Cucsat.G4856.T17 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G4856.T17
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionTraB domain-containing protein
Locationctg1227: 5187205 .. 5190944 (+)
RNA-Seq ExpressionCucsat.G4856.T17
SyntenyCucsat.G4856.T17
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGTGTATGAATCGATTAACTCGTTGTGCAACTCAGCTCAACTTGACCGAGTCACACCGGTTCATCGTAACAGCCACCGTCAAACCTCATCGCCGGCGTCTCAATTATGCCCTAACTTTCAAACCGCACCGGCATTTTTCAGCTCCATTCGATTTCGGGATTTTCTTCTCCCAAAACTCTGACCGTCCTCGGCGTCTACCCCGTTTGCCTCAGGTGATGGACCCGGTTCCTCCGGAATCTGATTCCCCTGCCGTTGAAGATTTTGTCCACATCGAGGACCCTAACATCGAGAGTTTGTGCGAGAGTATTGTTAGTACTACTGATGAACAGATCAACGACGAGGCAGCCTCTGTGATTTCCCCTGAGGCCGAGGAGGGTTTGGCGGAGCAGAGGAGAGTACTACCGGAGGAGCTTTCTAGAAGCGTGTTGGTATTGACTTGCGAGACCACTGGTGAAGGTGGCATTTGTGACGTATACCTAGTTGGAACGGCACACGTTTCTCAAGTAACTTCTTGATTTTCGATTGTGATAAATTGTCTTGTATTTGTGGCATTTGGTTCTTGAAATTTTGGAGGATATGGGGTGAAAAAGTATCGATTACAGTGAGAGTTCTTAACCCTTTCCGAATTTATTTGATTGAGGAATTCGAGTTAGAACTGAAGTAGATCACTTTTATGGATGCAGGAATCGTGCAGAGAAGTTCAAGCTGTAATCAGTTATTTGAAACCTCAGGCACTTCCTCTTTTTTGAATCTCGATTGTTTTAGATGGTTTGTTTTGCAGGCTATTTTCCTTCTTTCATGTGTTTACAATGTTGCTTGTGCGTTTGCTTATGTGAATGCAGGTCGTCTTCTTGGAGCTATGCGCAAGCCGAGTGGCAGTCCTCACCCCTCAGAATTTGAAGGTGGTGTTGTAATTTGTTTATAGAGATAATTTCAAATTCAAGCAAATAGCTTGTTGATTGAAGTTCACATTTTTTTTCTTTTTTTTTTCTTTTTAAGTTGCTTTGAACATGAAGTCTTGAACTATTACAAATTATGATTGCTGGTTAAAATCGATTACACAAATTCAGTGCCATACAGCATATGTGTCTCTTTTATCCCTCAATTTTTGCTCTCCCTGACCCTTAGTTCTTCAGGTTCCAACTATGGGAGAAATGGTTGAAATGTGGAAGAAAAAGCATAACATCTTTGGTATACTTTACAGTTGGTTTCTTGCGAAGGCAAGTTCTTTTTAGTTTTCTGTAGGTTTTATAGTGCATTTTTTGTTTTGTTTTTTTTGACAATTTTATTTGAAAGATTGCCTCTAATTTTACTTCCTTACTTTTATCTTAGGTAGCCAACAAACTCGAAGTATTCCCTGGTTCAGAGTTTCGTGTAGCCTATGAAGAAGCAATGAAGTATCGTGGTAAGGTAATTCTTGGTGATCGTCCAGTGCAGGTATGATCTCTTTCTCTCTCTCTCTTAAAGATTAAAACTTTTTCTTTTTTAAATAGAGCCTGTGATAGGATTTCTTGAACAAATATCTATTCTCATAACCTTTCTTACACAATTATATTTGCTTCAAAATCAATATGATTGTCTCAACTACCCTTCTTGAGAACTTATTCTGAAAAAGTGTCTGCTGTGGGATAAGTCTGTTCACCGGGTACGGTCGGCTGGTGTCAAGCCTCAAACGTACTTGAGAGCTTTTAATTGTTTTCCGATGTGATATTCACCTTAAAGGTGCTTTACATTCTGTTGGCCCTGACATCCACATGTGCATTCTATTGTGTGCTTTGATTGGTCCTGGATTAGTTTGAACGTATATTCATTTGCTACATGTGCCACTGCTCAATTTACATCACATCCTATTACTATTGTATTTTTCCTGTGTTAGTTTTTGAGCATACCTTTTGATTTGTATCCTTACCATTCTTTTTCTGTCTTTTGATCATGTTAATTTGCAACAAATAACCTTAATCCTCAATGAGGTGACATTTAGTTTGTCATTTTAATATAGCTGAACATACTGTAATATTTTGACGTTTACTCAACAGATTACAATTAGAAGAGCATGGGCGAAAATGCCCCTTTGGCATAAGATAAAATTGCTTTATTCCTTCGTTTTTCAAGCATTCTTTTTGCCAAGCCCCGAGGAATTAACCAAGATGGTATAATTTCATTAACTCTCTCTTTATCCTCACAGGAGAGGATTTTTCTCTATTTTTCTGTTTAATTGTGAGACAAATTGAAACGATTTGCTGTACTAATGCTATTTCTATCTTCAGTTGAAGGATATGGACGATGTTGACATGCTCACGCTCATAATTCAAGAAATGAGCAAGGAATTTCCCACATTAATGGACACTCTTGTGCACGAGCGAGATCGGTTAGTACATTTACCTTTGTGCTGTGTGAAGGCCATTGCGTTTTTCCTCTTTCAATGTGTTTTCTTTATTCAAATAGGAAGAAGTTTAGGAACTATTTGCAGTTGACTTTTTTTTTTATGACAAAATCTTTATTCTTTTCTTTCTGTGCAGTAAATACATGTTTGCATAACATTTTTTTTCTTTTTTAAAAAATAATAAATAAGTTTTCTTTTCTTTTTTTCCATTGGTTATTTTCCAATAGATTTAACAAGTTTTTTTTTCTCACTTTGACACCCAAATGTTGTCTTGTGAGATTAGTCGAAGTGTCCATAGGCTGATCCAAGATAATAATATTGTGTTTTCCTCCTGACGTATACTTCGTGGAATTATAAGATGATTCTTCAAAGGATTGGCAACACTTTGGAAAGTCCTAACTTCATAAATTAAAATCAGTTTTCTGCTCAACAATGTGTTCTGATTTCATGTTATATCCATCATTGTTGCACAATAGTTTTTTATCTTCCATTCGTGTTCTTGACTCACCCATATGTCTATAACTGTTTCAGGTACATGTCAACAACGTTACTAGGAGTAGCCAAGGAGCATCAATCGGTCGTTGCAGTTGTGGGGAAAGGTCATCTAAGTGGAATTAAGAAGAATTGGCAGCAGCCTGTTACTGTAGGTTTCACTCTCCCATTTCTTGAGAAATTTGATTGGTATTCCCTCTCTTCTCTTTACACAAGTATACATTTTCTTAAAATTGCAGCTCGAGGATCTTTTGGAAATGCCTCCCCAAAAAGGAGTCCCTGTCATCAAGATCTTTTCGTCAATAGGTGTTGCAGTTGCTGGAGTTGCCATCATATCAGGTGTTTACCTTGCATGCAAAAAATAACACTATTGAAACTCACCTCAAAGGCTAATCTGATGCAAAGAATGCTCGCTTGATCGTCAAATCTGAAGTTACTATTGGATTAGTTTGTACTTTTTAAACGAGTCCTCCTTGATTGAGGTTTGCCTTCACAGAATGAGTTAACCACAAATAATTTTTTCTCGTTATAGTTTCCTTCCCTTCTCTAGCTGTCTGGTCTAGCAAACTTGGAATCATCACAATGATGAGAAGTTTAACATTAGGCTAATAAAGTTAGAACGATTGAAAGTACTATAGCTACATTTCTTGAAACATTAATATATAATTGTTCAAAACAGAAAAAAGATATTTTTGTCTGCCCAGCTTGTTTGAGACTTCATCAATGAGACAGATTCCAAATGGAATGGCTTGCTAAGGATGCTCTTGTAAGCACTTGGGGCATCTGCATTCGAACCCATAATCTGCAAGTAATGCTCGTCTCTGATCAAATGGTAGATCTTCGTCTATATATGAAATTGTCACC

Coding sequence (CDS)

ATGAAGTATCGTGGTAAGGTAATTCTTGGTGATCGTCCAGTGCAGATTACAATTAGAAGAGCATGGGCGAAAATGCCCCTTTGGCATAAGATAAAATTGCTTTATTCCTTCGTTTTTCAAGCATTCTTTTTGCCAAGCCCCGAGGAATTAACCAAGATGTTGAAGGATATGGACGATGTTGACATGCTCACGCTCATAATTCAAGAAATGAGCAAGGAATTTCCCACATTAATGGACACTCTTGTGCACGAGCGAGATCGGTACATGTCAACAACGTTACTAGGAGTAGCCAAGGAGCATCAATCGGTCGTTGCAGTTGTGGGGAAAGGTCATCTAAGTGGAATTAAGAAGAATTGGCAGCAGCCTGTTACTCTCGAGGATCTTTTGGAAATGCCTCCCCAAAAAGGAGTCCCTGTCATCAAGATCTTTTCGTCAATAGGTGTTGCAGTTGCTGGAGTTGCCATCATATCAGGTGTTTACCTTGCATGCAAAAAATAA

Protein sequence

MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDVDMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQQPVTLEDLLEMPPQKGVPVIKIFSSIGVAVAGVAIISGVYLACKK
Homology
[Close]
BLAST of Cucsat.G4856.T17 vs. ExPASy Swiss-Prot
Match: Q58DF3 (TraB domain-containing protein OS=Bos taurus OX=9913 GN=TRABD PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = 0 

Query: 6   KVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDVDMLTL 65
           K  LGDRP+ +T +RA A + LW K+KL +   F +   P  ++  +  K     D+L  
Sbjct: 185 KFHLGDRPIPVTFKRAIAALSLWQKVKLAWGLCFLSD--PISKDDVERCKQK---DLLEQ 244

Query: 66  IIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQ---------------SVVAVVGKG 125
           ++ EM  EFP L  T+V ERD Y++  L   A+  +                VV VVG G
Sbjct: 245 MMAEMVGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMG 304

Query: 126 HLSGIKKNWQQPVTLEDLLEMPP 134
           H+ GI+KNW   + +++++ +PP
Sbjct: 305 HVPGIEKNWTTDLNIQEIMTVPP 322

[Close]
BLAST of Cucsat.G4856.T17 vs. ExPASy Swiss-Prot
Match: Q99JY4 (TraB domain-containing protein OS=Mus musculus OX=10090 GN=Trabd PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-13
Identity = 47/143 (32.87%), Postives = 74/143 (51.75%), Query Frame = 0 

Query: 6   KVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDVDMLTL 65
           K  LGDRP+ +T +RA A +  W K+KL +   F +   P  ++  +  K     D+L  
Sbjct: 184 KFHLGDRPIPVTFKRAIAALSFWQKVKLAWGLCFLSD--PISKDDVERCKQK---DLLEQ 243

Query: 66  IIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQ---------------SVVAVVGKG 125
           ++ EM  EFP L  T+V ERD Y++  L   A+  +                VV VVG G
Sbjct: 244 MMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMG 303

Query: 126 HLSGIKKNWQQPVTLEDLLEMPP 134
           H+ GI+KNW   + +++++ +PP
Sbjct: 304 HVPGIEKNWSTDLNIQEIMTVPP 321

[Close]
BLAST of Cucsat.G4856.T17 vs. ExPASy Swiss-Prot
Match: Q9H4I3 (TraB domain-containing protein OS=Homo sapiens OX=9606 GN=TRABD PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.4e-13
Identity = 46/143 (32.17%), Postives = 74/143 (51.75%), Query Frame = 0 

Query: 6   KVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDVDMLTL 65
           K  LGDRP+ +T +RA A +  W K++L +   F +   P  ++  +  K     D+L  
Sbjct: 185 KFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLSD--PISKDDVERCKQK---DLLEQ 244

Query: 66  IIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQ---------------SVVAVVGKG 125
           ++ EM  EFP L  T+V ERD Y++  L   A+  +                VV VVG G
Sbjct: 245 MMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMG 304

Query: 126 HLSGIKKNWQQPVTLEDLLEMPP 134
           H+ GI+KNW   + +++++ +PP
Sbjct: 305 HVPGIEKNWSTDLNIQEIMTVPP 322

[Close]
BLAST of Cucsat.G4856.T17 vs. ExPASy Swiss-Prot
Match: Q58760 (Uncharacterized protein MJ1365 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1365 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.0e-07
Identity = 48/169 (28.40%), Postives = 87/169 (51.48%), Query Frame = 0 

Query: 2   KYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDM--DD 61
           KY   + L DR + IT+ R   +M    K+K+ +        L S EE  ++  D+  D 
Sbjct: 115 KYGLPIYLIDRDIDITLSRLMDRMTFKEKMKIFWE------LLNSDEEDLELDDDLLNDM 174

Query: 62  VDMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNW 121
           V      I+ + +  PT+ + LV ERDR+M+  L  ++K   S+VAVVG GH+ GI +  
Sbjct: 175 VKNPEKFIKLLKEISPTIYEVLVDERDRFMAKRLFELSKNKNSLVAVVGAGHVEGIVRYL 234

Query: 122 QQ-----PVTLEDLLEMPPQKGVPVIKIFSSIGVAVAGVAIISGVYLAC 164
           ++      + L +L+++  +K    +K   + G+++  ++I   +Y+ C
Sbjct: 235 KKLENGNDIDLMELIKVKKRK--KSLKKLLTYGISLTIISIF--LYMIC 273

[Close]
BLAST of Cucsat.G4856.T17 vs. NCBI nr
Match: XP_004151877.1 (traB domain-containing protein [Cucumis sativus])

HSP 1 Score: 320 bits (819), Expect = 2.95e-106
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 0 

Query: 1   MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 60
           MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV
Sbjct: 251 MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 310

Query: 61  DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 120
           DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ
Sbjct: 311 DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 370

Query: 121 QPVTLEDLLEMPPQKGVPVIKIFSSIGVAVAGVAIISGVYLACKK 165
           QPVTLEDLLEMP QKGVPV+KIFSSIGVAVAGVAIISGVYLACKK
Sbjct: 371 QPVTLEDLLEMPTQKGVPVVKIFSSIGVAVAGVAIISGVYLACKK 415

[Close]
BLAST of Cucsat.G4856.T17 vs. NCBI nr
Match: KAE8652300.1 (hypothetical protein Csa_022184 [Cucumis sativus])

HSP 1 Score: 320 bits (819), Expect = 2.95e-106
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 0 

Query: 1   MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 60
           MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV
Sbjct: 251 MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 310

Query: 61  DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 120
           DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ
Sbjct: 311 DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 370

Query: 121 QPVTLEDLLEMPPQKGVPVIKIFSSIGVAVAGVAIISGVYLACKK 165
           QPVTLEDLLEMP QKGVPV+KIFSSIGVAVAGVAIISGVYLACKK
Sbjct: 371 QPVTLEDLLEMPTQKGVPVVKIFSSIGVAVAGVAIISGVYLACKK 415

[Close]
BLAST of Cucsat.G4856.T17 vs. NCBI nr
Match: KAA0042435.1 (traB domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 307 bits (787), Expect = 2.07e-101
Identity = 158/165 (95.76%), Postives = 162/165 (98.18%), Query Frame = 0 

Query: 1   MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 60
           MKYRGKVILGDRPVQITIRRAWAKMPL  KIKLLYSFVFQAFFLPSPEELTKMLKDMDDV
Sbjct: 251 MKYRGKVILGDRPVQITIRRAWAKMPLCQKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 310

Query: 61  DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 120
           DMLTLIIQEMSKE+PTLMDTLVHERD+YMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ
Sbjct: 311 DMLTLIIQEMSKEYPTLMDTLVHERDQYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 370

Query: 121 QPVTLEDLLEMPPQKGVPVIKIFSSIGVAVAGVAIISGVYLACKK 165
           QPVTLEDLLEMPPQK VPV+KIF+SIGVAVAGVAIISGVYLACKK
Sbjct: 371 QPVTLEDLLEMPPQKRVPVLKIFTSIGVAVAGVAIISGVYLACKK 415

[Close]
BLAST of Cucsat.G4856.T17 vs. NCBI nr
Match: XP_008455837.1 (PREDICTED: traB domain-containing protein [Cucumis melo])

HSP 1 Score: 306 bits (785), Expect = 4.17e-101
Identity = 157/165 (95.15%), Postives = 162/165 (98.18%), Query Frame = 0 

Query: 1   MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 60
           MKYRGKVILGDRPVQITIRRAWAKMPL  KIKLLYSFVFQAFFLPSPEELTKMLKDMDDV
Sbjct: 251 MKYRGKVILGDRPVQITIRRAWAKMPLCKKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 310

Query: 61  DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 120
           DMLTLIIQEMSKE+PTLMDTLVHERD+YMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ
Sbjct: 311 DMLTLIIQEMSKEYPTLMDTLVHERDQYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 370

Query: 121 QPVTLEDLLEMPPQKGVPVIKIFSSIGVAVAGVAIISGVYLACKK 165
           QPVTLEDLLEMPPQK VPV+KIF+SIGVAVAGVAI+SGVYLACKK
Sbjct: 371 QPVTLEDLLEMPPQKRVPVLKIFTSIGVAVAGVAIVSGVYLACKK 415

[Close]
BLAST of Cucsat.G4856.T17 vs. NCBI nr
Match: TYJ98308.1 (traB domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 306 bits (785), Expect = 4.17e-101
Identity = 157/165 (95.15%), Postives = 162/165 (98.18%), Query Frame = 0 

Query: 1   MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 60
           MKYRGKVILGDRPVQITIRRAWAKMPL  KIKLLYSFVFQAFFLPSPEELTKMLKDMDDV
Sbjct: 251 MKYRGKVILGDRPVQITIRRAWAKMPLCKKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 310

Query: 61  DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 120
           DMLTLIIQEMSKE+PTLMDTLVHERD+YMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ
Sbjct: 311 DMLTLIIQEMSKEYPTLMDTLVHERDQYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 370

Query: 121 QPVTLEDLLEMPPQKGVPVIKIFSSIGVAVAGVAIISGVYLACKK 165
           QPVTLEDLLEMPPQK VPV+KIF+SIGVAVAGVAI+SGVYLACKK
Sbjct: 371 QPVTLEDLLEMPPQKRVPVLKIFTSIGVAVAGVAIVSGVYLACKK 415

[Close]
BLAST of Cucsat.G4856.T17 vs. ExPASy TrEMBL
Match: A0A0A0LTA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G422020 PE=4 SV=1)

HSP 1 Score: 320 bits (819), Expect = 1.43e-106
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 0 

Query: 1   MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 60
           MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV
Sbjct: 251 MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 310

Query: 61  DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 120
           DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ
Sbjct: 311 DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 370

Query: 121 QPVTLEDLLEMPPQKGVPVIKIFSSIGVAVAGVAIISGVYLACKK 165
           QPVTLEDLLEMP QKGVPV+KIFSSIGVAVAGVAIISGVYLACKK
Sbjct: 371 QPVTLEDLLEMPTQKGVPVVKIFSSIGVAVAGVAIISGVYLACKK 415

[Close]
BLAST of Cucsat.G4856.T17 vs. ExPASy TrEMBL
Match: A0A5A7TLX0 (TraB domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold266G00140 PE=4 SV=1)

HSP 1 Score: 307 bits (787), Expect = 1.00e-101
Identity = 158/165 (95.76%), Postives = 162/165 (98.18%), Query Frame = 0 

Query: 1   MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 60
           MKYRGKVILGDRPVQITIRRAWAKMPL  KIKLLYSFVFQAFFLPSPEELTKMLKDMDDV
Sbjct: 251 MKYRGKVILGDRPVQITIRRAWAKMPLCQKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 310

Query: 61  DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 120
           DMLTLIIQEMSKE+PTLMDTLVHERD+YMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ
Sbjct: 311 DMLTLIIQEMSKEYPTLMDTLVHERDQYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 370

Query: 121 QPVTLEDLLEMPPQKGVPVIKIFSSIGVAVAGVAIISGVYLACKK 165
           QPVTLEDLLEMPPQK VPV+KIF+SIGVAVAGVAIISGVYLACKK
Sbjct: 371 QPVTLEDLLEMPPQKRVPVLKIFTSIGVAVAGVAIISGVYLACKK 415

[Close]
BLAST of Cucsat.G4856.T17 vs. ExPASy TrEMBL
Match: A0A5D3BJE9 (TraB domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00240 PE=4 SV=1)

HSP 1 Score: 306 bits (785), Expect = 2.02e-101
Identity = 157/165 (95.15%), Postives = 162/165 (98.18%), Query Frame = 0 

Query: 1   MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 60
           MKYRGKVILGDRPVQITIRRAWAKMPL  KIKLLYSFVFQAFFLPSPEELTKMLKDMDDV
Sbjct: 251 MKYRGKVILGDRPVQITIRRAWAKMPLCKKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 310

Query: 61  DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 120
           DMLTLIIQEMSKE+PTLMDTLVHERD+YMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ
Sbjct: 311 DMLTLIIQEMSKEYPTLMDTLVHERDQYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 370

Query: 121 QPVTLEDLLEMPPQKGVPVIKIFSSIGVAVAGVAIISGVYLACKK 165
           QPVTLEDLLEMPPQK VPV+KIF+SIGVAVAGVAI+SGVYLACKK
Sbjct: 371 QPVTLEDLLEMPPQKRVPVLKIFTSIGVAVAGVAIVSGVYLACKK 415

[Close]
BLAST of Cucsat.G4856.T17 vs. ExPASy TrEMBL
Match: A0A1S3C338 (traB domain-containing protein OS=Cucumis melo OX=3656 GN=LOC103495939 PE=4 SV=1)

HSP 1 Score: 306 bits (785), Expect = 2.02e-101
Identity = 157/165 (95.15%), Postives = 162/165 (98.18%), Query Frame = 0 

Query: 1   MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 60
           MKYRGKVILGDRPVQITIRRAWAKMPL  KIKLLYSFVFQAFFLPSPEELTKMLKDMDDV
Sbjct: 251 MKYRGKVILGDRPVQITIRRAWAKMPLCKKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 310

Query: 61  DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 120
           DMLTLIIQEMSKE+PTLMDTLVHERD+YMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ
Sbjct: 311 DMLTLIIQEMSKEYPTLMDTLVHERDQYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 370

Query: 121 QPVTLEDLLEMPPQKGVPVIKIFSSIGVAVAGVAIISGVYLACKK 165
           QPVTLEDLLEMPPQK VPV+KIF+SIGVAVAGVAI+SGVYLACKK
Sbjct: 371 QPVTLEDLLEMPPQKRVPVLKIFTSIGVAVAGVAIVSGVYLACKK 415

[Close]
BLAST of Cucsat.G4856.T17 vs. ExPASy TrEMBL
Match: A0A6J1CGW1 (traB domain-containing protein OS=Momordica charantia OX=3673 GN=LOC111011104 PE=4 SV=1)

HSP 1 Score: 301 bits (771), Expect = 2.57e-99
Identity = 152/165 (92.12%), Postives = 160/165 (96.97%), Query Frame = 0 

Query: 1   MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 60
           MKY GKVILGDRPVQITIRRAWAKMPLWHKIKLLYSF+FQAFFLPSPEELTKMLKDMDDV
Sbjct: 250 MKYGGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFLFQAFFLPSPEELTKMLKDMDDV 309

Query: 61  DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 120
           DMLTLIIQEMSKEFPTLMDTLVHERD+YMS+TLL VAKEH SVVAVVGKGHLSGIKKNWQ
Sbjct: 310 DMLTLIIQEMSKEFPTLMDTLVHERDQYMSSTLLRVAKEHHSVVAVVGKGHLSGIKKNWQ 369

Query: 121 QPVTLEDLLEMPPQKGVPVIKIFSSIGVAVAGVAIISGVYLACKK 165
           QPVTL+DLLEMP QK VPV+KIF+SIGVAVAGVAI+SG+YLACKK
Sbjct: 370 QPVTLKDLLEMPEQKRVPVVKIFTSIGVAVAGVAIVSGIYLACKK 414

[Close]
BLAST of Cucsat.G4856.T17 vs. TAIR 10
Match: AT1G05270.1 (TraB family protein )

HSP 1 Score: 239.6 bits (610), Expect = 1.8e-63
Identity = 115/166 (69.28%), Postives = 143/166 (86.14%), Query Frame = 0 

Query: 1   MKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDV 60
           +KY GKVILGDRPVQIT++R WAKMPLWHK+K LYS +FQA FLP  EEL KMLKDMD+V
Sbjct: 206 IKYGGKVILGDRPVQITLKRTWAKMPLWHKVKFLYSILFQAVFLPGAEELEKMLKDMDNV 265

Query: 61  DMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQ 120
           DM+TL+IQEMSKEFPTLMDT+VHERD+YM+++LL VA +H SVVAV+GKGH++GIKKNW+
Sbjct: 266 DMVTLVIQEMSKEFPTLMDTIVHERDQYMASSLLRVASDHSSVVAVIGKGHINGIKKNWK 325

Query: 121 QPVTLEDLLEMPPQKGVPVIK-IFSSIGVAVAGVAIISGVYLACKK 166
           QP+T+ DL+E+P  K V  +K I SS+ VAVAG AI+SG+ L+ +K
Sbjct: 326 QPITMNDLMEIPSDKSVFTLKRIISSVAVAVAGTAIVSGILLSRRK 371

[Close]
BLAST of Cucsat.G4856.T17 vs. TAIR 10
Match: AT2G32340.1 (TraB family protein )

HSP 1 Score: 208.0 bits (528), Expect = 5.8e-54
Identity = 103/162 (63.58%), Postives = 127/162 (78.40%), Query Frame = 0 

Query: 2   KYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLPSPEELTKMLKDMDDVD 61
           KY G+V LGDR VQIT++R W KMPLWHKIKL+YS V QA FLP+P+EL KMLKD+ D D
Sbjct: 198 KYGGRVFLGDRSVQITLQRTWGKMPLWHKIKLVYSIVSQAVFLPNPKELEKMLKDLGDGD 257

Query: 62  MLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVAVVGKGHLSGIKKNWQQ 121
           MLTL IQEMS EFPTLM+TLVHERD+YM+  LL +A EH SVVAVVG+GHL GIKKNW Q
Sbjct: 258 MLTLAIQEMSTEFPTLMETLVHERDKYMAYQLLRIASEHSSVVAVVGRGHLQGIKKNWNQ 317

Query: 122 PVTLEDLLEMPPQKGVPVIK-IFSSIGVAVAGVAIISGVYLA 163
            + +++L+E+P  + +  +K I   + V V G AI+SG+YLA
Sbjct: 318 TINIKELMELPTNESIFTVKNILKYMVVVVVGTAIVSGMYLA 359

[Close]
BLAST of Cucsat.G4856.T17 vs. TAIR 10
Match: AT5G52030.2 (TraB family protein )

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-09
Identity = 35/114 (30.70%), Postives = 65/114 (57.02%), Query Frame = 0 

Query: 6   KVILGDRPVQITIRRAWAKMPLWHKIKLLYSF--VFQAFFLPSPEELTKMLKDMDDVDML 65
           +++LGDRP++IT++RAW  +    K  L+ +   V  +    S  EL +  ++ D+    
Sbjct: 224 QLVLGDRPIEITLQRAWNSLKWGEKFNLVMAVTRVITSSSGISAAELKE--QETDENSGS 283

Query: 66  TLIIQEMSKEFPTLMDTLVHERDRYMSTTL--LGVAKEHQSVVAVVGKGHLSGI 116
             + + +S  +P L+  L+HERD Y++ +L         ++VV V+GKGH++G+
Sbjct: 284 LQLYERLSFSYPALLMPLIHERDTYLAWSLKRSKAVNGCKTVVGVIGKGHMNGV 335

[Close]
BLAST of Cucsat.G4856.T17 vs. TAIR 10
Match: AT5G52030.1 (TraB family protein )

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-09
Identity = 35/114 (30.70%), Postives = 65/114 (57.02%), Query Frame = 0 

Query: 6   KVILGDRPVQITIRRAWAKMPLWHKIKLLYSF--VFQAFFLPSPEELTKMLKDMDDVDML 65
           +++LGDRP++IT++RAW  +    K  L+ +   V  +    S  EL +  ++ D+    
Sbjct: 80  QLVLGDRPIEITLQRAWNSLKWGEKFNLVMAVTRVITSSSGISAAELKE--QETDENSGS 139

Query: 66  TLIIQEMSKEFPTLMDTLVHERDRYMSTTL--LGVAKEHQSVVAVVGKGHLSGI 116
             + + +S  +P L+  L+HERD Y++ +L         ++VV V+GKGH++G+
Sbjct: 140 LQLYERLSFSYPALLMPLIHERDTYLAWSLKRSKAVNGCKTVVGVIGKGHMNGV 191

The following BLAST results are available for this feature:
BLAST of Cucsat.G4856.T17 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q58DF31.3e-1333.57TraB domain-containing protein OS=Bos taurus OX=9913 GN=TRABD PE=2 SV=1[more]
Q99JY42.9e-1332.87TraB domain-containing protein OS=Mus musculus OX=10090 GN=Trabd PE=1 SV=1[more]
Q9H4I36.4e-1332.17TraB domain-containing protein OS=Homo sapiens OX=9606 GN=TRABD PE=1 SV=1[more]
Q587604.0e-0728.40Uncharacterized protein MJ1365 OS=Methanocaldococcus jannaschii (strain ATCC 430... [more]
BLAST of Cucsat.G4856.T17 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151877.12.95e-10698.79traB domain-containing protein [Cucumis sativus][more]
KAE8652300.12.95e-10698.79hypothetical protein Csa_022184 [Cucumis sativus][more]
KAA0042435.12.07e-10195.76traB domain-containing protein [Cucumis melo var. makuwa][more]
XP_008455837.14.17e-10195.15PREDICTED: traB domain-containing protein [Cucumis melo][more]
TYJ98308.14.17e-10195.15traB domain-containing protein [Cucumis melo var. makuwa][more]
BLAST of Cucsat.G4856.T17 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTA71.43e-10698.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G422020 PE=4 SV=1[more]
A0A5A7TLX01.00e-10195.76TraB domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3BJE92.02e-10195.15TraB domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3C3382.02e-10195.15traB domain-containing protein OS=Cucumis melo OX=3656 GN=LOC103495939 PE=4 SV=1[more]
A0A6J1CGW12.57e-9992.12traB domain-containing protein OS=Momordica charantia OX=3673 GN=LOC111011104 PE... [more]
BLAST of Cucsat.G4856.T17 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G05270.11.8e-6369.28TraB family protein [more]
AT2G32340.15.8e-5463.58TraB family protein [more]
AT5G52030.25.7e-0930.70TraB family protein [more]
AT5G52030.15.7e-0930.70TraB family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002816TraB/PrgY/GumN familyPFAMPF01963TraBcoord: 8..121
e-value: 1.2E-19
score: 71.3
NoneNo IPR availablePANTHERPTHR21530PHEROMONE SHUTDOWN PROTEINcoord: 1..165
NoneNo IPR availablePANTHERPTHR21530:SF7TRAB FAMILY PROTEINcoord: 1..165
NoneNo IPR availableCDDcd14726TraB_PrgY-likecoord: 1..119
e-value: 1.30009E-31
score: 109.97

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G4856Cucsat.G4856gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G4856.T17.E1Cucsat.G4856.T17.E1exon
Cucsat.G4856.T17.E2Cucsat.G4856.T17.E2exon
Cucsat.G4856.T17.E3Cucsat.G4856.T17.E3exon
Cucsat.G4856.T17.E4Cucsat.G4856.T17.E4exon
Cucsat.G4856.T17.E5Cucsat.G4856.T17.E5exon
Cucsat.G4856.T17.E6Cucsat.G4856.T17.E6exon
Cucsat.G4856.T17.E7Cucsat.G4856.T17.E7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G4856.T17.C1Cucsat.G4856.T17.C1CDS
Cucsat.G4856.T17.C2Cucsat.G4856.T17.C2CDS
Cucsat.G4856.T17.C3Cucsat.G4856.T17.C3CDS
Cucsat.G4856.T17.C4Cucsat.G4856.T17.C4CDS
Cucsat.G4856.T17.C5Cucsat.G4856.T17.C5CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G4856.T17Cucsat.G4856.T17-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031307 integral component of mitochondrial outer membrane