Cucsat.G4847 (gene) Cucumber (B10) v3

Overview
NameCucsat.G4847
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionhigh mobility group
Locationctg1227: 4999413 .. 5003394 (+)
RNA-Seq ExpressionCucsat.G4847
SyntenyCucsat.G4847
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAAGCCTCACAAATTCTCTGTTGATTTTTATCTTGAGGATAACAAAGAAAACTTTGTGTTGTTCTTTGAAAGGATTCAAGAATTCTTGGGAGATTTTACAAAAGTTAGTTTTATTTCTTCTTTACCTTCATATAAGCATGTTTGAATGTTTTCTCTAAATTTTATATGTTTCTAGTTGAATTTCTTTTGCATGACGTTCACACGCTTCCGCTATGGGAATTTCATTTCTTCATGTTTAACTTTAGAACAATATGTATGCTTGCACAAATTTAGCTTCATAGACATGTTGATATCATAAAAGTGTAAATGAATTAATTTCTCATATTGTTTAAAAGAATAAAATACAATGTAATTTCGGTAGCAACATATGCTATACATTCTGTCAAATACTATAGAATTAATATGGAAATAATAGTACTTGTCCTCTAGTATGTACAATACACTATATAACTCTATAAAATAAATCCACTTATCATATAATATTTAACCAATAATTCAAATTTATTAAATTTGAGAAAAACAAATAACATATTTTGATTGATAGCAATATAAAGAAGGTAAGATCAACCCTGAGATTCTTCCCAAATTATAAAAAACTTTTTGAAAGATTTATCTTGATCTCTCTTGGCCGAGTGCATCATCGAGAGAGTGCGTTTTCATTAAAAAATTGAAATTGAGGTTAACTCTTCTCGGGCCAAATTTGTCATGAGAGTCCTTGTTGGGATTTATGTGTTCTAAAGTCTTCTTTGATCCGAGATCATACAATAACCTTGAATTTTTTCAATTAATGCACAAATTAATATTGCATAATCAATGATCCTCAGCCAAAGTTGCCTCTAGATAACCCCAAGATCATACTAAATAAGCATTATGTCAATGATATTGTTAATTTTTTCAATTATGTCAATGATCTCGGGCCATTGTTGCTCTAAGATGACCCCAAGATCATACCAGATAAGCATTATGTCAATGATATTGTCAATTTTTTCAATTATGTCAATTTTTCCAATTATGTCAATTTTTCCAATTATGTCAATGATTCTAGGCTAATATTGCCCCGAGATGGCCAAAGATCATACCACATAAGCATTATGTGAATGATATTGTCAATGTCTCCAATTACGTCAATGATTCCAGGTCAATATTGCTTCAAGATGACCCTGAGATCCAACTACATAAGCATTATGATGTTAATGATATTGTCAATTTTCCTAATTATGTCAATGATCCCGGACCAATGTTGCCTCGAGATGGCCCGAGATCCAACTACATAAGTATTATTATGATGTCAATGATATTGTCAACTTCCCCAATTATGTCAATGATCTTGGACCAATGTTGCTCCGAGATCCAACTACATAAGCATTATGTCAATGGTATTGTTAACTTCCCCAATTATGTGAATGATCTCATATCAATATTGTCTCAAGATGGTCTTGAGATCCAACTATATAAGCATTATTTGAATGATATTGCATATTTTTATTAATAATGTTACAAAATTGCAATTAGAATTCGTAGACTTTTCTACCAAAAGAGATGTTTACAAGTTAATGACTTGGATCAAATATCACTATTTAATGACTCTGATTAAGTGTCACTATTTAATTACTGTTTTTAATAATAGTTAAATGATGATGCAATGAAAGTGTCATAGCATGGGAAAGTTTGTAATTTTCCACCAATTTTCGCTAAAACTGCGCTGTTGTGAAAAGTGTTTTAATGACTTATTTTTCTTTCATTAATTTTTTTTGCTACTATTGATTAGTAATAGAAAGCCATTTTTGTTGTAGTATGATACAAATCAACAAATATAATAACAAATTACATTAATCAAATTACATTAACATTAACAATTTTCATTATTAGCGAGCAGTTGGGAAACTAAAACTAGGTTGGAAGTGTCACTATGATTAAGGAAATAAGATAATGAGAAAATTGATGAAGAGGGTGATCGGGTCCCAACCGTTATTGTTATTGTGGAAGATTATCCATGGCTGAAAGTTAATGTTCTTATTCTTCAAGAATAACGAAGGCGAGAGCTTCTTCTTATACCACAATAAAACTCACATTCATAAAATGGGATGTACCAATATCCAATTCACTTACACTTACCCTTTCCTCCATAACTAACATACCATGAATTATGGAATGAATTCGTGTTCATTTCCCGCCACAATTCAGTAATTTTGGTTGCATTCCGATTTCATCTTCATTTGAATTTAACATTTCGGATTCAATTTCCCATCACTACTCATCACGCATTATATAAATTCAAGCCCTTCTCTCTTTTCCCCCTTCATTTCATCACTCTCCCTTTTCCTTCTCTGCGCCTCTCTCCTAATTCTACGGAACCACCATGAGAGCTCTCAGGAACGCCGTCGTCACTCACAAGAAACCCAACCCACAGTAATCTTCTCCTTCTTCACGATGATTTTCAGCGTCTTCTTTTTGCTTTTCATCTTCAATAAGTTATTACATTCTTTTGTTTCCATTTTTTTTATGCAAGTTTTTGCATCCTGTATGGTTCGTTTCTTTTCTTCAACTTTGATTCTATGCAATTTTCATCCCTCTATTTTTTCTCTTCTTATGCTTTCATTTTTCTTTCTAATTTATTTTTATTTTCTTTTGTAATGTTTCGCCTCTTTGTTTGTTCCTAACTGAGTTGAATTTTACAGCCTGCGTTGTGTACTTCTTGTATGTTTTTAATAGTTTTGCTTTCCTATTACGCAAGGTTTCTTCATTTCTCTGCATACCTGAACTACTCTAATGATATTATTCATTTACTCTGTATTTTAACTCTTTTAGTTTTCCTACGTTTTTGGCTATAATACTAAATTGAATATACTCCTAAAGCTTTTATCATTGATCCGCTTTTTGAAGGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGCAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGACATTCTTCGTTTTCATGTAAGTACAGTTTATAATTGAGGCTGCTTCCGTTTTGAAAGTCGTTCATACATTCTAGTTTTCATTAGATTTTTCCATTCTGATTTCGAGTTCTTGCTTGGGAAATGATAGGGAGGAATTTAGAAAGACGTACAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTAAGATCTTATACTGTTGTTTTGATCAGCATTACTTTCTTATTATTCCTCCATATTTATGTTTTTAGATATGGCTGAGTGGAGGATCGGAGGACTTCTTGAGTTAGCTAGATTTTGTTATTTGCGTTTAACTGTGTTTTGTTAATTTGCAGGTCGGCAAAGTTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGTAAGACTCTCTTATTTTCGTACTATTTTCATAGAACACTAATTGGAGACTATCAACAATAAATGACTAAGGAATAAGATCGGAGGTTATCAGTTCTTCCACTTTAATTGAAGATCGTTTCACGTTTTGTTCTCAGTATTCAATTCGAGACTAATTGATGATACAAATCTGTGGTAATCGTGTCTCTTCCTCAGGAAAAAGCTCCGTATGCTGAAAAAGCTTTGAAAAGAAAGGCAGAGTATGAAATAGCTCTTGAAGCATACAAGAACAACCTCGTAATTAAATTGTTCCCACTCTATCTCTACTTTCACTCTTTCTCCTTCACTTCGTCAGAAGATGATCACCACGGTTTTATTGATCATCGAATCTCTCTTCTCTCTAACATCTCATGGTTCACAGAATTGCCCTCAGAATCACAGAATGCCAACAGAATCACAGAAATCAACCTCTGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTAGGTATTGTTTTCCCATCCAAAACATGCAGCACAAATTCATATGCATTATCTTCTCCCATTGTTTCTTTTAGTTAAATTATAGATGTTTGATTTTATCCCTACGGCTAGAAGCTGATATTTGTTTTTGTATATGGTCTG

Coding sequence (CDS)

CAAAGCCTCACAAATTCTCTGTTGATTTTTATCTTGAGGATAACAAAGAAAACTTTGTGTTGTTCTTTGAAAGGATTCAAGAATTCTTGGGAGATTTTACAAAAGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGCAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGACATTCTTCGTTTTCATGGAGGAATTTAGAAAGACGTACAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGTTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTATGCTGAAAAAGCTTTGAAAAGAAAGGCAGAGTATGAAATAGCTCTTGAAGCATACAAGAACAACCTCAATTGCCCTCAGAATCACAGAATGCCAACAGAATCACAGAAATCAACCTCTGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTAG

Protein sequence

QSLTNSLLIFILRITKKTLCCSLKGFKNSWEILQKKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMPTESQKSTSEVNDDTEQEASSSS
Homology
[Close]
BLAST of Cucsat.G4847 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-24
Identity = 69/136 (50.74%), Postives = 84/136 (61.76%), Query Frame = 0 

Query: 23  LKGFKNSWEILQKKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDA 82
           +KG K+  E    KL   K   K  K   KD N PKRP++ FFVFME+FR TYKE+ P  
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKN 60

Query: 83  KAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMPTESQ 142
           K+   VGK GGEKWKS+SD+EKAPY  KA KRK EYE  ++AY   L   +  +   ES 
Sbjct: 61  KSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLE--EGPKEDEESD 120

Query: 143 KSTSEVNDDTEQEASS 159
           KS SEVND+ + E  S
Sbjct: 121 KSVSEVNDEDDAEDGS 134

[Close]
BLAST of Cucsat.G4847 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.8e-24
Identity = 63/116 (54.31%), Postives = 77/116 (66.38%), Query Frame = 0 

Query: 38  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWK 97
           K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWK
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 98  SMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMPTESQKSTSEVNDDTE 154
           SMS AEKAPY EKA KRKAEYE  ++AY  NL          ES+KS SE+ND+ E
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL-----EEGSDESEKSRSEINDEDE 144

[Close]
BLAST of Cucsat.G4847 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-23
Identity = 65/122 (53.28%), Postives = 80/122 (65.57%), Query Frame = 0 

Query: 37  LKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKW 96
           +K++ A+ K TK   KD N PKRP + FFVFME+FRKTYKE+ P+ K+  VVGK GG+KW
Sbjct: 16  VKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKW 75

Query: 97  KSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMPTESQKSTSEVNDDTEQEA 156
           K ++ AEKAP+  KA KRK EYE  L+AY  N           ES KS SEVNDD E + 
Sbjct: 76  KQLTAAEKAPFISKAEKRKQEYEKNLQAY--NKKQAAGAAEEEESDKSRSEVNDDDEDQD 135

Query: 157 SS 159
            S
Sbjct: 136 GS 135

[Close]
BLAST of Cucsat.G4847 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.6e-22
Identity = 66/139 (47.48%), Postives = 85/139 (61.15%), Query Frame = 0 

Query: 23  LKGFKNSWEILQKKLKQRKAEMKST---KSKKKDQNAPKRPATTFFVFMEEFRKTYKEQF 82
           +KG K+  E    KL   K   K     K+  KD N PKRPA+ FFVFME+FR+T+K++ 
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 83  PDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMPT 142
           P  K+   VGK  G+KWKS+SD+EKAPY  KA KRK EYE  ++AY   L   +  +   
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLE--EGPKEDE 120

Query: 143 ESQKSTSEVNDDTEQEASS 159
           ES KS SEVND+ + E  S
Sbjct: 121 ESDKSVSEVNDEDDAEDGS 137

[Close]
BLAST of Cucsat.G4847 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-19
Identity = 62/127 (48.82%), Postives = 75/127 (59.06%), Query Frame = 0 

Query: 33  LQKKLKQRKAEMKSTKSK-KKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKV 92
           + KK    KA   + K K  KD N PKRP + FFVFMEEFRK + ++ P+ KA   VGK 
Sbjct: 19  VNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKA 78

Query: 93  GGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMPTESQKSTSEVNDD 152
            G KWK+MSDAEKAPY  K+ KRK EYE  + AY              ES+KS SEVND+
Sbjct: 79  AGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDE 138

Query: 153 TEQEASS 159
            + E  S
Sbjct: 139 DDDEEGS 145

[Close]
BLAST of Cucsat.G4847 vs. NCBI nr
Match: XP_031737208.1 (high mobility group B protein 3-like isoform X2 [Cucumis sativus])

HSP 1 Score: 235 bits (600), Expect = 6.05e-77
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 36  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEK 95
           KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEK
Sbjct: 18  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEK 77

Query: 96  WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMPTESQKSTSEVNDDTEQE 155
           WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMPTESQKSTSEVNDDTEQE
Sbjct: 78  WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMPTESQKSTSEVNDDTEQE 137

Query: 156 ASSSS 160
           ASSSS
Sbjct: 138 ASSSS 142

[Close]
BLAST of Cucsat.G4847 vs. NCBI nr
Match: XP_008455870.1 (PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 204 bits (520), Expect = 1.05e-64
Identity = 114/129 (88.37%), Postives = 115/129 (89.15%), Query Frame = 0 

Query: 36  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEK 95
           KLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEK
Sbjct: 18  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEK 77

Query: 96  WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNC----PQNHRMPTESQKSTSEVNDD 155
           WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN NC         MPTESQKSTSEVNDD
Sbjct: 78  WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDD 137

Query: 156 TEQEASSSS 160
           TEQEASSSS
Sbjct: 138 TEQEASSSS 146

[Close]
BLAST of Cucsat.G4847 vs. NCBI nr
Match: XP_008455869.1 (PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo])

HSP 1 Score: 197 bits (501), Expect = 1.07e-61
Identity = 114/137 (83.21%), Postives = 115/137 (83.94%), Query Frame = 0 

Query: 36  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEK 95
           KLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEK
Sbjct: 18  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEK 77

Query: 96  WKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKNNLNC----PQNHRMPTESQK 155
           WKSMSDA        EKAPYAEKALKRKAEYEIALEAYKNN NC         MPTESQK
Sbjct: 78  WKSMSDAVRLRFLILEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQK 137

Query: 156 STSEVNDDTEQEASSSS 160
           STSEVNDDTEQEASSSS
Sbjct: 138 STSEVNDDTEQEASSSS 154

[Close]
BLAST of Cucsat.G4847 vs. NCBI nr
Match: TYK24219.1 (high mobility group B protein 1-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 193 bits (490), Expect = 1.73e-60
Identity = 106/121 (87.60%), Postives = 107/121 (88.43%), Query Frame = 0 

Query: 44  MKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAE 103
           MKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEKWKSMSDAE
Sbjct: 1   MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAE 60

Query: 104 KAPYAEKALKRKAEYEIALEAYKNNLNC----PQNHRMPTESQKSTSEVNDDTEQEASSS 160
           KAPYAEKALKRKAEYEIALEAYKNN NC         MPTESQKSTSEVNDDTEQEASSS
Sbjct: 61  KAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSS 120

[Close]
BLAST of Cucsat.G4847 vs. NCBI nr
Match: XP_038902242.1 (high mobility group B protein 1-like [Benincasa hispida])

HSP 1 Score: 192 bits (489), Expect = 6.07e-60
Identity = 109/131 (83.21%), Postives = 114/131 (87.02%), Query Frame = 0 

Query: 37  LKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGG 96
           LKQRK EMKSTKSKK   KDQNAPKRPAT FFVFMEEFRKT+KE+FPDAKAGPVVGK GG
Sbjct: 19  LKQRKTEMKSTKSKKATKKDQNAPKRPATAFFVFMEEFRKTFKEEFPDAKAGPVVGKAGG 78

Query: 97  EKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHR----MPTESQKSTSEVN 156
           EKWKSMSD EKAPYAEKAL+RKAEYEIALEAYK NLNC  +      MPTESQKSTSEV+
Sbjct: 79  EKWKSMSDTEKAPYAEKALRRKAEYEIALEAYKKNLNCCADAEAEIEMPTESQKSTSEVH 138

Query: 157 DDTEQEASSSS 160
           DD EQEASSSS
Sbjct: 139 DDAEQEASSSS 149

[Close]
BLAST of Cucsat.G4847 vs. ExPASy TrEMBL
Match: A0A1S3C2L9 (high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 204 bits (520), Expect = 5.11e-65
Identity = 114/129 (88.37%), Postives = 115/129 (89.15%), Query Frame = 0 

Query: 36  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEK 95
           KLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEK
Sbjct: 18  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEK 77

Query: 96  WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNC----PQNHRMPTESQKSTSEVNDD 155
           WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN NC         MPTESQKSTSEVNDD
Sbjct: 78  WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDD 137

Query: 156 TEQEASSSS 160
           TEQEASSSS
Sbjct: 138 TEQEASSSS 146

[Close]
BLAST of Cucsat.G4847 vs. ExPASy TrEMBL
Match: A0A1S3C1W5 (HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 197 bits (501), Expect = 5.16e-62
Identity = 114/137 (83.21%), Postives = 115/137 (83.94%), Query Frame = 0 

Query: 36  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEK 95
           KLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEK
Sbjct: 18  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEK 77

Query: 96  WKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKNNLNC----PQNHRMPTESQK 155
           WKSMSDA        EKAPYAEKALKRKAEYEIALEAYKNN NC         MPTESQK
Sbjct: 78  WKSMSDAVRLRFLILEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQK 137

Query: 156 STSEVNDDTEQEASSSS 160
           STSEVNDDTEQEASSSS
Sbjct: 138 STSEVNDDTEQEASSSS 154

[Close]
BLAST of Cucsat.G4847 vs. ExPASy TrEMBL
Match: A0A5D3DLQ9 (High mobility group B protein 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00210 PE=3 SV=1)

HSP 1 Score: 193 bits (490), Expect = 8.37e-61
Identity = 106/121 (87.60%), Postives = 107/121 (88.43%), Query Frame = 0 

Query: 44  MKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAE 103
           MKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEKWKSMSDAE
Sbjct: 1   MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAE 60

Query: 104 KAPYAEKALKRKAEYEIALEAYKNNLNC----PQNHRMPTESQKSTSEVNDDTEQEASSS 160
           KAPYAEKALKRKAEYEIALEAYKNN NC         MPTESQKSTSEVNDDTEQEASSS
Sbjct: 61  KAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSS 120

[Close]
BLAST of Cucsat.G4847 vs. ExPASy TrEMBL
Match: A0A5A7UHY3 (HMG1/2-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1248G00010 PE=3 SV=1)

HSP 1 Score: 184 bits (467), Expect = 3.43e-57
Identity = 105/129 (81.40%), Postives = 107/129 (82.95%), Query Frame = 0 

Query: 44  MKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDA- 103
           MKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEKWKSMSDA 
Sbjct: 1   MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAV 60

Query: 104 -------EKAPYAEKALKRKAEYEIALEAYKNNLNC----PQNHRMPTESQKSTSEVNDD 160
                  EKAPYAEKALKRKAEYEIALEAYKNN NC         MPTESQKSTSEVND+
Sbjct: 61  RLRFLILEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDE 120

[Close]
BLAST of Cucsat.G4847 vs. ExPASy TrEMBL
Match: A0A6J1CIL2 (high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011298 PE=3 SV=1)

HSP 1 Score: 182 bits (463), Expect = 2.48e-56
Identity = 103/129 (79.84%), Postives = 110/129 (85.27%), Query Frame = 0 

Query: 37  LKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGG 96
           LKQRKAEMKSTKS K   KDQNAPKRPAT FF+FMEEFRKT+KE+FPDAKAGP VGK GG
Sbjct: 19  LKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGG 78

Query: 97  EKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHR--MPTESQKSTSEVNDD 156
           EKWKS+SDAEKAPYAEKAL RK EY IALEAYK  LNC  +    MPTESQKSTSEV+DD
Sbjct: 79  EKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDD 138

Query: 157 TEQEASSSS 160
            +QEASSSS
Sbjct: 139 VDQEASSSS 147

[Close]
BLAST of Cucsat.G4847 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 114.4 bits (285), Expect = 8.5e-26
Identity = 69/136 (50.74%), Postives = 84/136 (61.76%), Query Frame = 0 

Query: 23  LKGFKNSWEILQKKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDA 82
           +KG K+  E    KL   K   K  K   KD N PKRP++ FFVFME+FR TYKE+ P  
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKN 60

Query: 83  KAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMPTESQ 142
           K+   VGK GGEKWKS+SD+EKAPY  KA KRK EYE  ++AY   L   +  +   ES 
Sbjct: 61  KSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLE--EGPKEDEESD 120

Query: 143 KSTSEVNDDTEQEASS 159
           KS SEVND+ + E  S
Sbjct: 121 KSVSEVNDEDDAEDGS 134

[Close]
BLAST of Cucsat.G4847 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 114.4 bits (285), Expect = 8.5e-26
Identity = 69/136 (50.74%), Postives = 84/136 (61.76%), Query Frame = 0 

Query: 23  LKGFKNSWEILQKKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDA 82
           +KG K+  E    KL   K   K  K   KD N PKRP++ FFVFME+FR TYKE+ P  
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKN 60

Query: 83  KAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMPTESQ 142
           K+   VGK GGEKWKS+SD+EKAPY  KA KRK EYE  ++AY   L   +  +   ES 
Sbjct: 61  KSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLE--EGPKEDEESD 120

Query: 143 KSTSEVNDDTEQEASS 159
           KS SEVND+ + E  S
Sbjct: 121 KSVSEVNDEDDAEDGS 134

[Close]
BLAST of Cucsat.G4847 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 111.7 bits (278), Expect = 5.5e-25
Identity = 63/116 (54.31%), Postives = 77/116 (66.38%), Query Frame = 0 

Query: 38  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWK 97
           K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWK
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 98  SMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMPTESQKSTSEVNDDTE 154
           SMS AEKAPY EKA KRKAEYE  ++AY  NL          ES+KS SE+ND+ E
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL-----EEGSDESEKSRSEINDEDE 144

[Close]
BLAST of Cucsat.G4847 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 111.7 bits (278), Expect = 5.5e-25
Identity = 63/116 (54.31%), Postives = 77/116 (66.38%), Query Frame = 0 

Query: 38  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWK 97
           K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWK
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 98  SMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMPTESQKSTSEVNDDTE 154
           SMS AEKAPY EKA KRKAEYE  ++AY  NL          ES+KS SE+ND+ E
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL-----EEGSDESEKSRSEINDEDE 144

[Close]
BLAST of Cucsat.G4847 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 111.7 bits (278), Expect = 5.5e-25
Identity = 63/116 (54.31%), Postives = 77/116 (66.38%), Query Frame = 0 

Query: 38  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWK 97
           K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWK
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 98  SMSDAEKAPYAEKALKRKAEYEIALEAYKNNLNCPQNHRMPTESQKSTSEVNDDTE 154
           SMS AEKAPY EKA KRKAEYE  ++AY  NL          ES+KS SE+ND+ E
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL-----EEGSDESEKSRSEINDEDE 144

The following BLAST results are available for this feature:
BLAST of Cucsat.G4847 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P930471.2e-2450.74High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV... [more]
O495957.8e-2454.31High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV... [more]
P406193.9e-2353.28HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1[more]
O495965.6e-2247.48High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV... [more]
P265851.5e-1948.82HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1[more]
BLAST of Cucsat.G4847 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031737208.16.05e-77100.00high mobility group B protein 3-like isoform X2 [Cucumis sativus][more]
XP_008455870.11.05e-6488.37PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo][more]
XP_008455869.11.07e-6183.21PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo][more]
TYK24219.11.73e-6087.60high mobility group B protein 1-like isoform X2 [Cucumis melo var. makuwa][more]
XP_038902242.16.07e-6083.21high mobility group B protein 1-like [Benincasa hispida][more]
BLAST of Cucsat.G4847 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C2L95.11e-6588.37high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3C1W55.16e-6283.21HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1[more]
A0A5D3DLQ98.37e-6187.60High mobility group B protein 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7UHY33.43e-5781.40HMG1/2-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A6J1CIL22.48e-5679.84high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011... [more]
BLAST of Cucsat.G4847 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G20696.18.5e-2650.74high mobility group B3 [more]
AT1G20696.38.5e-2650.74high mobility group B3 [more]
AT3G51880.15.5e-2554.31high mobility group B1 [more]
AT3G51880.25.5e-2554.31high mobility group B1 [more]
AT3G51880.35.5e-2554.31high mobility group B1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 31..51
NoneNo IPR availableCOILSCoilCoilcoord: 105..125
NoneNo IPR availablePANTHERPTHR46261:SF10HIGH MOBILITY GROUP B PROTEIN 3-LIKEcoord: 32..126
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 54..120
e-value: 1.29268E-17
score: 71.1197
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 53..124
e-value: 1.3E-22
score: 91.2
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 54..123
e-value: 2.2E-18
score: 66.4
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 54..123
score: 17.987949
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 36..129
e-value: 6.0E-23
score: 83.1
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 45..126
IPR031061High mobility group protein HMGB, plantPANTHERPTHR46261HIGH MOBILITY GROUP B PROTEIN 4-RELATEDcoord: 32..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G4847.T8Cucsat.G4847.T8mRNA
Cucsat.G4847.T3Cucsat.G4847.T3mRNA
Cucsat.G4847.T4Cucsat.G4847.T4mRNA
Cucsat.G4847.T5Cucsat.G4847.T5mRNA
Cucsat.G4847.T6Cucsat.G4847.T6mRNA
Cucsat.G4847.T7Cucsat.G4847.T7mRNA
Cucsat.G4847.T1Cucsat.G4847.T1mRNA
Cucsat.G4847.T2Cucsat.G4847.T2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006333 chromatin assembly or disassembly
cellular_component GO:0000785 chromatin
cellular_component GO:0005634 nucleus
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0030527 structural constituent of chromatin