Cucsat.G2634.T4 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G2634.T4
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	RNA-directed DNA methylation 4-like isoform X1
Location	ctg1006: 495995 .. 501615 (+)
RNA-Seq Expression	Cucsat.G2634.T4
Synteny	Cucsat.G2634.T4

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAGGAGACCTCCGTAGTGTTAAGTCGGAGGACATTGTTATTACTCTTCTTCTTTCCTTTTTAATAAGAAAAAAAGGAGAGAAAATAAGAGAAAAGGGTAACCACGCACGCTGCCCTCTCCATTGGACTTTCGAAGTTTCTCTTCCGCTCACAATCTCTCCTTCACGCCGACAACCCTCCTCCGACGCCGGACGACGACCAGCGCGCCACGCCAGCGACCCTCAACTTTTAAATATCCTTTGCCGTCAGTCTAGGTCGGGGCTGTCCTGTGTCATTCCGTCCGTGGTCGTTGAGCCGGGCCAGCTTTGAGACGCGTCGTGTTGCTTTCTGCCTGTAGATCGTCGTAATTTGAGGTCAGTTTTGCACGTTGGGAGTTGATTCTCCGAAATCTTTCCACTATTCCACTATGGATCATAAGTATATTACCAGCTTTCAATTTGAATGCTATTCAATGTTTAATTCCAAGACTTAAAGTTAAAGTTTACTTGGAGATATTTTGTCATTCTGTCTAATTATTGCTAAAGCTTGTCCAAATAATTTATCTTGAATGTCCAAGGAAGCAGCCATACAATTATGTATACAACCCATTGAAAATTTCATCAACCTTAATAGAATTTTGGGTTTAGATAATATTCCACTGCATGCAAAGGGCGATGCAACTGAAGCTCCCATCATTGTAAATTAGTTTTGTACTTTTCTTCCTTACCATCAAAGGATTTAGCGATGGTCTCATTAGCTCTATCCATAACCTCATAAATGGTCGAGCTTCTTCTTATGTTTTGAGTTTAGAAAGATATTTGTTCTTCCTTGAAAGAGAGGATAACAGGAGAGGGATTTCGATATTGTATCAAGGAATTCATTCCTATACTATCATCAATAATATTAGTAGAAATTACATACAATAGTTGGCTTCCATCATAATGTCATGCAAGTTGTAGTAAAGCGATTCTTCACTGGTCTAACTAATTCCTTTTGATTAGTAAACCGCCTCATCATGTTTAACAATCCTAGACTAACATAAATGAAACTGCTAACATACATGCCTCTTTTTAATGTTTTGCAAATATGTGGGATCTTGTATATATCCTCCAACATCAAATCACTGAGGGCACATGGAGACCAAATTAATTTTGATCATTTTGCTTCTAACAATTGCCTTATAAACAAAGTAAAATAAGAACAATATTTAGGCTTCTTAGTTGTGTAAGCATAAGACTAATAAATTTAATAAAGTGTTGGTACTTTGCATTATTTCTTACCTGCCATAACATTTGCTGAAGCACTATGAATAAAAACTTGTTCGACATTAACTTTTCCGATGCAATAGCAACTTGTTTGAAATTAACTTTTCCGATGCAATAGCAACTTGTTTGACATTAGCTTTTCCAATGCGCTCTATGAAATTGTCAAGCGACTCGAACATTTTCTTTCCATCCTTCACATAAGATGAAGCAATGAATACGGTGCCTTAGGACTATTATCTAAAAAGTTAATCAATGTCCTATGTCTTCTATTTGTCCATCCATCAGCCATAACGGTGTGTCCAACCTTTGCCGACTTTGCCTTATGGCTCTTCATCAACTCATTTGCAGATTCCAATTCCTTTTTCAAACACGACACTCTCAATTCATGATACGATGGTGGTTTCAGTCCAGGACCAAATTGTCCTATTGCCTCAATCATAGGGGCAAAGCTATCATAAGTGCAAGTGTGTGGTGTTTGGCCATTTTTTATTACTACCTTTTTGCTTGAAATCATTGAACTTCTACATTCACATCATTATAACAGTGTCTTCCATAGTTCCCTATTCCATCCTTGTTTCTTTGTGTTGTTTGCGTTTTGTTGCAGCTCATTCGTTAGGATGAATTCCCAATGCATACCTTCCTGTTAATGTTTCGTTTTAGGTTGAACTATGCTTTTAGGTTTTTATTTTTATCGTTGGTTGCTTTTGTTTTGATGCCACTGTTGGCACTTTTATATCTCTAAATGGAAGTCTTCAGTTTTGAAGAAAGCAAGAAGAGAGAGAAAAAAAAGAGCTTGTAGATTTGGTAAAAAAAGCAGTCTTCATAGTGTGTAGAAAAGTTACTTATTGTTTCCTCATTTAAGATGTTGCTCACGAAGGTTATAAATATGTATTGTACTTACTCATGGTGTTTGTTGCTGTCTTCTGTGTTTGAATGCAGGTTCTTTCTTCATCATTGCTTGCCCTAACCACATTAATTGATGCCATAGTGAGGGTCGGTCTGAACGATCAGGGACTGGAAAAAGCAGTGGTGAAACAAGGTGTGCTTCCAATTCTAGGGAGACCGTTGAAGCCTAAAAGTATTCAGTCTTAAGGGGTCTTGCCAAAAATATTCCTCATGCTTTTAGAGAATAGAACATAAAACTATTGCCCGTCGTATGGCGCTCATTGGTGAGAGCTCTTCTTCTGTTTCCAAACTCGTGGACGAAAAGCCAGTTTTAGTTAGGGTTAAGCGCAAAGCTTCCCAATCTCGACTTGATGCATTATGTGAGTTCTGTTTAGACACTCTCTTTCATTCCCTTCCTCAAAGAATTTCTTTTGCTAATTTAGGTTTGTGATTTGCATAGTTCAGCTCTTTTAACTCTTGGAGATCACATTCTTCTATTGTCTTCTTATTAGCCATCTCCTTCGATGTTTAATTATTTATGAGCCATCGAATGAAGTCTGAATTGTTCCATGTTTGCATTGACCTTTGTGATGATTTTCAGCCTATTGTTATGTGGTGCACACATAGTTATAGTCAATTTCTTTGTTCCCTTGCCCCGATATATTTATATACTTTTTGCATTGTTTATGTATTCTATCCCCAAAAATTTTATGCTCTAGGGCTGGAAATCAATGAGAGGCCATTGAAGCGACCACTCTTGGATTTTGAGAATTTATCAATTTCAGAAACACTCCACAAAGGTCTGATCATTTCTAAACCTGTACTTGTGTTCTTTTTTTTTTCTTTACACCACAAGTCGATCTTTCCTGAGTTGTTTGTAATTTCACATGGGTCAAATGCTTGTTTTACCTTTGTAATTATCTCTTGCACCGTAAGTACCACTTAGCCATTAATAAACATGTTCATGCAACAATGTATGGTTCTTCACGAATATTCAGTCGCAGATTATACGTAGTATTTTTCTTCTTCTGGGGGGATGTAAATTTGTTGTTGCATGGATTCTTTGTGGGAAAACTGTGTCGACCTTTATATGAAAAGTAATGGGGTGAATTTCATTGTTGTTATTGTTTCTTCTTTTTCTATGAGGGAGGGGAGAAGTGGATTTATTATCTTTATGGTTCTTGCCAATTGATTAAACGTCTCTATTTGGTTGGGGTATCAACCTCGAAAATGATTTTACTGTATTTCACGGTTATATGGTCAATGGAGTATGATTTAAATATAAATCTATTTAACTCCCTATCCCTAATTGGATATCTTTCTCTTGCATCAGAGGAATTAAAGACCAAGAAGATATTTGTACAGCATGTGGAGACATTAAGAAGCTCTGATGCCACTGTTGACATTGTGCAGTCTTTTGTGGTCAGTACTCTAGTTAGTTATTAATCTTCTTCTTCAATATTTTAGCTCTCTTCTACATCAGTAACCATTTTTCCTTTAGGCACCTGATGCTGCTTCCACCATTGAAAATAACCTAAAGAATGAGGAGCGCAGAAGAAATTTTAAGAGAGAGATTGTATGCTGTCCTATCTATTTGCTTGTTTGGTTCTTAGTTTGTGCGGTACTTATTTGGTATTTTCTCTCACCTTAACTTGTATTATGCAGTCGAGACAAGATCAGTTGTTGGTTAAAGCTAGACAAGAACAGGAGGTATGATGTATGATGACATTCCTTTAATGCTCTTAAAAAGATGAATATTAACATTGTTTGATCAGAAGATTTTTGGTCAGATAAGATTATGAACCCACTTGCACTTATAGATGGCATTCTATAGTATGATTAACTTGTTTTCATATATTGAGCTTCTAATTTATTTTGGTGAGGTATCATGGTTTCTTTGTGCTACTGCTTTCTCCTTTTATCAGCTTGCGGCAAAAAACGCTAGATTTGAGCAGATATGGAGAAGTAGGAAAGGGGTTAAAGATGAAAAAGATGACCAGTTACGTGATGTATATCATATCTATGATATTGTTCGTCTTGATACAAATGAAATATCAAGTGAATCCCCAAAGCAGGAGTGAGTTCTACTATATTGATGTTATTCGGTCTCAATACTTTACAAAATCCTCATTTATGTGGGCAAATTTTATTTTGTTATTAGTGCAGACAAATGTCTCTGGAGGATCAGAGTATGTTATCAAGTTACTTGCCGTTACTAAGGGAGTTTATTCCAAGTGCCGCTGCTGAAATTGAATCAGATATAGATGCAAACATGATGAAACAAAATTGTAAGTTCCAATTCTTCTAGCAGTCACTTGAATTCTATGGCATACAACTTTAGTTATGAATGATGCAACTATGATCCTATGCAATTCAACAGTAGAAAGTTGGATGAAGAGGATAATTATTATTCATCCGTTATTTGTTTTTCCAGCTATCGTCTCCTGTTCTTGCTTTGCGCAAGTTTTTTTCCTTACCTCACTCACTTTTTAGTTTCATCTATGTATTTGGGATTTTATTTTAATTCCTGTTGTAATATTTTGATATTTCATTTATATATGAAATGGTTTTTTATAAAAAAGAAAATGTAATTTCTTATTGTTATGTCTCTGTCTTCACTTCTTCAGTGCCTGTAGATGATTATGTGTATGACTACTATACTGTGAAGAATGATGTGGAGATTGCTGAAGACGATGCCTCCCATCCATTTCCTTTGTGCGTCTTTCTTCCTTTTCCCCTTTCTGCTATGGTTTACACTTCATGTTTTTTTTAATCATTTCATATATTTTTTTTCAGGATACAAGTTGATGACTTAGATCATGATGGGCCTAGTGACTCAGATTATGAAACTGATGATTCAAATGGTAAAAACCAATGACCATTTCCTTCTAGTTTACAAACATAAGTTATATCTAATTTCTTTTATGCTTTTTGTCTTCTTTGGTTTCAGCTGAAAACAATCCGTGCTTCGATTACCCAGATGAGGAAGAGTTGGAGAGTACATCTTCAAATGATGAATTGGAAGATAGTGATGATGAGAAGCAGTCCTCAGAAAGTAATGATGTAGAAGAAGATGAGTTATCGGAGGAGGAGAAAGTTGAATTATATGAGGATGAAATATATGATGATTTTGATGAAGAGGATGGTGCTGATAGCTTTGATTATGATAGTAATGTTGGTCATGATGAAGGTGAAGATTGGAGATGGTCCTATCGTTGAATTTTTCACTAGAGATAGAACAAGCTTTTCATCCTTGTGAATATATATATCTTTTCTTAATTAGGATTTAGGGGAGGAATGCTTGCTATGATTAGGGATGTAATGTTGGAGATTTAGAGTCTTTTTTACTTGATTAGGGAAAAATGTTTAGATTTTTTAAAAAGCTGACTTTTATTTTATTTGGTTTTGATTGAACTTGTAAATTTTTAGTCGGTTTGGATGTCAAATATTTCAATTTCTTTTTTCTAAACGACTCATTTTTACCATTAAA

Coding sequence (CDS)

ATGGCATTCTATAGTATGATTAACTTGTTTTCATATATTGAGCTTCTAATTTATTTTGGTGAGGTATCATGGTTTCTTTGTGCTACTGCTTTCTCCTTTTATCAGCTTGCGGCAAAAAACGCTAGATTTGAGCAGATATGGAGAAGTAGGAAAGGGGTTAAAGATGAAAAAGATGACCAGTTACGTGATGTATATCATATCTATGATATTGTTCGTCTTGATACAAATGAAATATCAAGTGAATCCCCAAAGCAGGAACAAATGTCTCTGGAGGATCAGAGTATGTTATCAAGTTACTTGCCGTTACTAAGGGAGTTTATTCCAAGTGCCGCTGCTGAAATTGAATCAGATATAGATGCAAACATGATGAAACAAAATTTGCCTGTAGATGATTATGTGTATGACTACTATACTGTGAAGAATGATGTGGAGATTGCTGAAGACGATGCCTCCCATCCATTTCCTTTGATACAAGTTGATGACTTAGATCATGATGGGCCTAGTGACTCAGATTATGAAACTGATGATTCAAATGCTGAAAACAATCCGTGCTTCGATTACCCAGATGAGGAAGAGTTGGAGAGTACATCTTCAAATGATGAATTGGAAGATAGTGATGATGAGAAGCAGTCCTCAGAAAGTAATGATGTAGAAGAAGATGAGTTATCGGAGGAGGAGAAAGTTGAATTATATGAGGATGAAATATATGATGATTTTGATGAAGAGGATGGTGCTGATAGCTTTGATTATGATAGTAATGTTGGTCATGATGAAGGTGAAGATTGGAGATGGTCCTATCGTTGA

Protein sequence

MAFYSMINLFSYIELLIYFGEVSWFLCATAFSFYQLAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR

Homology

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BLAST of Cucsat.G2634.T4 vs. ExPASy Swiss-Prot
Match: Q8GYP3 (RNA-directed DNA methylation 4 OS=Arabidopsis thaliana OX=3702 GN=RDM4 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-33
Identity = 94/211 (44.55%), Postives = 144/211 (68.25%), Query Frame = 0


Query: 35  QLAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQS 94
           Q+A++NARFEQIWRSRKG K    + + +  H +D++R+DT E    +  QE  SLEDQ 
Sbjct: 135 QIASENARFEQIWRSRKGNK----EGIHEKCHFFDVIRVDTEERRDNA--QEFTSLEDQK 194

Query: 95  MLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPF 154
           ML+S+LPLLRE IP+AA EIE+DI      Q+   ++YVYDYY V  +++I+ED + + F
Sbjct: 195 MLASFLPLLRECIPTAAEEIEADI------QSSHTEEYVYDYYAVNEEMDISEDSSKNQF 254

Query: 155 PLIQVDDLDH--DGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSS 214
           PL+ V+D +   DG  +SDY+++DSNAE++P  DYP+EEE E    +D+ +D + E++ S
Sbjct: 255 PLVIVEDEEEFCDGSDESDYDSEDSNAEDHPKTDYPEEEEEEEEEDDDDDDDDESEEEKS 314

Query: 215 ESNDVEEDELSEEEKV-ELYEDEIYDDFDEE 243
           E++D  +DE + +  V  +  D+ +DD+ E+
Sbjct: 315 EASDESDDEETSKRHVRSVLGDDEFDDYAED 333

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BLAST of Cucsat.G2634.T4 vs. NCBI nr
Match: XP_004139832.1 (RNA-directed DNA methylation 4 [Cucumis sativus] >KGN44279.1 hypothetical protein Csa_016181 [Cucumis sativus])

HSP 1 Score: 437 bits (1124), Expect = 1.62e-151
Identity = 231/233 (99.14%), Postives = 232/233 (99.57%), Query Frame = 0


Query: 35  QLAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQS 94
           +LAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQS
Sbjct: 133 ELAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQS 192

Query: 95  MLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPF 154
           MLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPF
Sbjct: 193 MLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPF 252

Query: 155 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSES 214
           PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSES
Sbjct: 253 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSES 312

Query: 215 NDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 267
           NDVEEDELSEEEKVELYEDEIYDD DEEDGADSFDYDSNVGHDEGEDWRWSYR
Sbjct: 313 NDVEEDELSEEEKVELYEDEIYDDCDEEDGADSFDYDSNVGHDEGEDWRWSYR 365

[Close]

BLAST of Cucsat.G2634.T4 vs. NCBI nr
Match: XP_008447116.1 (PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo] >XP_008447117.1 PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo] >XP_016900354.1 PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 419 bits (1076), Expect = 3.23e-144
Identity = 220/233 (94.42%), Postives = 226/233 (97.00%), Query Frame = 0


Query: 35  QLAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQS 94
           +L AKNARFEQIWRSRKGVKDEKDDQL DVYHIYDIVRLDTNEISSE+P+QEQMSLEDQS
Sbjct: 133 ELVAKNARFEQIWRSRKGVKDEKDDQLHDVYHIYDIVRLDTNEISSEAPRQEQMSLEDQS 192

Query: 95  MLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPF 154
           MLSSYLPLLREFIPSAAAEIESDID +MMKQNLPVDDYVYDYYTVK DVEI EDDASHPF
Sbjct: 193 MLSSYLPLLREFIPSAAAEIESDIDPSMMKQNLPVDDYVYDYYTVKTDVEIPEDDASHPF 252

Query: 155 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSES 214
           PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELES SSNDELEDSDDEKQSSES
Sbjct: 253 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDELEDSDDEKQSSES 312

Query: 215 NDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 267
           NDVEEDELSEEEKVELYEDEIYDDFDE+DGADSFDYDSN GHD+GEDWRWSYR
Sbjct: 313 NDVEEDELSEEEKVELYEDEIYDDFDEDDGADSFDYDSNGGHDKGEDWRWSYR 365

[Close]

BLAST of Cucsat.G2634.T4 vs. NCBI nr
Match: KAA0051104.1 (RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa] >TYK02694.1 RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 419 bits (1077), Expect = 1.71e-143
Identity = 221/233 (94.85%), Postives = 226/233 (97.00%), Query Frame = 0


Query: 35  QLAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQS 94
           +L AKNARFEQIWRSRKGVKDEKDDQL DVYHIYDIVRLDTNEISSE+P+QEQMSLEDQS
Sbjct: 192 ELVAKNARFEQIWRSRKGVKDEKDDQLHDVYHIYDIVRLDTNEISSEAPRQEQMSLEDQS 251

Query: 95  MLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPF 154
           MLSSYLPLLREFIPSAAAEIESDIDA+MMKQNLPVDDYVYDYYTVK DVEI EDDASHPF
Sbjct: 252 MLSSYLPLLREFIPSAAAEIESDIDASMMKQNLPVDDYVYDYYTVKTDVEIPEDDASHPF 311

Query: 155 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSES 214
           PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELES SSNDELEDSDDEKQSSES
Sbjct: 312 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDELEDSDDEKQSSES 371

Query: 215 NDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 267
           NDVEEDELSEEEKVELYEDEIYDDFDE+DGADSFDYDSN G DEGEDWRWSYR
Sbjct: 372 NDVEEDELSEEEKVELYEDEIYDDFDEDDGADSFDYDSNGGRDEGEDWRWSYR 424

[Close]

BLAST of Cucsat.G2634.T4 vs. NCBI nr
Match: XP_008447118.1 (PREDICTED: RNA-directed DNA methylation 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 410 bits (1053), Expect = 9.46e-141
Identity = 218/233 (93.56%), Postives = 224/233 (96.14%), Query Frame = 0


Query: 35  QLAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQS 94
           +L AKNARFEQIWRSRKGVKDEKDDQL DVYHIYDIVRLDTNEISSE+P+Q  MSLEDQS
Sbjct: 133 ELVAKNARFEQIWRSRKGVKDEKDDQLHDVYHIYDIVRLDTNEISSEAPRQ--MSLEDQS 192

Query: 95  MLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPF 154
           MLSSYLPLLREFIPSAAAEIESDID +MMKQNLPVDDYVYDYYTVK DVEI EDDASHPF
Sbjct: 193 MLSSYLPLLREFIPSAAAEIESDIDPSMMKQNLPVDDYVYDYYTVKTDVEIPEDDASHPF 252

Query: 155 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSES 214
           PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELES SSNDELEDSDDEKQSSES
Sbjct: 253 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDELEDSDDEKQSSES 312

Query: 215 NDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 267
           NDVEEDELSEEEKVELYEDEIYDDFDE+DGADSFDYDSN GHD+GEDWRWSYR
Sbjct: 313 NDVEEDELSEEEKVELYEDEIYDDFDEDDGADSFDYDSNGGHDKGEDWRWSYR 363

[Close]

BLAST of Cucsat.G2634.T4 vs. NCBI nr
Match: XP_038885561.1 (RNA-directed DNA methylation 4 [Benincasa hispida] >XP_038885562.1 RNA-directed DNA methylation 4 [Benincasa hispida])

HSP 1 Score: 358 bits (920), Expect = 1.84e-120
Identity = 197/239 (82.43%), Postives = 219/239 (91.63%), Query Frame = 0


Query: 35  QLAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQE-QMSLEDQ 94
           ++ AKNARFEQIWRSRKGVKD KDDQL D+YHIYDIVRLD NEIS E+PKQE QMSL+DQ
Sbjct: 133 EVLAKNARFEQIWRSRKGVKDSKDDQLHDIYHIYDIVRLDANEISIEAPKQEEQMSLDDQ 192

Query: 95  SMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHP 154
           SMLSSYLPLLREFIPSAAAEIESDIDANMMKQ+LP+DDYVYDYYTVK++VEIA+DDAS+P
Sbjct: 193 SMLSSYLPLLREFIPSAAAEIESDIDANMMKQDLPIDDYVYDYYTVKDNVEIADDDASNP 252

Query: 155 FPLIQVDDLD-HDGPSDSDYETDDSNAENNPCFDYPDE----EELESTSSNDELEDSDDE 214
           FPLIQVDDLD +DGP DSDYE+DDSNAENNPCFDYPDE    EELES S NDELED+DD+
Sbjct: 253 FPLIQVDDLDLYDGPDDSDYESDDSNAENNPCFDYPDEVSDEEELESGSLNDELEDNDDD 312

Query: 215 KQSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 267
           KQSSESN++E D  SEE+K++LYEDEIY DFDE+D ADSFDYD+N GHDEGEDWRWSYR
Sbjct: 313 KQSSESNELE-DVFSEEDKIQLYEDEIYGDFDEDD-ADSFDYDTNGGHDEGEDWRWSYR 369

[Close]

BLAST of Cucsat.G2634.T4 vs. ExPASy TrEMBL
Match: A0A0A0K5Q3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238430 PE=4 SV=1)

HSP 1 Score: 437 bits (1124), Expect = 7.85e-152
Identity = 231/233 (99.14%), Postives = 232/233 (99.57%), Query Frame = 0


Query: 35  QLAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQS 94
           +LAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQS
Sbjct: 133 ELAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQS 192

Query: 95  MLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPF 154
           MLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPF
Sbjct: 193 MLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPF 252

Query: 155 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSES 214
           PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSES
Sbjct: 253 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSES 312

Query: 215 NDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 267
           NDVEEDELSEEEKVELYEDEIYDD DEEDGADSFDYDSNVGHDEGEDWRWSYR
Sbjct: 313 NDVEEDELSEEEKVELYEDEIYDDCDEEDGADSFDYDSNVGHDEGEDWRWSYR 365

[Close]

BLAST of Cucsat.G2634.T4 vs. ExPASy TrEMBL
Match: A0A1S4DWJ0 (RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489641 PE=4 SV=1)

HSP 1 Score: 419 bits (1076), Expect = 1.56e-144
Identity = 220/233 (94.42%), Postives = 226/233 (97.00%), Query Frame = 0


Query: 35  QLAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQS 94
           +L AKNARFEQIWRSRKGVKDEKDDQL DVYHIYDIVRLDTNEISSE+P+QEQMSLEDQS
Sbjct: 133 ELVAKNARFEQIWRSRKGVKDEKDDQLHDVYHIYDIVRLDTNEISSEAPRQEQMSLEDQS 192

Query: 95  MLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPF 154
           MLSSYLPLLREFIPSAAAEIESDID +MMKQNLPVDDYVYDYYTVK DVEI EDDASHPF
Sbjct: 193 MLSSYLPLLREFIPSAAAEIESDIDPSMMKQNLPVDDYVYDYYTVKTDVEIPEDDASHPF 252

Query: 155 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSES 214
           PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELES SSNDELEDSDDEKQSSES
Sbjct: 253 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDELEDSDDEKQSSES 312

Query: 215 NDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 267
           NDVEEDELSEEEKVELYEDEIYDDFDE+DGADSFDYDSN GHD+GEDWRWSYR
Sbjct: 313 NDVEEDELSEEEKVELYEDEIYDDFDEDDGADSFDYDSNGGHDKGEDWRWSYR 365

[Close]

BLAST of Cucsat.G2634.T4 vs. ExPASy TrEMBL
Match: A0A5D3BU38 (RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00230 PE=4 SV=1)

HSP 1 Score: 419 bits (1077), Expect = 8.29e-144
Identity = 221/233 (94.85%), Postives = 226/233 (97.00%), Query Frame = 0


Query: 35  QLAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQS 94
           +L AKNARFEQIWRSRKGVKDEKDDQL DVYHIYDIVRLDTNEISSE+P+QEQMSLEDQS
Sbjct: 192 ELVAKNARFEQIWRSRKGVKDEKDDQLHDVYHIYDIVRLDTNEISSEAPRQEQMSLEDQS 251

Query: 95  MLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPF 154
           MLSSYLPLLREFIPSAAAEIESDIDA+MMKQNLPVDDYVYDYYTVK DVEI EDDASHPF
Sbjct: 252 MLSSYLPLLREFIPSAAAEIESDIDASMMKQNLPVDDYVYDYYTVKTDVEIPEDDASHPF 311

Query: 155 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSES 214
           PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELES SSNDELEDSDDEKQSSES
Sbjct: 312 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDELEDSDDEKQSSES 371

Query: 215 NDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 267
           NDVEEDELSEEEKVELYEDEIYDDFDE+DGADSFDYDSN G DEGEDWRWSYR
Sbjct: 372 NDVEEDELSEEEKVELYEDEIYDDFDEDDGADSFDYDSNGGRDEGEDWRWSYR 424

[Close]

BLAST of Cucsat.G2634.T4 vs. ExPASy TrEMBL
Match: A0A1S3BG45 (RNA-directed DNA methylation 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489641 PE=4 SV=1)

HSP 1 Score: 410 bits (1053), Expect = 4.58e-141
Identity = 218/233 (93.56%), Postives = 224/233 (96.14%), Query Frame = 0


Query: 35  QLAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQS 94
           +L AKNARFEQIWRSRKGVKDEKDDQL DVYHIYDIVRLDTNEISSE+P+Q  MSLEDQS
Sbjct: 133 ELVAKNARFEQIWRSRKGVKDEKDDQLHDVYHIYDIVRLDTNEISSEAPRQ--MSLEDQS 192

Query: 95  MLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPF 154
           MLSSYLPLLREFIPSAAAEIESDID +MMKQNLPVDDYVYDYYTVK DVEI EDDASHPF
Sbjct: 193 MLSSYLPLLREFIPSAAAEIESDIDPSMMKQNLPVDDYVYDYYTVKTDVEIPEDDASHPF 252

Query: 155 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSES 214
           PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELES SSNDELEDSDDEKQSSES
Sbjct: 253 PLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDELEDSDDEKQSSES 312

Query: 215 NDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 267
           NDVEEDELSEEEKVELYEDEIYDDFDE+DGADSFDYDSN GHD+GEDWRWSYR
Sbjct: 313 NDVEEDELSEEEKVELYEDEIYDDFDEDDGADSFDYDSNGGHDKGEDWRWSYR 363

[Close]

BLAST of Cucsat.G2634.T4 vs. ExPASy TrEMBL
Match: A0A6J1GCH8 (RNA-directed DNA methylation 4 OS=Cucurbita moschata OX=3662 GN=LOC111452902 PE=3 SV=1)

HSP 1 Score: 330 bits (846), Expect = 1.44e-109
Identity = 185/238 (77.73%), Postives = 208/238 (87.39%), Query Frame = 0


Query: 35  QLAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQS 94
           ++ AK ARFEQIWRSRKG+KD +DDQL D YHIYDIVRLDTNE SSE+PK E M+LEDQS
Sbjct: 133 EVLAKKARFEQIWRSRKGIKDPRDDQLHDAYHIYDIVRLDTNETSSEAPKAECMTLEDQS 192

Query: 95  MLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPF 154
           MLSSYLPLLREFIPSAA EIESDI+AN MKQ+LPVDDYVYDYYTVKN+V IAEDDAS+PF
Sbjct: 193 MLSSYLPLLREFIPSAAEEIESDINANTMKQDLPVDDYVYDYYTVKNNVPIAEDDASNPF 252

Query: 155 PLIQVDDLD-HDGPSDSDYETDDSNAENNPCFDYPDE----EELESTSSNDELEDSDDEK 214
           PLIQVDDLD +DGP DSDYE+DDSNAENNP FDYPDE    EELES S+N+E E+ D++K
Sbjct: 253 PLIQVDDLDLYDGPDDSDYESDDSNAENNPHFDYPDEASEEEELESESTNEESEEDDEDK 312

Query: 215 QSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 267
           QSSE+N +EED+LSE   V+L EDEIY DFDE+DG DSFDYDSN G +EGEDWRWSYR
Sbjct: 313 QSSEANGLEEDDLSEN-GVQLDEDEIYGDFDEDDG-DSFDYDSNGGQEEGEDWRWSYR 368

[Close]

BLAST of Cucsat.G2634.T4 vs. TAIR 10
Match: AT2G30280.1 (RNA-directed DNA methylation 4 )

HSP 1 Score: 144.4 bits (363), Expect = 1.3e-34
Identity = 94/211 (44.55%), Postives = 144/211 (68.25%), Query Frame = 0


Query: 35  QLAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQS 94
           Q+A++NARFEQIWRSRKG K    + + +  H +D++R+DT E    +  QE  SLEDQ 
Sbjct: 135 QIASENARFEQIWRSRKGNK----EGIHEKCHFFDVIRVDTEERRDNA--QEFTSLEDQK 194

Query: 95  MLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPF 154
           ML+S+LPLLRE IP+AA EIE+DI      Q+   ++YVYDYY V  +++I+ED + + F
Sbjct: 195 MLASFLPLLRECIPTAAEEIEADI------QSSHTEEYVYDYYAVNEEMDISEDSSKNQF 254

Query: 155 PLIQVDDLDH--DGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSS 214
           PL+ V+D +   DG  +SDY+++DSNAE++P  DYP+EEE E    +D+ +D + E++ S
Sbjct: 255 PLVIVEDEEEFCDGSDESDYDSEDSNAEDHPKTDYPEEEEEEEEEDDDDDDDDESEEEKS 314

Query: 215 ESNDVEEDELSEEEKV-ELYEDEIYDDFDEE 243
           E++D  +DE + +  V  +  D+ +DD+ E+
Sbjct: 315 EASDESDDEETSKRHVRSVLGDDEFDDYAED 333

The following BLAST results are available for this feature:

BLAST of Cucsat.G2634.T4 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYP3	1.8e-33	44.55	RNA-directed DNA methylation 4 OS=Arabidopsis thaliana OX=3702 GN=RDM4 PE=1 SV=1	[more]

BLAST of Cucsat.G2634.T4 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139832.1	1.62e-151	99.14	RNA-directed DNA methylation 4 [Cucumis sativus] >KGN44279.1 hypothetical protei...	[more]
XP_008447116.1	3.23e-144	94.42	PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo] >XP_008...	[more]
KAA0051104.1	1.71e-143	94.85	RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa] >TYK02...	[more]
XP_008447118.1	9.46e-141	93.56	PREDICTED: RNA-directed DNA methylation 4-like isoform X2 [Cucumis melo]	[more]
XP_038885561.1	1.84e-120	82.43	RNA-directed DNA methylation 4 [Benincasa hispida] >XP_038885562.1 RNA-directed ...	[more]

BLAST of Cucsat.G2634.T4 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5Q3	7.85e-152	99.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238430 PE=4 SV=1	[more]
A0A1S4DWJ0	1.56e-144	94.42	RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5D3BU38	8.29e-144	94.85	RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BG45	4.58e-141	93.56	RNA-directed DNA methylation 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1GCH8	1.44e-109	77.73	RNA-directed DNA methylation 4 OS=Cucurbita moschata OX=3662 GN=LOC111452902 PE=...	[more]

BLAST of Cucsat.G2634.T4 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30280.1	1.3e-34	44.55	RNA-directed DNA methylation 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..267
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..267
None	No IPR available	PANTHER	PTHR31934:SF2	RNA-DIRECTED DNA METHYLATION 4	coord: 35..267
None	No IPR available	PANTHER	PTHR31934	ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN	coord: 35..267

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G2634	Cucsat.G2634	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G2634.T4.E1	Cucsat.G2634.T4.E1	exon
Cucsat.G2634.T4.E2	Cucsat.G2634.T4.E2	exon
Cucsat.G2634.T4.E3	Cucsat.G2634.T4.E3	exon
Cucsat.G2634.T4.E4	Cucsat.G2634.T4.E4	exon
Cucsat.G2634.T4.E5	Cucsat.G2634.T4.E5	exon
Cucsat.G2634.T4.E6	Cucsat.G2634.T4.E6	exon
Cucsat.G2634.T4.E7	Cucsat.G2634.T4.E7	exon
Cucsat.G2634.T4.E8	Cucsat.G2634.T4.E8	exon
Cucsat.G2634.T4.E9	Cucsat.G2634.T4.E9	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G2634.T4.C1	Cucsat.G2634.T4.C1	CDS
Cucsat.G2634.T4.C2	Cucsat.G2634.T4.C2	CDS
Cucsat.G2634.T4.C3	Cucsat.G2634.T4.C3	CDS
Cucsat.G2634.T4.C4	Cucsat.G2634.T4.C4	CDS
Cucsat.G2634.T4.C5	Cucsat.G2634.T4.C5	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G2634.T4	Cucsat.G2634.T4-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006306	DNA methylation
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity