Cucsat.G3673.T3 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G3673.T3
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	zinc finger CCCH domain-containing protein 62-like
Location	ctg1047: 794873 .. 798064 (+)
RNA-Seq Expression	Cucsat.G3673.T3
Synteny	Cucsat.G3673.T3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTTGGCAGACCACAAAACTTGCCCCGTCCAAAACAGCGTTGAACAGAGAGTAATAAAATTTTGATGGCATTTTCTGGGAATCTTGGAACCGATCCTTCTCTCTTTGATCTAGAAGAAATTATCGATAACAATGGAGGATCCGACGACGACTATGATTCTGATGATTTAGAATGTGATCCAAGTTACAGCATTCAGAAAAGAACCAATTCGAAGACTTCAAGGACCTCGATCAGGAAGAAATTAAAGCCATTGTAAGTATTTGAATCTATTTAACTCATTTCTCATCTTGTTCGGTGTGTTCAACTATTATACTTGATTAATCGATATAGAGCTGGAACTCATTAGGTTTTTTTTTTTTTTTTTTTTCCATTTTGCAGGGATATTGTGGATACGAACCTGATTGAGGATTCAGATATAGATGATGTAGTGCCAAATATTCCGATTATAAATGAAAAAGATGAGAAAGATACTCGTGAAGTGCTATCAATCATTAAAGGTTAGTCAAATTTTTTGAATGGTTTCTTCCTATGAACAGAGAAGGTCATTAGTAATCTGAACTCTATAAGTTTTTTTCTCCTCTTTTTCCATTTCTTGTAAACAATCGATGTGCTCATAGCCTTAGGTACTGCTGAAGTATTATGATTTTGTGTTAAGTTTAGGAATAAAAGATTATTTGACGTACGGATTTCTATTCCCCTATGAATGTATTTGTTAGTTGTGAAGAGTAAAAACTCTAAAAAGATGTTCCCCTTTTGTGTAAATGAACTCAGAAACGATAGTTTCGACATTTTTTGGCTCCTCTTCTTTCTGGATAACCCATTTCTCTCTCATTCTTTGGACCTAGCTGGTGGTAAGCTTGAGAAACTCAAGGTAGAACAATGTAAATCTTATCTAAGAAATAATGGGTTGAGGCTGAGCGGAACAAAAGATGTGCTCATTCAGCGCATCAAGGAGCATTTAGAGTAAGTTTGTGTTGTATGTATGGTTGTTTTAGAATGGTTTTGAAAGGAGTTTATTGCTAACGACACATTTCTTTTCTCTCTCATTTTTAATTGTTTACAGGATTTTAAATGGTGGAGGGGAGAAGAAATACCCGGAGTATAGCTTTATAGTGAATTGTAAAGGTATGGTCTTAGTTACATGATGAGGATATTATGACGTCGAGAAGTATGTGGCTGTTTGAACTTGTAGAACGGTTTGTTTGTTCTCATTTTAATATGTTGCTGATTTTTAAGTGCACAGTTTTTCTAATTCTTGACAATTGTCTTTTTGTGCCTAGCTATTACTCAGTTTCTTGTTATTGTAGTTCTGTTCTCGTTTTCTGATGTTTATTTGATTCAGGTGATGCCTGCATGGGTGATATTGTTATGTTTGAACAAAAAGTATATGAGATGTAAGAATTAATTCAATGTATCTTATTCTAATTTTTCTTTTTCACTAATAATTGGCCTTCTATCTCTTTCATTCCACAAGGATCAAGATTTCAATTGCAATCTTTACGTGTGATAATGATAGAGATTGTAATCTTAGAGCACTGAAATTTCTCTTCCCCAAATCTGTACCTATCTACTAGTTTTCATGTCATGGATTGTTTCTTAATAGGACATTCATCATTCAGGTACAACATCGCATCTAGGAGCTCCACAGGTCCTTCATGTGGAACAAGAACGGTTGCTGGTCGCATTGTTAAAGAAAGCTATGGTTCTTCCAAACAGCAACATACATTTACGGTGAGACGAATTTTAAAAATGAATTACGAGGAATGACCGACTTAAGATGAAGCTTGGTTCTTTTTTAGTAGTTCTCTCCTTGAATTGTGTTACCAATTCTCATAGTAATTGTTATTATAAGCCAGCCTTTCCCTTTTTTTTTTTTTTTTTTTTTTTGAGCCAGATTGAAGTATTGTGGAGTAAGGGTGAGAAACCCCTTCCTCCACTTCATCCCCTTTTAATCAAAGGTCGAAACCTTTACCGGATGAAGACTATGAGACAGGTTACAGTTACACATTTTACATTCTTCCTTCGACTTTTCTTTTAAATATACTCTTTTAACTTTTCTTTTAAATAACCCATGTTATCAAATTTTGTAGCCTTGGGAAGATGAAGATGAAAGGCAGAAAGTTCTAATGGAAAAACATGCCAGGGGATCACTTGCAAGATCAAATAGGGAAGCACGTGTAATAGAGAAAGAAAAAAGAAAAACACACAAGGAAAACAGGTATATTATAATTTTGTATCAAACCACCTTGAAATGAGACACATTCATTTTTATGCACCCATACGTGCTCAATATTTTGGTTAAGACAAGAGTTTAAAATTCTATGTTTCAGGGAACCAAGGAAAGAAGGATTTAGAAACAATCCTTCTCAGTCAAATCTATCTTCAGCAGGAACGATCTTAGCCAATTCCATGGCGAAGTTATCGGTTGAGAGAAATGTAGTTCATCAACATCAGGAAAGACCTTCGTTTGGTAATTTAAGAAAAGCAACTGATCAAACAAAATCACATTTGTTCATTGATGATCATAATAATAGACTGCCATTTCAACATCAACACATGGTGGATAATACAATAAAAAACAATTACTATAGCCAACCTCAAACGAAAGCCAATCCTCCAGCAATCTTCAATATACATCCTAGCATTTACAGGAATAATCATGCTGCTGCTTCTGTTAACAAGGTTCTTGATAATACAAACCACATATCATGGGATTATGATCATCATTCTAGACTACCAATGGATCGAATGAATCTTTATCCTAAAGTGAATCACAGTGCACAAGAAGGCTACAAGCAACAACAGTGCCGTTATTATGCTGTAGGGAAATGTTACTATAGAGAGAACTGTAAATTCTCACATGACATGACCGAAGATTTTGTACAAAGAGAGAGAGAAAGATTGGGTCATCGTTATCATATGCATCAAAATGCTCGTCATTGTCGGTAACTATATGTATAACCTTTTGGGGAGTAAGGATTATCCTCATAGAATTGTCTTTTGTATTTGAATAGTAGCGTGTTGTGTGCTACTTAGATATGTTTTACATTTTTGAATGAGTAAATCTTCCCATTTTCTTGATTTTAATCGGGTAGCTCATTTTGAATGAGTAAATGATTTTAAAGCAGTGTCTGAGTTACACACCAATAAAAATGTTGTTCTAGATTACTTGTTGTAAGGTGTAATATACC

Coding sequence (CDS)

ATGGATTGTTTCTTAATAGGACATTCATCATTCAGGTACAACATCGCATCTAGGAGCTCCACAGGTCCTTCATGTGGAACAAGAACGGTTGCTGGTCGCATTGTTAAAGAAAGCTATGGTTCTTCCAAACAGCAACATACATTTACGATTGAAGTATTGTGGAGTAAGGGTGAGAAACCCCTTCCTCCACTTCATCCCCTTTTAATCAAAGGTCGAAACCTTTACCGGATGAAGACTATGAGACAGCCTTGGGAAGATGAAGATGAAAGGCAGAAAGTTCTAATGGAAAAACATGCCAGGGGATCACTTGCAAGATCAAATAGGGAAGCACGTGTAATAGAGAAAGAAAAAAGAAAAACACACAAGGAAAACAGGGAACCAAGGAAAGAAGGATTTAGAAACAATCCTTCTCAGTCAAATCTATCTTCAGCAGGAACGATCTTAGCCAATTCCATGGCGAAGTTATCGGTTGAGAGAAATGTAGTTCATCAACATCAGGAAAGACCTTCGTTTGGTAATTTAAGAAAAGCAACTGATCAAACAAAATCACATTTGTTCATTGATGATCATAATAATAGACTGCCATTTCAACATCAACACATGGTGGATAATACAATAAAAAACAATTACTATAGCCAACCTCAAACGAAAGCCAATCCTCCAGCAATCTTCAATATACATCCTAGCATTTACAGGAATAATCATGCTGCTGCTTCTGTTAACAAGGTTCTTGATAATACAAACCACATATCATGGGATTATGATCATCATTCTAGACTACCAATGGATCGAATGAATCTTTATCCTAAAGTGAATCACAGTGCACAAGAAGGCTACAAGCAACAACAGTGCCGTTATTATGCTGTAGGGAAATGTTACTATAGAGAGAACTGTAAATTCTCACATGACATGACCGAAGATTTTGTACAAAGAGAGAGAGAAAGATTGGGTCATCGTTATCATATGCATCAAAATGCTCGTCATTGTCGGTAA

Protein sequence

MDCFLIGHSSFRYNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGFRNNPSQSNLSSAGTILANSMAKLSVERNVVHQHQERPSFGNLRKATDQTKSHLFIDDHNNRLPFQHQHMVDNTIKNNYYSQPQTKANPPAIFNIHPSIYRNNHAAASVNKVLDNTNHISWDYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFSHDMTEDFVQRERERLGHRYHMHQNARHCR

Homology

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BLAST of Cucsat.G3673.T3 vs. ExPASy Swiss-Prot
Match: Q338N2 (Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0391300 PE=4 SV=2)

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-33
Identity = 86/190 (45.26%), Postives = 115/190 (60.53%), Query Frame = 0


Query: 16  ASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLY 75
           A R   G  CG RT AGRI+KESYG+ KQQHTFTIE+LWS+G KP PPLHPLLIKGRNLY
Sbjct: 208 APRGVKGHLCGQRTNAGRIIKESYGTKKQQHTFTIEILWSRGYKPWPPLHPLLIKGRNLY 267

Query: 76  RMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRK-----THKENREPRKE 135
           + KTMRQPW DE+ER + L EKHARG +AR  RE R+ +KE  +      +KEN+   ++
Sbjct: 268 KDKTMRQPWLDEEERNRALQEKHARGYVARKTREVRIKDKENERMRRLNRNKENKSKGQD 327

Query: 136 GFRNNPSQSNLSSAGTILANSMAKLSVERNVVHQHQERPSFGNLRKATDQTKSHLFIDDH 195
                 SQ+ +    T+  N++ K + +     QH E  +      ++ QT +   +  +
Sbjct: 328 NMNKKSSQA-VFPQHTVTTNTVQKRAEKIIPSLQHGESGNSSQQHLSSKQTPTEQLL-HY 387

Query: 196 NNRLPFQHQH 201
             + P   QH
Sbjct: 388 LPQFPHPQQH 395

[Close]

BLAST of Cucsat.G3673.T3 vs. NCBI nr
Match: XP_031744267.1 (zinc finger CCCH domain-containing protein 62 isoform X2 [Cucumis sativus])

HSP 1 Score: 644 bits (1660), Expect = 6.18e-230
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 0


Query: 13  YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 72
           YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR
Sbjct: 180 YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 239

Query: 73  NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF 132
           NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF
Sbjct: 240 NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF 299

Query: 133 RNNPSQSNLSSAGTILANSMAKLSVERNVVHQHQERPSFGNLRKATDQTKSHLFIDDHNN 192
           RNNPSQSNLSSAGTILANSMAKLSVERNVVHQHQERPSFGNLRKATDQTKSHLFIDDHNN
Sbjct: 300 RNNPSQSNLSSAGTILANSMAKLSVERNVVHQHQERPSFGNLRKATDQTKSHLFIDDHNN 359

Query: 193 RLPFQHQHMVDNTIKNNYYSQPQTKANPPAIFNIHPSIYRNNHAAASVNKVLDNTNHISW 252
           RLPFQHQHMVDNTIKNNYYSQPQTKANPPAIFNIHPSIYRNNHAAASVNKVLDNTNHISW
Sbjct: 360 RLPFQHQHMVDNTIKNNYYSQPQTKANPPAIFNIHPSIYRNNHAAASVNKVLDNTNHISW 419

Query: 253 DYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFSHDMTEDFVQRE 312
           DYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFSHDMTEDFVQRE
Sbjct: 420 DYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFSHDMTEDFVQRE 479

Query: 313 RERLGHRYHMHQNARHCR 330
           RERLGHRYHMHQNARHCR
Sbjct: 480 RERLGHRYHMHQNARHCR 497

[Close]

BLAST of Cucsat.G3673.T3 vs. NCBI nr
Match: XP_004141817.1 (zinc finger CCCH domain-containing protein 62 isoform X1 [Cucumis sativus] >KGN45466.1 hypothetical protein Csa_016559 [Cucumis sativus])

HSP 1 Score: 644 bits (1660), Expect = 6.40e-230
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 0


Query: 13  YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 72
           YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR
Sbjct: 181 YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 240

Query: 73  NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF 132
           NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF
Sbjct: 241 NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF 300

Query: 133 RNNPSQSNLSSAGTILANSMAKLSVERNVVHQHQERPSFGNLRKATDQTKSHLFIDDHNN 192
           RNNPSQSNLSSAGTILANSMAKLSVERNVVHQHQERPSFGNLRKATDQTKSHLFIDDHNN
Sbjct: 301 RNNPSQSNLSSAGTILANSMAKLSVERNVVHQHQERPSFGNLRKATDQTKSHLFIDDHNN 360

Query: 193 RLPFQHQHMVDNTIKNNYYSQPQTKANPPAIFNIHPSIYRNNHAAASVNKVLDNTNHISW 252
           RLPFQHQHMVDNTIKNNYYSQPQTKANPPAIFNIHPSIYRNNHAAASVNKVLDNTNHISW
Sbjct: 361 RLPFQHQHMVDNTIKNNYYSQPQTKANPPAIFNIHPSIYRNNHAAASVNKVLDNTNHISW 420

Query: 253 DYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFSHDMTEDFVQRE 312
           DYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFSHDMTEDFVQRE
Sbjct: 421 DYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFSHDMTEDFVQRE 480

Query: 313 RERLGHRYHMHQNARHCR 330
           RERLGHRYHMHQNARHCR
Sbjct: 481 RERLGHRYHMHQNARHCR 498

[Close]

BLAST of Cucsat.G3673.T3 vs. NCBI nr
Match: XP_008462271.1 (PREDICTED: zinc finger CCCH domain-containing protein 62-like [Cucumis melo] >KAA0059379.1 zinc finger CCCH domain-containing protein 62-like [Cucumis melo var. makuwa] >TYK03947.1 zinc finger CCCH domain-containing protein 62-like [Cucumis melo var. makuwa])

HSP 1 Score: 537 bits (1383), Expect = 8.59e-188
Identity = 278/329 (84.50%), Postives = 292/329 (88.75%), Query Frame = 0


Query: 13  YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 72
           YNIASRSS GPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR
Sbjct: 180 YNIASRSSKGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 239

Query: 73  NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF 132
           NLYRMKTMRQ WEDE ERQKVL EKHARGSLARSNREARVIEKEKRKTHKENRE RKEG+
Sbjct: 240 NLYRMKTMRQTWEDERERQKVLKEKHARGSLARSNREARVIEKEKRKTHKENRESRKEGY 299

Query: 133 RNNPSQSNLSSAGTILANSMAKLSVE-RNVVHQHQERPSFGNLRKATDQTKSHLFIDDH- 192
           RNNPS+SNLSSAGT+LA SMAKL+V+ RNVVHQHQERPSFGNL KATDQTKSH+FID + 
Sbjct: 300 RNNPSRSNLSSAGTMLAESMAKLTVDSRNVVHQHQERPSFGNLGKATDQTKSHMFIDQNR 359

Query: 193 ---------NNRLPFQHQHMVDNTIKNNYYSQPQTKANPPAIFNIHPSIYRNNHAAASVN 252
                    +NRLPFQHQHMVDNT++NNYYSQPQTKANPPA FNI PSIYR N AA+SVN
Sbjct: 360 LPSQHQHMMDNRLPFQHQHMVDNTMQNNYYSQPQTKANPPASFNIQPSIYRTNPAASSVN 419

Query: 253 KVLDNTNHISWDYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFS 312
           KVLDN NHI          PMDRMNLYPKVNHSAQEGY Q QCRY+AVGKCYYRE+CKFS
Sbjct: 420 KVLDNRNHI----------PMDRMNLYPKVNHSAQEGYNQPQCRYFAVGKCYYRESCKFS 479

Query: 313 HDMTEDFVQRERERLGHRYHMHQNARHCR 330
           HDMTEDFVQRE+ERLGH YHMHQNARHCR
Sbjct: 480 HDMTEDFVQREKERLGHYYHMHQNARHCR 498

[Close]

BLAST of Cucsat.G3673.T3 vs. NCBI nr
Match: XP_038899462.1 (zinc finger CCCH domain-containing protein 62-like [Benincasa hispida])

HSP 1 Score: 453 bits (1165), Expect = 9.61e-155
Identity = 247/329 (75.08%), Postives = 272/329 (82.67%), Query Frame = 0


Query: 13  YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 72
           YNIASRSS GPS GTRTV GRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR
Sbjct: 180 YNIASRSSIGPSRGTRTVVGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 239

Query: 73  NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF 132
           NLYR+KT RQ WEDE ERQKVLMEKHARGSLARSNRE RV+E+EKRKTHKENR+ R EGF
Sbjct: 240 NLYRIKTFRQTWEDEGERQKVLMEKHARGSLARSNRETRVVEREKRKTHKENRKSRNEGF 299

Query: 133 RNNPSQSNLSSAGTILANSMAKLSVE-RNVVHQHQERPSFGNLRKA---------TDQTK 192
           ++NPSQSNLSSAGT L  SM KLSV+ R VVHQHQE   FGN  KA         ++QTK
Sbjct: 300 KDNPSQSNLSSAGTTLVQSMEKLSVDSRKVVHQHQEEQLFGNSGKAFQHQQPENPSNQTK 359

Query: 193 SHLFIDDHNNRLPFQHQHMVDNTIKNNYYSQPQTKANPPAIFNI-HPSIYRNNHAAASVN 252
           S LFID  +NRLPFQHQ        NNYYSQPQ KAN  A ++I  P IY+ +HAA SVN
Sbjct: 360 SDLFID--HNRLPFQHQ--------NNYYSQPQMKANHSACYSIMQPIIYKADHAA-SVN 419

Query: 253 KVLDNTNHISWDYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFS 312
           +VLDNTN  SWDY H+SRLPM RMNLYP+VN +AQEGYKQQQCR+YAVG+CYY ENCKFS
Sbjct: 420 EVLDNTNRSSWDY-HYSRLPMGRMNLYPRVNQTAQEGYKQQQCRHYAVGRCYYGENCKFS 479

Query: 313 HDMTEDFVQRERERLGHRYHMHQNARHCR 330
           H+MT DFV+RE+ERLGH +H+HQNARHCR
Sbjct: 480 HEMTRDFVRREKERLGH-HHIHQNARHCR 495

[Close]

BLAST of Cucsat.G3673.T3 vs. NCBI nr
Match: KAG7013969.1 (Zinc finger CCCH domain-containing protein 62, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 412 bits (1060), Expect = 4.49e-139
Identity = 227/332 (68.37%), Postives = 254/332 (76.51%), Query Frame = 0


Query: 13  YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 72
           YNIASRSS GPSCGTR VAGRIVKESYG+SKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR
Sbjct: 170 YNIASRSSIGPSCGTRIVAGRIVKESYGASKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 229

Query: 73  NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF 132
           NLYRMKTMRQ WEDE ERQKVLMEKHARGSLARS REARV+EKEKRKTH ENR+ R+EGF
Sbjct: 230 NLYRMKTMRQTWEDEGERQKVLMEKHARGSLARSTREARVVEKEKRKTHNENRKSRREGF 289

Query: 133 RNNPSQSNLSSAGTILANSMAKLSVE-RNVVHQHQERPSFGNL------RKATDQTKSHL 192
             NPSQSNLSSAGT+LA +M KLSV+ R  VH HQERP FGN          T QTKS +
Sbjct: 290 SENPSQSNLSSAGTMLAETMVKLSVDARKAVHPHQERPLFGNSGEPPRQHNPTKQTKSDV 349

Query: 193 FIDDHNNRLPFQHQHMVDNTIKNNYYSQPQTKANPPAI-FNIHPSIYRNNHAAASVNKVL 252
           FID  ++R P+Q Q MV N ++NNY+SQPQ K +PP + +N+HPSIYR +H A       
Sbjct: 350 FID--HSRRPYQLQPMV-NPVQNNYFSQPQMKPDPPPVSYNVHPSIYRADHPA------- 409

Query: 253 DNTNHISWDYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFSHDM 312
                        SRL M +MNLYPKVN  AQE YKQQ+CRYYAVG+C+Y ENCKFSH+M
Sbjct: 410 -------------SRLAMGQMNLYPKVNQHAQESYKQQRCRYYAVGRCHYGENCKFSHEM 469

Query: 313 TEDFVQRERERLGHRYH------MHQNARHCR 330
           T+DF  RE+ERLG  +H      MHQNAR CR
Sbjct: 470 TQDFAGREKERLGRHHHHHHHHQMHQNARLCR 478

[Close]

BLAST of Cucsat.G3673.T3 vs. ExPASy TrEMBL
Match: A0A0A0KCF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448770 PE=4 SV=1)

HSP 1 Score: 644 bits (1660), Expect = 3.10e-230
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 0


Query: 13  YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 72
           YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR
Sbjct: 181 YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 240

Query: 73  NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF 132
           NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF
Sbjct: 241 NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF 300

Query: 133 RNNPSQSNLSSAGTILANSMAKLSVERNVVHQHQERPSFGNLRKATDQTKSHLFIDDHNN 192
           RNNPSQSNLSSAGTILANSMAKLSVERNVVHQHQERPSFGNLRKATDQTKSHLFIDDHNN
Sbjct: 301 RNNPSQSNLSSAGTILANSMAKLSVERNVVHQHQERPSFGNLRKATDQTKSHLFIDDHNN 360

Query: 193 RLPFQHQHMVDNTIKNNYYSQPQTKANPPAIFNIHPSIYRNNHAAASVNKVLDNTNHISW 252
           RLPFQHQHMVDNTIKNNYYSQPQTKANPPAIFNIHPSIYRNNHAAASVNKVLDNTNHISW
Sbjct: 361 RLPFQHQHMVDNTIKNNYYSQPQTKANPPAIFNIHPSIYRNNHAAASVNKVLDNTNHISW 420

Query: 253 DYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFSHDMTEDFVQRE 312
           DYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFSHDMTEDFVQRE
Sbjct: 421 DYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFSHDMTEDFVQRE 480

Query: 313 RERLGHRYHMHQNARHCR 330
           RERLGHRYHMHQNARHCR
Sbjct: 481 RERLGHRYHMHQNARHCR 498

[Close]

BLAST of Cucsat.G3673.T3 vs. ExPASy TrEMBL
Match: A0A5A7V0Q9 (Zinc finger CCCH domain-containing protein 62-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001440 PE=4 SV=1)

HSP 1 Score: 537 bits (1383), Expect = 4.16e-188
Identity = 278/329 (84.50%), Postives = 292/329 (88.75%), Query Frame = 0


Query: 13  YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 72
           YNIASRSS GPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR
Sbjct: 180 YNIASRSSKGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 239

Query: 73  NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF 132
           NLYRMKTMRQ WEDE ERQKVL EKHARGSLARSNREARVIEKEKRKTHKENRE RKEG+
Sbjct: 240 NLYRMKTMRQTWEDERERQKVLKEKHARGSLARSNREARVIEKEKRKTHKENRESRKEGY 299

Query: 133 RNNPSQSNLSSAGTILANSMAKLSVE-RNVVHQHQERPSFGNLRKATDQTKSHLFIDDH- 192
           RNNPS+SNLSSAGT+LA SMAKL+V+ RNVVHQHQERPSFGNL KATDQTKSH+FID + 
Sbjct: 300 RNNPSRSNLSSAGTMLAESMAKLTVDSRNVVHQHQERPSFGNLGKATDQTKSHMFIDQNR 359

Query: 193 ---------NNRLPFQHQHMVDNTIKNNYYSQPQTKANPPAIFNIHPSIYRNNHAAASVN 252
                    +NRLPFQHQHMVDNT++NNYYSQPQTKANPPA FNI PSIYR N AA+SVN
Sbjct: 360 LPSQHQHMMDNRLPFQHQHMVDNTMQNNYYSQPQTKANPPASFNIQPSIYRTNPAASSVN 419

Query: 253 KVLDNTNHISWDYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFS 312
           KVLDN NHI          PMDRMNLYPKVNHSAQEGY Q QCRY+AVGKCYYRE+CKFS
Sbjct: 420 KVLDNRNHI----------PMDRMNLYPKVNHSAQEGYNQPQCRYFAVGKCYYRESCKFS 479

Query: 313 HDMTEDFVQRERERLGHRYHMHQNARHCR 330
           HDMTEDFVQRE+ERLGH YHMHQNARHCR
Sbjct: 480 HDMTEDFVQREKERLGHYYHMHQNARHCR 498

[Close]

BLAST of Cucsat.G3673.T3 vs. ExPASy TrEMBL
Match: A0A1S3CH36 (zinc finger CCCH domain-containing protein 62-like OS=Cucumis melo OX=3656 GN=LOC103500669 PE=4 SV=1)

HSP 1 Score: 537 bits (1383), Expect = 4.16e-188
Identity = 278/329 (84.50%), Postives = 292/329 (88.75%), Query Frame = 0


Query: 13  YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 72
           YNIASRSS GPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR
Sbjct: 180 YNIASRSSKGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 239

Query: 73  NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF 132
           NLYRMKTMRQ WEDE ERQKVL EKHARGSLARSNREARVIEKEKRKTHKENRE RKEG+
Sbjct: 240 NLYRMKTMRQTWEDERERQKVLKEKHARGSLARSNREARVIEKEKRKTHKENRESRKEGY 299

Query: 133 RNNPSQSNLSSAGTILANSMAKLSVE-RNVVHQHQERPSFGNLRKATDQTKSHLFIDDH- 192
           RNNPS+SNLSSAGT+LA SMAKL+V+ RNVVHQHQERPSFGNL KATDQTKSH+FID + 
Sbjct: 300 RNNPSRSNLSSAGTMLAESMAKLTVDSRNVVHQHQERPSFGNLGKATDQTKSHMFIDQNR 359

Query: 193 ---------NNRLPFQHQHMVDNTIKNNYYSQPQTKANPPAIFNIHPSIYRNNHAAASVN 252
                    +NRLPFQHQHMVDNT++NNYYSQPQTKANPPA FNI PSIYR N AA+SVN
Sbjct: 360 LPSQHQHMMDNRLPFQHQHMVDNTMQNNYYSQPQTKANPPASFNIQPSIYRTNPAASSVN 419

Query: 253 KVLDNTNHISWDYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFS 312
           KVLDN NHI          PMDRMNLYPKVNHSAQEGY Q QCRY+AVGKCYYRE+CKFS
Sbjct: 420 KVLDNRNHI----------PMDRMNLYPKVNHSAQEGYNQPQCRYFAVGKCYYRESCKFS 479

Query: 313 HDMTEDFVQRERERLGHRYHMHQNARHCR 330
           HDMTEDFVQRE+ERLGH YHMHQNARHCR
Sbjct: 480 HDMTEDFVQREKERLGHYYHMHQNARHCR 498

[Close]

BLAST of Cucsat.G3673.T3 vs. ExPASy TrEMBL
Match: A0A6J1GQF0 (zinc finger CCCH domain-containing protein 62-like OS=Cucurbita moschata OX=3662 GN=LOC111456567 PE=4 SV=1)

HSP 1 Score: 412 bits (1059), Expect = 3.99e-139
Identity = 227/330 (68.79%), Postives = 255/330 (77.27%), Query Frame = 0


Query: 13  YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 72
           YNIASRSS GPSCGTR VAGRIVKESYG+SKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR
Sbjct: 180 YNIASRSSIGPSCGTRIVAGRIVKESYGASKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 239

Query: 73  NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF 132
           NLYRMKTMRQ WEDE ERQKVLMEKHARGSLARS REARV+EKEKRKTH ENR+ R+EGF
Sbjct: 240 NLYRMKTMRQTWEDEGERQKVLMEKHARGSLARSTREARVVEKEKRKTHNENRKSRREGF 299

Query: 133 RNNPSQSNLSSAGTILANSMAKLSVE-RNVVHQHQERPSFGNL------RKATDQTKSHL 192
             NPSQSNLSSAGT+LA +M KLSV+ R  VH HQERP FGN          T QTKS +
Sbjct: 300 SENPSQSNLSSAGTMLAETMVKLSVDARKAVHPHQERPLFGNSGEPPRQHNPTKQTKSDV 359

Query: 193 FIDDHNNRLPFQHQHMVDNTIKNNYYSQPQTKANPPAI-FNIHPSIYRNNHAAASVNKVL 252
           FID  ++R P+Q Q M+ N ++NNY+SQPQ KA+PP + +NIHPSIYR ++ A       
Sbjct: 360 FID--HSRRPYQLQPMM-NPVQNNYFSQPQMKADPPPVSYNIHPSIYRADYPA------- 419

Query: 253 DNTNHISWDYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFSHDM 312
                        SRL M +MNLYPKVN  AQE YKQQ+CRYYAVG+C+Y ENCKFSH+M
Sbjct: 420 -------------SRLAMGQMNLYPKVNQHAQESYKQQRCRYYAVGRCHYGENCKFSHEM 479

Query: 313 TEDFVQRERERLGHRYH----MHQNARHCR 330
           T+DF  RE+ERLG  +H    MHQNAR CR
Sbjct: 480 TQDFAGREKERLGRHHHHHHQMHQNARLCR 486

[Close]

BLAST of Cucsat.G3673.T3 vs. ExPASy TrEMBL
Match: A0A6J1JT10 (zinc finger CCCH domain-containing protein 62-like OS=Cucurbita maxima OX=3661 GN=LOC111488621 PE=4 SV=1)

HSP 1 Score: 406 bits (1044), Expect = 6.77e-137
Identity = 223/329 (67.78%), Postives = 253/329 (76.90%), Query Frame = 0


Query: 13  YNIASRSSTGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 72
           YNIASRSS GPSCGTR VAGRIVKESYG+SKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR
Sbjct: 178 YNIASRSSIGPSCGTRIVAGRIVKESYGASKQQHTFTIEVLWSKGEKPLPPLHPLLIKGR 237

Query: 73  NLYRMKTMRQPWEDEDERQKVLMEKHARGSLARSNREARVIEKEKRKTHKENREPRKEGF 132
           NLYRMKT+RQ WEDE ERQKVLMEKHARGSLARS REARV+EKEKRKTH ENR+ R+EGF
Sbjct: 238 NLYRMKTLRQTWEDEGERQKVLMEKHARGSLARSTREARVVEKEKRKTHNENRKSRREGF 297

Query: 133 RNNPSQSNLSSAGTILANSMAKLSVE-RNVVHQHQERPSFGNL-----RKATDQTKSHLF 192
             NPS+SNLSSAGT+LA +M KLSV+ R  VH HQE+P FG+         T QTKS +F
Sbjct: 298 NENPSKSNLSSAGTMLAETMVKLSVDARKAVHPHQEKPLFGHSGEPRQHNPTKQTKSDVF 357

Query: 193 IDDHNNRLPFQHQHMVDNTIKNNYYSQPQTKANPPAI-FNIHPSIYRNNHAAASVNKVLD 252
           ID  ++R P+Q Q MV N ++NNY+SQPQ KA+PP + +NIHPSIY  +H A        
Sbjct: 358 ID--HSRRPYQLQPMV-NPVQNNYFSQPQMKADPPPVSYNIHPSIYSADHPA-------- 417

Query: 253 NTNHISWDYDHHSRLPMDRMNLYPKVNHSAQEGYKQQQCRYYAVGKCYYRENCKFSHDMT 312
                       SRL M +MNLYPKVN  AQE YKQQ+CRYYAVG+C+Y ENCKFSH+M 
Sbjct: 418 ------------SRLAMGQMNLYPKVNQHAQESYKQQRCRYYAVGRCHYGENCKFSHEMA 477

Query: 313 EDFVQRERERLGHRYH----MHQNARHCR 330
           +DF  RE+ERLG  +H    MHQNAR CR
Sbjct: 478 QDFAGREKERLGRHHHHHHQMHQNARLCR 483

[Close]

BLAST of Cucsat.G3673.T3 vs. TAIR 10
Match: AT5G66840.1 (SAP domain-containing protein )

HSP 1 Score: 119.4 bits (298), Expect = 5.5e-27
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 21  TGPSCGTRTVAGRIVKESYGSSKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRMKTM 80
           +G   G RTVAG++VKESYG++KQQHTFTIEVLW +G + LPPL+PLL+KGRNLYR+ T+
Sbjct: 170 SGNIMGRRTVAGQVVKESYGTAKQQHTFTIEVLWCEGTQKLPPLYPLLVKGRNLYRLMTL 229

Query: 81  RQPWEDEDERQKVLMEKHARGSLARSNREARVIE 115
           RQ W +E++R KVL EKH RG+ AR     R I+
Sbjct: 230 RQRWPNEEDRVKVLNEKHNRGAAARKVMRERKIK 263

The following BLAST results are available for this feature:

BLAST of Cucsat.G3673.T3 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q338N2	2.2e-33	45.26	Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Cucsat.G3673.T3 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744267.1	6.18e-230	100.00	zinc finger CCCH domain-containing protein 62 isoform X2 [Cucumis sativus]	[more]
XP_004141817.1	6.40e-230	100.00	zinc finger CCCH domain-containing protein 62 isoform X1 [Cucumis sativus] >KGN4...	[more]
XP_008462271.1	8.59e-188	84.50	PREDICTED: zinc finger CCCH domain-containing protein 62-like [Cucumis melo] >KA...	[more]
XP_038899462.1	9.61e-155	75.08	zinc finger CCCH domain-containing protein 62-like [Benincasa hispida]	[more]
KAG7013969.1	4.49e-139	68.37	Zinc finger CCCH domain-containing protein 62, partial [Cucurbita argyrosperma s...	[more]

BLAST of Cucsat.G3673.T3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCF3	3.10e-230	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448770 PE=4 SV=1	[more]
A0A5A7V0Q9	4.16e-188	84.50	Zinc finger CCCH domain-containing protein 62-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3CH36	4.16e-188	84.50	zinc finger CCCH domain-containing protein 62-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1GQF0	3.99e-139	68.79	zinc finger CCCH domain-containing protein 62-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1JT10	6.77e-137	67.78	zinc finger CCCH domain-containing protein 62-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of Cucsat.G3673.T3 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66840.1	5.5e-27	61.70	SAP domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 103..123
None	No IPR available	GENE3D	2.30.30.1190		coord: 236..313 e-value: 2.2E-6 score: 29.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..143
None	No IPR available	PANTHER	PTHR35323	SAP DOMAIN-CONTAINING PROTEIN	coord: 13..283 coord: 280..313
None	No IPR available	PANTHER	PTHR35323:SF4	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE	coord: 13..283 coord: 280..313
IPR041367	E3 ligase, CCCH-type zinc finger	PFAM	PF18044	zf-CCCH_4	coord: 283..303 e-value: 1.1E-6 score: 28.3
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 278..305 score: 13.948072
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 278..306

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G3673	Cucsat.G3673	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G3673.T3.E1	Cucsat.G3673.T3.E1	exon
Cucsat.G3673.T3.E2	Cucsat.G3673.T3.E2	exon
Cucsat.G3673.T3.E3	Cucsat.G3673.T3.E3	exon
Cucsat.G3673.T3.E4	Cucsat.G3673.T3.E4	exon
Cucsat.G3673.T3.E5	Cucsat.G3673.T3.E5	exon
Cucsat.G3673.T3.E6	Cucsat.G3673.T3.E6	exon
Cucsat.G3673.T3.E7	Cucsat.G3673.T3.E7	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G3673.T3.C1	Cucsat.G3673.T3.C1	CDS
Cucsat.G3673.T3.C2	Cucsat.G3673.T3.C2	CDS
Cucsat.G3673.T3.C3	Cucsat.G3673.T3.C3	CDS
Cucsat.G3673.T3.C4	Cucsat.G3673.T3.C4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G3673.T3	Cucsat.G3673.T3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003677	DNA binding