Cucsat.G4847.T3 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G4847.T3
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionhigh mobility group
Locationctg1227: 4999413 .. 5001030 (+)
RNA-Seq ExpressionCucsat.G4847.T3
SyntenyCucsat.G4847.T3
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAAGCCTCACAAATTCTCTGTTGATTTTTATCTTGAGGATAACAAAGAAAACTTTGTGTTGTTCTTTGAAAGGATTCAAGAATTCTTGGGAGATTTTACAAAAGTTAGTTTTATTTCTTCTTTACCTTCATATAAGCATGTTTGAATGTTTTCTCTAAATTTTATATGTTTCTAGTTGAATTTCTTTTGCATGACGTTCACACGCTTCCGCTATGGGAATTTCATTTCTTCATGTTTAACTTTAGAACAATATGTATGCTTGCACAAATTTAGCTTCATAGACATGTTGATATCATAAAAGTGTAAATGAATTAATTTCTCATATTGTTTAAAAGAATAAAATACAATGTAATTTCGGTAGCAACATATGCTATACATTCTGTCAAATACTATAGAATTAATATGGAAATAATAGTACTTGTCCTCTAGTATGTACAATACACTATATAACTCTATAAAATAAATCCACTTATCATATAATATTTAACCAATAATTCAAATTTATTAAATTTGAGAAAAACAAATAACATATTTTGATTGATAGCAATATAAAGAAGGTAAGATCAACCCTGAGATTCTTCCCAAATTATAAAAAACTTTTTGAAAGATTTATCTTGATCTCTCTTGGCCGAGTGCATCATCGAGAGAGTGCGTTTTCATTAAAAAATTGAAATTGAGGTTAACTCTTCTCGGGCCAAATTTGTCATGAGAGTCCTTGTTGGGATTTATGTGTTCTAAAGTCTTCTTTGATCCGAGATCATACAATAACCTTGAATTTTTTCAATTAATGCACAAATTAATATTGCATAATCAATGATCCTCAGCCAAAGTTGCCTCTAGATAACCCCAAGATCATACTAAATAAGCATTATGTCAATGATATTGTTAATTTTTTCAATTATGTCAATGATCTCGGGCCATTGTTGCTCTAAGATGACCCCAAGATCATACCAGATAAGCATTATGTCAATGATATTGTCAATTTTTTCAATTATGTCAATTTTTCCAATTATGTCAATTTTTCCAATTATGTCAATGATTCTAGGCTAATATTGCCCCGAGATGGCCAAAGATCATACCACATAAGCATTATGTGAATGATATTGTCAATGTCTCCAATTACGTCAATGATTCCAGGTCAATATTGCTTCAAGATGACCCTGAGATCCAACTACATAAGCATTATGATGTTAATGATATTGTCAATTTTCCTAATTATGTCAATGATCCCGGACCAATGTTGCCTCGAGATGGCCCGAGATCCAACTACATAAGTATTATTATGATGTCAATGATATTGTCAACTTCCCCAATTATGTCAATGATCTTGGACCAATGTTGCTCCGAGATCCAACTACATAAGCATTATGTCAATGGTATTGTTAACTTCCCCAATTATGTGAATGATCTCATATCAATATTGTCTCAAGATGGTCTTGAGATCCAACTATATAAGCATTATTTGAATGATATTGCATATTTTTATTAATAATGTTACAAAATTGCAATTAGAATTCGTAGACTTTTCTACCAAAAGAGATGTTTACAAGTTAATGACTTGGATCAAATATCACTATTTAATGACTCTGATTAAGTGTCACTATTTAATTACTGTT

Coding sequence (CDS)

ACAAAGCCTCACAAATTCTCTGTTGATTTTTATCTTGAGGATAACAAAGAAAACTTTGTGTTGTTCTTTGAAAGGATTCAAGAATTCTTGGGAGATTTTACAAAAGCTAATATTGCCCCGAGATGGCCAAAGATCATACCACATAAGCATTATGTGAATGATATTGTCAATGTCTCCAATTACGTCAATGATTCCAGGTCAATATTGCTTCAAGATGACCCTGAGATCCAACTACATAAGCATTATGATGTTAATGATATTGTCAATTTTCCTAATTATGTCAATGATCCCGGACCAATGTTGCCTCGAGATGGCCCGAGATCCAACTACATAAGTATTATTATGATGTCAATGATATTGTCAACTTCCCCAATTATGTCAATGATCTTGGACCAATGTTGCTCCGAGATCCAACTACATAAGCATTATGTCAATGGTATTGTTAACTTCCCCAATTATGTGAATGATCTCATATCAATATTGTCTCAAGATGGTCTTGAGATCCAACTATATAAGCATTATTTGAATGATATTGCATATTTTTATTAA

Protein sequence

TKPHKFSVDFYLEDNKENFVLFFERIQEFLGDFTKANIAPRWPKIIPHKHYVNDIVNVSNYVNDSRSILLQDDPEIQLHKHYDVNDIVNFPNYVNDPGPMLPRDGPRSNYISIIMMSMILSTSPIMSMILDQCCSEIQLHKHYVNGIVNFPNYVNDLISILSQDGLEIQLYKHYLNDIAYFY
Homology
The following BLAST results are available for this feature:
BLAST of Cucsat.G4847.T3 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G4847.T3 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G4847.T3 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G4847.T3 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G4847Cucsat.G4847gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G4847.T3.E1Cucsat.G4847.T3.E1exon
Cucsat.G4847.T3.E2Cucsat.G4847.T3.E2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G4847.T3.C1Cucsat.G4847.T3.C1CDS
Cucsat.G4847.T3.C2Cucsat.G4847.T3.C2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G4847.T3Cucsat.G4847.T3-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006333 chromatin assembly or disassembly
cellular_component GO:0000785 chromatin
cellular_component GO:0005634 nucleus
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0030527 structural constituent of chromatin