Cucsat.G4655.T14 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G4655.T14
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Rhamnogalacturonan endolyase
Location	ctg1227: 1346142 .. 1347384 (+)
RNA-Seq Expression	Cucsat.G4655.T14
Synteny	Cucsat.G4655.T14

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAATCTCACTTATATAACTATCCTCAACTTGCCGGAAACAAGACATTACTTCTGTGAGAAAGAATTGGCTTCTCTCTCAAACAGTTAGTCGAAAGCCGCTGACATGCCGCCACTGGGTGTGCAGCTCTTTATTACAGAACGTCAGGTAAGTCCTTCCCTCCCTCTCTGCATCTCTCTCTCTGTCCACCTCTCTATTATTAAAGCGGTGAAATGTGCAGGTGACAATGGACAATGGCATAGTTCAAGTCACGTTATCAAACCCAGATGGCATAGTAACTGGAATTCGATACGGTGGAGTTGACAACGTGCTCGAAGTCCTAAACGATGAATCTAACCGAGGGTATATATTTTGAAGGAAATACTTGCCTATACACTTTATTCAGTTGATGGTTCGACGACTTTCTTATTTGGCTTATTCTTCGTTATTCAAGAACATCAGCAGGATCGATGCAATTTGAAGAATAAAAATAAGTCACGTTAGAAAGTCATTAAGAGTTCCGACTGATGATGATGGGTGTTTAGAAACGTATTATTCTACAAAGAACATCATTTCGATTTCATTAATTGTGTCCATGCATGAGTTAGAGGCTATATTACAAAAATTATGCTCCTAAACTTTCTCATTTGTTTAAAAAATACTCTTACTCTTTTAAAAGTTGTAATATTAGCCTTGACCTTTCATTTGTCTCAGAAACTAACTTTAAAGTAGAAATTCTTTGAAGCTTTTAATGGAAACTGAGATATGAAATGTGTGTGTTGCAGTGTACGAGTTATCACTGTATGCTGTGTTATGTTGTCTTTTTTGTCTAATGTGACATGTCCATTCCAATGGAAGAATGTGATATTTTTTGAAATGAATGCCAGTTTGGAGTTAAGTTTTGTAATTTAGTCTAAGTTAAATGTTTGTCGTTTGTAATTTCACTTTTCATGCAGGTATTGGGACCTCGTGTGGAGCTCATCATCGTCCACAACTGGATTGTTTGATGTGTATGTATTCGCTTCTCTGCTTTTTTTTCTTTTCAAGTTGGATTTCTTACAGATTTTCGGGCCTCTAAGCTTTTTCCTTGGTTAATACGTGTAACTTTGTTTTGTAGGATAAAGGCTACAGGTTTCGAGGTCATAGTGGAAAATGAAGAACAAGTGGAACTCTCCTTTACAAGAACATGGGATCTGTCTCTCGAGGGAAAACTTGTGCCTTTAGAGATTGATAAAAGGTGACATTGAATTCATGCAGTCTGCTAA

Coding sequence (CDS)

ATGCCGCCACTGGGTGTGCAGCTCTTTATTACAGAACGTCAGGTGACAATGGACAATGGCATAGTTCAAGTCACGTTATCAAACCCAGATGGCATAGTAACTGGAATTCGATACGGTGGAGTTGACAACGTGCTCGAAGTCCTAAACGATGAATCTAACCGAGGGTATTGGGACCTCGTGTGGAGCTCATCATCGTCCACAACTGGATTGTTTGATGTGATAAAGGCTACAGGTTTCGAGGTCATAGTGGAAAATGAAGAACAAGTGGAACTCTCCTTTACAAGAACATGGGATCTGTCTCTCGAGGGAAAACTTGTGCCTTTAGAGATTGATAAAAGGTGA

Protein sequence

MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLVWSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR

Homology

[Close]

BLAST of Cucsat.G4655.T14 vs. NCBI nr
Match: XP_004152608.2 (probable rhamnogalacturonate lyase B isoform X1 [Cucumis sativus] >KGN62737.1 hypothetical protein Csa_022438 [Cucumis sativus])

HSP 1 Score: 229 bits (585), Expect = 1.40e-69
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLV 60
           MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLV
Sbjct: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLV 60

Query: 61  WSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113
           WSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR
Sbjct: 61  WSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113

[Close]

BLAST of Cucsat.G4655.T14 vs. NCBI nr
Match: XP_008444895.1 (PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Cucumis melo])

HSP 1 Score: 223 bits (568), Expect = 4.60e-67
Identity = 109/113 (96.46%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLV 60
           MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRY GVDNVLEVLNDE+NRGYWDLV
Sbjct: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNVLEVLNDETNRGYWDLV 60

Query: 61  WSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113
           WSSSSS+TGLFDVIKATGF+VIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR
Sbjct: 61  WSSSSSSTGLFDVIKATGFKVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113

[Close]

BLAST of Cucsat.G4655.T14 vs. NCBI nr
Match: KAA0065109.1 (putative rhamnogalacturonate lyase B isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 223 bits (568), Expect = 4.60e-67
Identity = 109/113 (96.46%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLV 60
           MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRY GVDNVLEVLNDE+NRGYWDLV
Sbjct: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNVLEVLNDETNRGYWDLV 60

Query: 61  WSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113
           WSSSSS+TGLFDVIKATGF+VIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR
Sbjct: 61  WSSSSSSTGLFDVIKATGFKVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113

[Close]

BLAST of Cucsat.G4655.T14 vs. NCBI nr
Match: XP_038886212.1 (probable rhamnogalacturonate lyase B isoform X1 [Benincasa hispida])

HSP 1 Score: 221 bits (563), Expect = 2.45e-66
Identity = 107/113 (94.69%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLV 60
           MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRY GVDNVLEVLNDESNRGYWDLV
Sbjct: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNVLEVLNDESNRGYWDLV 60

Query: 61  WSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113
           W+SS+STTGLFDVIK+TGFEVIVENE+QVELSFTR+WDLSLEGKLVPLEIDKR
Sbjct: 61  WNSSASTTGLFDVIKSTGFEVIVENEDQVELSFTRSWDLSLEGKLVPLEIDKR 113

[Close]

BLAST of Cucsat.G4655.T14 vs. NCBI nr
Match: XP_023001855.1 (rhamnogalacturonate lyase B-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 205 bits (521), Expect = 3.33e-60
Identity = 100/113 (88.50%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLV 60
           MPPLGVQL I+E QVTMDNGIVQVTLSNPDGIVTGIRY GVDN+LEVLNDESNRGYWDLV
Sbjct: 1   MPPLGVQLSISEHQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLV 60

Query: 61  WSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113
           W+ S+S TG FDVIKAT FEVIVENE+QVELSFTR WDLSLEGKLVPLEIDKR
Sbjct: 61  WNPSASATGSFDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKR 113

[Close]

BLAST of Cucsat.G4655.T14 vs. ExPASy TrEMBL
Match: A0A0A0LPL0 (Rhamnogalacturonan endolyase OS=Cucumis sativus OX=3659 GN=Csa_2G370370 PE=3 SV=1)

HSP 1 Score: 229 bits (585), Expect = 6.78e-70
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLV 60
           MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLV
Sbjct: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLV 60

Query: 61  WSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113
           WSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR
Sbjct: 61  WSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113

[Close]

BLAST of Cucsat.G4655.T14 vs. ExPASy TrEMBL
Match: A0A5A7VI09 (Rhamnogalacturonan endolyase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004440 PE=3 SV=1)

HSP 1 Score: 223 bits (568), Expect = 2.23e-67
Identity = 109/113 (96.46%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLV 60
           MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRY GVDNVLEVLNDE+NRGYWDLV
Sbjct: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNVLEVLNDETNRGYWDLV 60

Query: 61  WSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113
           WSSSSS+TGLFDVIKATGF+VIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR
Sbjct: 61  WSSSSSSTGLFDVIKATGFKVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113

[Close]

BLAST of Cucsat.G4655.T14 vs. ExPASy TrEMBL
Match: A0A1S3BCA7 (Rhamnogalacturonan endolyase OS=Cucumis melo OX=3656 GN=LOC103488110 PE=3 SV=1)

HSP 1 Score: 223 bits (568), Expect = 2.23e-67
Identity = 109/113 (96.46%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLV 60
           MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRY GVDNVLEVLNDE+NRGYWDLV
Sbjct: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNVLEVLNDETNRGYWDLV 60

Query: 61  WSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113
           WSSSSS+TGLFDVIKATGF+VIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR
Sbjct: 61  WSSSSSSTGLFDVIKATGFKVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113

[Close]

BLAST of Cucsat.G4655.T14 vs. ExPASy TrEMBL
Match: A0A6J1KMB3 (Rhamnogalacturonan endolyase OS=Cucurbita maxima OX=3661 GN=LOC111495919 PE=3 SV=1)

HSP 1 Score: 205 bits (521), Expect = 1.61e-60
Identity = 100/113 (88.50%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLV 60
           MPPLGVQL I+E QVTMDNGIVQVTLSNPDGIVTGIRY GVDN+LEVLNDESNRGYWDLV
Sbjct: 1   MPPLGVQLSISEHQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLV 60

Query: 61  WSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113
           W+ S+S TG FDVIKAT FEVIVENE+QVELSFTR WDLSLEGKLVPLEIDKR
Sbjct: 61  WNPSASATGSFDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKR 113

[Close]

BLAST of Cucsat.G4655.T14 vs. ExPASy TrEMBL
Match: A0A6J1BV89 (Rhamnogalacturonan endolyase OS=Momordica charantia OX=3673 GN=LOC111005034 PE=3 SV=1)

HSP 1 Score: 205 bits (521), Expect = 4.72e-60
Identity = 98/113 (86.73%), Postives = 104/113 (92.04%), Query Frame = 0


Query: 1   MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLV 60
           MPPLGVQL++TERQV MDNGIVQVT SNPDGIV GIRY GVDN+LE+LNDE NRGYWDLV
Sbjct: 76  MPPLGVQLYVTERQVVMDNGIVQVTFSNPDGIVIGIRYNGVDNLLEILNDEYNRGYWDLV 135

Query: 61  WSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 113
           WS S+STTG FDVIKAT FEVIVENE+QVELSFTR WDLSLEGKLVPLEIDKR
Sbjct: 136 WSPSASTTGSFDVIKATSFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKR 188

[Close]

BLAST of Cucsat.G4655.T14 vs. TAIR 10
Match: AT1G09890.1 (Rhamnogalacturonate lyase family protein )

HSP 1 Score: 148.3 bits (373), Expect = 3.8e-36
Identity = 72/97 (74.23%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 17  MDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLVWSSSSSTTGLFDVIKA 76
           MDNGI +VTLS PDGIVTGI Y G+DN+LEVLN+E NRGYWDLVW   S T G FDVIK 
Sbjct: 1   MDNGIARVTLSKPDGIVTGIEYNGIDNLLEVLNEEVNRGYWDLVW-GGSGTAGGFDVIKG 60

Query: 77  TGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 114
           + FEVIV+NEEQ+ELSFTR WD S EGK VPL IDKR
Sbjct: 61  SNFEVIVKNEEQIELSFTRKWDPSQEGKAVPLNIDKR 96

[Close]

BLAST of Cucsat.G4655.T14 vs. TAIR 10
Match: AT1G09910.1 (Rhamnogalacturonate lyase family protein )

HSP 1 Score: 147.1 bits (370), Expect = 8.4e-36
Identity = 71/109 (65.14%), Postives = 81/109 (74.31%), Query Frame = 0


Query: 5   GVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLVWSSS 64
           GV L + +R V MDNGI+QVTLS P GI+TGI Y G+DNVLEV N E+NRGYWDL W+  
Sbjct: 48  GVHLHVHDRYVVMDNGILQVTLSKPGGIITGIEYNGIDNVLEVRNKETNRGYWDLHWNEP 107

Query: 65  SSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 114
               G+FDVI    F VIVE EEQVE+SF RTWD SLEGK +PL IDKR
Sbjct: 108 GG-KGIFDVISGVTFRVIVETEEQVEISFLRTWDPSLEGKYIPLNIDKR 155

[Close]

BLAST of Cucsat.G4655.T14 vs. TAIR 10
Match: AT4G24430.1 (Rhamnogalacturonate lyase family protein )

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-31
Identity = 64/110 (58.18%), Postives = 79/110 (71.82%), Query Frame = 0


Query: 6   VQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLVWSSSS 65
           VQL + E  V M NG V+VT+S PDG VTGI Y GVDN+LE  N++ NRGYWDLVWS   
Sbjct: 7   VQLDVQESHVVMGNGKVKVTISKPDGFVTGISYQGVDNLLETHNEDFNRGYWDLVWSDEG 66

Query: 66  S--TTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 114
           +  TTG  + IK T FEV+VENEE VE+SF+R WD SL+  + P+ +DKR
Sbjct: 67  TPGTTGKSERIKGTSFEVVVENEELVEISFSRKWDSSLQDSIAPINVDKR 116

[Close]

BLAST of Cucsat.G4655.T14 vs. TAIR 10
Match: AT2G22620.1 (Rhamnogalacturonate lyase family protein )

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-27
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 0


Query: 1   MPPLGVQL-FITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDL 60
           +P L VQL  +    V +DNGIVQVT SNP+G++TGI+Y G+DNVL+   D+  RGYWD+
Sbjct: 47  IPALTVQLRRVGHDTVVVDNGIVQVTFSNPEGLITGIKYHGIDNVLDDKIDD--RGYWDV 106

Query: 61  VWSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 114
           VW          D ++ T FE+I +NEEQ+E+SFTRTW +S  G LVPL +DKR
Sbjct: 107 VWYEPEKKQKT-DKLEGTKFEIITQNEEQIEISFTRTWTISRRGSLVPLNVDKR 157

[Close]

BLAST of Cucsat.G4655.T14 vs. TAIR 10
Match: AT1G09880.1 (Rhamnogalacturonate lyase family protein )

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-23
Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 17  MDNGIVQVTLSNPDGIVTGIRYGGVDNVLE-VLNDESNRGYWDLVWS----SSSSTTGLF 76
           M+N  +Q+TLSNP+G VTGI+Y G+DNVL    N E +RGYWD+VW+     +  T G  
Sbjct: 1   MENRFLQLTLSNPEGFVTGIQYNGIDNVLAYYTNKEYDRGYWDVVWNFPGKKAKKTKGTL 60

Query: 77  DVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKR 114
           D I+AT  EVI +N+E++ELSFTRTW+ S     VP+ IDKR
Sbjct: 61  DRIEATKMEVITQNDEKIELSFTRTWNTS-STTAVPVNIDKR 101

The following BLAST results are available for this feature:

BLAST of Cucsat.G4655.T14 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G4655.T14 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152608.2	1.40e-69	100.00	probable rhamnogalacturonate lyase B isoform X1 [Cucumis sativus] >KGN62737.1 hy...	[more]
XP_008444895.1	4.60e-67	96.46	PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Cucumis melo]	[more]
KAA0065109.1	4.60e-67	96.46	putative rhamnogalacturonate lyase B isoform X1 [Cucumis melo var. makuwa]	[more]
XP_038886212.1	2.45e-66	94.69	probable rhamnogalacturonate lyase B isoform X1 [Benincasa hispida]	[more]
XP_023001855.1	3.33e-60	88.50	rhamnogalacturonate lyase B-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Cucsat.G4655.T14 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPL0	6.78e-70	100.00	Rhamnogalacturonan endolyase OS=Cucumis sativus OX=3659 GN=Csa_2G370370 PE=3 SV=...	[more]
A0A5A7VI09	2.23e-67	96.46	Rhamnogalacturonan endolyase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3BCA7	2.23e-67	96.46	Rhamnogalacturonan endolyase OS=Cucumis melo OX=3656 GN=LOC103488110 PE=3 SV=1	[more]
A0A6J1KMB3	1.61e-60	88.50	Rhamnogalacturonan endolyase OS=Cucurbita maxima OX=3661 GN=LOC111495919 PE=3 SV...	[more]
A0A6J1BV89	4.72e-60	86.73	Rhamnogalacturonan endolyase OS=Momordica charantia OX=3673 GN=LOC111005034 PE=3...	[more]

BLAST of Cucsat.G4655.T14 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09890.1	3.8e-36	74.23	Rhamnogalacturonate lyase family protein	[more]
AT1G09910.1	8.4e-36	65.14	Rhamnogalacturonate lyase family protein	[more]
AT4G24430.1	2.1e-31	58.18	Rhamnogalacturonate lyase family protein	[more]
AT2G22620.1	1.9e-27	52.63	Rhamnogalacturonate lyase family protein	[more]
AT1G09880.1	1.6e-23	52.94	Rhamnogalacturonate lyase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010325	Rhamnogalacturonate lyase	PFAM	PF06045	Rhamnogal_lyase	coord: 10..113 e-value: 5.2E-43 score: 146.9
None	No IPR available	PANTHER	PTHR32018	RHAMNOGALACTURONATE LYASE FAMILY PROTEIN	coord: 1..113
None	No IPR available	PANTHER	PTHR32018:SF8	RHAMNOGALACTURONATE LYASE FAMILY PROTEIN	coord: 1..113

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G4655	Cucsat.G4655	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G4655.T14.E1	Cucsat.G4655.T14.E1	exon
Cucsat.G4655.T14.E2	Cucsat.G4655.T14.E2	exon
Cucsat.G4655.T14.E3	Cucsat.G4655.T14.E3	exon
Cucsat.G4655.T14.E4	Cucsat.G4655.T14.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G4655.T14.C1	Cucsat.G4655.T14.C1	CDS
Cucsat.G4655.T14.C2	Cucsat.G4655.T14.C2	CDS
Cucsat.G4655.T14.C3	Cucsat.G4655.T14.C3	CDS
Cucsat.G4655.T14.C4	Cucsat.G4655.T14.C4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G4655.T14	Cucsat.G4655.T14-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0102210	rhamnogalacturonan endolyase activity