFIDIVEKTKEMGLNPSSLMFIHGMC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
           +++SMSKD+WLSK+H+F+S+GWSDEQFQSMFLKQP FM RSEE LKR LDFFMNKWDWT 
Sbjct: 246 MIASMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNKWDWTL 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           E++ +YP++L LS EKRV+PRSSI+Q LISKG IKRKS G AL+  E  FLEKFVM+YLS
Sbjct: 306 EDVSKYPVLLNLSLEKRVIPRSSIVQRLISKGFIKRKSFGKALQRPEQWFLEKFVMKYLS 365

Query: 181 EDPHLLEMYQE-KKKIAI 197
           EDPHLLEMYQE KKK+AI
Sbjct: 366 EDPHLLEMYQETKKKMAI 383

[Close]

BLAST of Cucsat.G5104 vs. NCBI nr
Match: XP_022951074.1 (uncharacterized protein LOC111454032 [Cucurbita moschata] >XP_022951075.1 uncharacterized protein LOC111454032 [Cucurbita moschata] >XP_022951076.1 uncharacterized protein LOC111454032 [Cucurbita moschata])

HSP 1 Score: 299 bits (765), Expect = 5.43e-98
Identity = 146/195 (74.87%), Postives = 163/195 (83.59%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           +APNIE+LRANGVPDS IAK+FW RP  L+RD + F+DIVEKTKE GFNPSS MFI GLC
Sbjct: 185 VAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFIYGLC 244

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
             S M KD+WLSKLHIF S+GWS EQFQS+FLKQP FMN SEE +KRALDFFMNK DWT 
Sbjct: 245 TFSGMKKDKWLSKLHIFTSFGWSKEQFQSLFLKQPTFMNSSEEKIKRALDFFMNKLDWTH 304

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           EEI RYPIVL LSFEKRV+PRSSILQHL+SKG IK+ S G A  +SE +FL KFVMQYLS
Sbjct: 305 EEISRYPIVLYLSFEKRVVPRSSILQHLMSKGFIKKTSFGRAFMLSEDKFLVKFVMQYLS 364

Query: 181 EDPHLLEMYQEKKKI 195
           EDPHLLEMYQ+K  +
Sbjct: 365 EDPHLLEMYQKKMAV 379

[Close]

BLAST of Cucsat.G5104 vs. ExPASy TrEMBL
Match: A0A0A0LQN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402010 PE=3 SV=1)

HSP 1 Score: 402 bits (1033), Expect = 5.80e-139
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC
Sbjct: 186 MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
           IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR
Sbjct: 246 IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS
Sbjct: 306 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 365

Query: 181 EDPHLLEMYQEKKKIAI 197
           EDPHLLEMYQEKKKIAI
Sbjct: 366 EDPHLLEMYQEKKKIAI 382

[Close]

BLAST of Cucsat.G5104 vs. ExPASy TrEMBL
Match: A0A0A0LK19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346010 PE=3 SV=1)

HSP 1 Score: 318 bits (816), Expect = 9.85e-106
Identity = 153/197 (77.66%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           +APNIEVLRANGV DS+IAKL W RP+ALSRDV+WFTDIVEKT+ERGFNPSSLMFI+GLC
Sbjct: 186 VAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMFIHGLC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
            +SSMSKD+WLSKLH+FRS+GWSDEQFQSMFLK+P  MN SEE LKRALDFF+ KWDWT 
Sbjct: 246 TLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIKWDWTW 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           E+I +Y ++L  S EKR++PRSSILQHLISKG IKRKS+G AL   EH+FLEKFVM+YLS
Sbjct: 306 EDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFVMKYLS 365

Query: 181 EDPHLLEMYQEKKKIAI 197
           EDP+LLEMYQEKKK+A+
Sbjct: 366 EDPNLLEMYQEKKKMAL 382

[Close]

BLAST of Cucsat.G5104 vs. ExPASy TrEMBL
Match: A0A5A7UKN0 (Transcription termination factor MTERF8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00090 PE=3 SV=1)

HSP 1 Score: 313 bits (802), Expect = 6.92e-104
Identity = 152/197 (77.16%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           MAPNIEVLRANGV DS+IAK+   RP+ALSRDV+ F DIVEK KE G NPSSLMFI+GLC
Sbjct: 186 MAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLMFIHGLC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
           ++SSMSKD+WLSK+H+F+S+GWSDEQFQSMFLKQP FM RSEE LKR LDFFMNKWDWTR
Sbjct: 246 MISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNKWDWTR 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           E+I +Y ++L LS EKRV+PRSSI++HLISKG IKRKS G+AL+  EHEFLEKFVM+YLS
Sbjct: 306 EDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRPEHEFLEKFVMKYLS 365

Query: 181 EDPHLLEMYQEKKKIAI 197
           +DPHLLEMYQEKKK+AI
Sbjct: 366 KDPHLLEMYQEKKKMAI 382

[Close]

BLAST of Cucsat.G5104 vs. ExPASy TrEMBL
Match: A0A1S3BCI2 (transcription termination factor MTERF8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488160 PE=3 SV=1)

HSP 1 Score: 313 bits (802), Expect = 6.92e-104
Identity = 152/197 (77.16%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           MAPNIEVLRANGV DS+IAK+   RP+ALSRDV+ F DIVEK KE G NPSSLMFI+GLC
Sbjct: 186 MAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLMFIHGLC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
           ++SSMSKD+WLSK+H+F+S+GWSDEQFQSMFLKQP FM RSEE LKR LDFFMNKWDWTR
Sbjct: 246 MISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNKWDWTR 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           E+I +Y ++L LS EKRV+PRSSI++HLISKG IKRKS G+AL+  EHEFLEKFVM+YLS
Sbjct: 306 EDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRPEHEFLEKFVMKYLS 365

Query: 181 EDPHLLEMYQEKKKIAI 197
           +DPHLLEMYQEKKK+AI
Sbjct: 366 KDPHLLEMYQEKKKMAI 382

[Close]

BLAST of Cucsat.G5104 vs. ExPASy TrEMBL
Match: A0A5A7V906 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001540 PE=3 SV=1)

HSP 1 Score: 305 bits (782), Expect = 7.92e-101
Identity = 148/198 (74.75%), Postives = 174/198 (87.88%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           MAPN+EVLRANGVPDS+IAK+   RP+ALS+DV+ F DIVEKTKE G NPSSLMFI+G+C
Sbjct: 186 MAPNVEVLRANGVPDSNIAKMLSLRPIALSKDVEHFIDIVEKTKEMGLNPSSLMFIHGMC 245

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
           +++SMSKD+WLSK+H+F+S+GWSDEQFQSMFLKQP FM RSEE LKR LDFFMNKWDWT 
Sbjct: 246 MIASMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNKWDWTL 305

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFVMQYLS 180
           E++ +YP++L LS EKRV+PRSSI+Q LISKG IKRKS G AL+  E  FLEKFVM+YLS
Sbjct: 306 EDVSKYPVLLNLSLEKRVIPRSSIVQRLISKGFIKRKSFGKALQRPEQWFLEKFVMKYLS 365

Query: 181 EDPHLLEMYQE-KKKIAI 197
           EDPHLLEMYQE KKK+AI
Sbjct: 366 EDPHLLEMYQETKKKMAI 383

[Close]

BLAST of Cucsat.G5104 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 112.8 bits (281), Expect = 3.0e-25
Identity = 63/191 (32.98%), Postives = 100/191 (52.36%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           + PNI  +   GVP+  I  L    P A+ +    F  I ++ +E GFNP    F+  + 
Sbjct: 209 LVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTFVLAIH 268

Query: 61  IVSSM-SKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWT 120
            +S   +K  W     +++ +GWS++     F K P  M  SE  + R +++F+N+ +  
Sbjct: 269 ALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMA 328

Query: 121 REEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRK-SLGMALKISEHEFLEKFVMQY 180
              I + P+VL  S EKR++PR S+ + L+S GL+K   SL   L   E  FLEK V++Y
Sbjct: 329 PRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKY 388

Query: 181 LSEDPHLLEMY 190
             E P L+ +Y
Sbjct: 389 EEELPELMNLY 399

[Close]

BLAST of Cucsat.G5104 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 108.2 bits (269), Expect = 7.5e-24
Identity = 55/191 (28.80%), Postives = 99/191 (51.83%), Query Frame = 0


Query: 5   IEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLCIVSS 64
           + + R  GVPD SI  L    P       + F +++ +    GF+P    F++ +     
Sbjct: 200 VSICRELGVPDKSIKWLVQASPFTFFSRERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDC 259

Query: 65  MSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTREEIY 124
            S+     K  +F+ +GWS E F +  ++ P  +  S+E +   L++ +N       +I 
Sbjct: 260 TSESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVTVSDEKIMYTLEYLVNNIGLQARDIV 319

Query: 125 RYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLG--MALKISEHEFLEKFVMQYLSED 184
             P+VL LS EKR+ PR+ ++  L+SKGL+K++ +     LK+   EF++KFV++Y  E 
Sbjct: 320 ARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDINYFTILKLKSSEFMDKFVLKYQDEM 379

Query: 185 PHLLEMYQEKK 194
           P L++ +   +
Sbjct: 380 PQLVQPFTSNR 390

[Close]

BLAST of Cucsat.G5104 vs. TAIR 10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-19
Identity = 52/186 (27.96%), Postives = 101/186 (54.30%), Query Frame = 0


Query: 1   MAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFINGLC 60
           + PNI  L   G+  S +A L  ++P   +   +     V +  + GF  +S M ++ + 
Sbjct: 181 LLPNISYLETCGIVGSQLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVI 240

Query: 61  IVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTR 120
            +SS+S+  +  K+ +F + G+S+++   +  + P  +  SE+ L    +F++ +    R
Sbjct: 241 SLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLER 300

Query: 121 EEIYRYPIVLILSFEKRVMPRSSILQHLISKGLI-----KRKSLGMALKISEHEFLEKFV 180
           E + + P VL  + EKRV+PR  +LQ L  KGL+     K+K++   ++++E  FLEK+V
Sbjct: 301 EALAKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYV 360

Query: 181 MQYLSE 182
           +++  E
Sbjct: 361 VRFGDE 366

[Close]

BLAST of Cucsat.G5104 vs. TAIR 10
Match: AT3G46950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 78.2 bits (191), Expect = 8.3e-15
Identity = 52/190 (27.37%), Postives = 95/190 (50.00%), Query Frame = 0


Query: 5   IEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMFI---NGLCI 64
           + V +  G  ++ I  +F K P  L    K    + E  K+ G     ++ +      CI
Sbjct: 257 VNVYKRLGFSEAEIWAIFKKWPYFLKFSEKKIILMFETLKKCGLVEEEIISVLKSRPQCI 316

Query: 65  VSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNKWDWTRE 124
            S  S+ + L  + +F   G+S + F+ M  + PC    S E L++  +  +   +W  E
Sbjct: 317 RS--SEQKILDSIEMFLGLGFSRDDFKMMVKRYPCCTAYSGETLRKKFEVLVKMMNWPLE 376

Query: 125 EIYRYPIVLILSFEKRVMPRSSILQHLISKGLI--KRKSLGMALKISEHEFLEKFVMQYL 184
            +   P VL  S EKR++PRS++++ L+SKGLI  +   +   L  ++ EFL+++VM++ 
Sbjct: 377 AVVMIPTVLGYSLEKRIVPRSNVIKALMSKGLIGSENPPISSVLVCTDQEFLKRYVMKHD 436

Query: 185 SEDPHLLEMY 190
              P L+ ++
Sbjct: 437 KLVPKLMAIF 444

[Close]

BLAST of Cucsat.G5104 vs. TAIR 10
Match: AT1G61980.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 61/224 (27.23%), Postives = 103/224 (45.98%), Query Frame = 0


Query: 4   NIEVLRANGVPDSSIAKLFWKRPVALSRDV-----KWFTDIVEKTKERGFNPSSLMFING 63
           N+ VLR  G+P     KL +  P+ +S DV     + F + ++K  E GF+PS+  F+  
Sbjct: 192 NLSVLRELGMPH----KLLF--PLLISCDVPVFGKEKFEESLKKVVEMGFDPSTSKFVEA 251

Query: 64  LCIVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSE---------------- 123
           LC+V  +S      K++ ++  G+  E   ++F + P F+  SE                
Sbjct: 252 LCVVQRLSDKNIEDKVNAYKRLGFDVEYVWTVFKRWPNFLTHSEKKILNTIETFLGLGFS 311

Query: 124 -------------------EGLKRALDFFMNKWDWTREEIYRYPIVLILSFEKRVMPRSS 183
                              E +K+  +F + K +W  + +   P VL  S EKR +PR +
Sbjct: 312 RDEFSVLIKRFPQGIGLSAEMVKKKTEFLVKKMNWPLKALVSNPAVLGYSLEKRTVPRGN 371

Query: 184 ILQHLISKGLI--KRKSLGMALKISEHEFLEKFVMQYLSEDPHL 186
           ++Q LISKGLI  +  S+      ++  FL ++V ++  ED  L
Sbjct: 372 VVQALISKGLIGSELPSISRVFVCTDQVFLNRYVKRH--EDKQL 407

The following BLAST results are available for this feature:

BLAST of Cucsat.G5104 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G5104 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138819.1	1.20e-138	100.00	uncharacterized protein LOC101219073 [Cucumis sativus] >KGN63092.1 hypothetical ...	[more]
XP_004143080.2	2.04e-105	77.66	uncharacterized protein LOC101214641 [Cucumis sativus] >KGN62260.1 hypothetical ...	[more]
XP_008444984.1	1.43e-103	77.16	PREDICTED: transcription termination factor MTERF8, chloroplastic-like [Cucumis ...	[more]
XP_008445328.1	1.64e-100	74.75	PREDICTED: transcription termination factor MTERF5, chloroplastic-like [Cucumis ...	[more]
XP_022951074.1	5.43e-98	74.87	uncharacterized protein LOC111454032 [Cucurbita moschata] >XP_022951075.1 unchar...	[more]

BLAST of Cucsat.G5104 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQN0	5.80e-139	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402010 PE=3 SV=1	[more]
A0A0A0LK19	9.85e-106	77.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346010 PE=3 SV=1	[more]
A0A5A7UKN0	6.92e-104	77.16	Transcription termination factor MTERF8 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BCI2	6.92e-104	77.16	transcription termination factor MTERF8, chloroplastic-like OS=Cucumis melo OX=3...	[more]
A0A5A7V906	7.92e-101	74.75	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Cucsat.G5104 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	3.0e-25	32.98	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	7.5e-24	28.80	Mitochondrial transcription termination factor family protein	[more]
AT5G64950.1	3.3e-19	27.96	Mitochondrial transcription termination factor family protein	[more]
AT3G46950.1	8.3e-15	27.37	Mitochondrial transcription termination factor family protein	[more]
AT1G61980.1	1.1e-14	27.23	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 88..119 e-value: 100.0 score: 11.6 coord: 19..49 e-value: 970.0 score: 4.0 coord: 120..154 e-value: 130.0 score: 10.7
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 4..171 e-value: 1.7E-21 score: 76.5
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 1..195
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 1..185 e-value: 8.7E-35 score: 122.1
None	No IPR available	PANTHER	PTHR13068:SF187	SUBFAMILY NOT NAMED	coord: 1..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G5104.T2	Cucsat.G5104.T2	mRNA
Cucsat.G5104.T1	Cucsat.G5104.T1	mRNA
Cucsat.G5104.T3	Cucsat.G5104.T3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0032502	developmental process
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003690	double-stranded DNA binding