Cucsat.G2634.T12 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G2634.T12
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	RNA-directed DNA methylation 4-like isoform X1
Location	ctg1006: 495977 .. 501619 (+)
RNA-Seq Expression	Cucsat.G2634.T12
Synteny	Cucsat.G2634.T12

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCAGACATTTGATTCCGAAGAGGAGACCTCCGTAGTGTTAAGTCGGAGGACATTGTTATTACTCTTCTTCTTTCCTTTTTAATAAGAAAAAAAGGAGAGAAAATAAGAGAAAAGGGTAACCACGCACGCTGCCCTCTCCATTGGACTTTCGAAGTTTCTCTTCCGCTCACAATCTCTCCTTCACGCCGACAACCCTCCTCCGACGCCGGACGACGACCAGCGCGCCACGCCAGCGACCCTCAACTTTTAAATATCCTTTGCCGTCAGTCTAGGTCGGGGCTGTCCTGTGTCATTCCGTCCGTGGTCGTTGAGCCGGGCCAGCTTTGAGACGCGTCGTGTTGCTTTCTGCCTGTAGATCGTCGTAATTTGAGGTCAGTTTTGCACGTTGGGAGTTGATTCTCCGAAATCTTTCCACTATTCCACTATGGATCATAAGTATATTACCAGCTTTCAATTTGAATGCTATTCAATGTTTAATTCCAAGACTTAAAGTTAAAGTTTACTTGGAGATATTTTGTCATTCTGTCTAATTATTGCTAAAGCTTGTCCAAATAATTTATCTTGAATGTCCAAGGAAGCAGCCATACAATTATGTATACAACCCATTGAAAATTTCATCAACCTTAATAGAATTTTGGGTTTAGATAATATTCCACTGCATGCAAAGGGCGATGCAACTGAAGCTCCCATCATTGTAAATTAGTTTTGTACTTTTCTTCCTTACCATCAAAGGATTTAGCGATGGTCTCATTAGCTCTATCCATAACCTCATAAATGGTCGAGCTTCTTCTTATGTTTTGAGTTTAGAAAGATATTTGTTCTTCCTTGAAAGAGAGGATAACAGGAGAGGGATTTCGATATTGTATCAAGGAATTCATTCCTATACTATCATCAATAATATTAGTAGAAATTACATACAATAGTTGGCTTCCATCATAATGTCATGCAAGTTGTAGTAAAGCGATTCTTCACTGGTCTAACTAATTCCTTTTGATTAGTAAACCGCCTCATCATGTTTAACAATCCTAGACTAACATAAATGAAACTGCTAACATACATGCCTCTTTTTAATGTTTTGCAAATATGTGGGATCTTGTATATATCCTCCAACATCAAATCACTGAGGGCACATGGAGACCAAATTAATTTTGATCATTTTGCTTCTAACAATTGCCTTATAAACAAAGTAAAATAAGAACAATATTTAGGCTTCTTAGTTGTGTAAGCATAAGACTAATAAATTTAATAAAGTGTTGGTACTTTGCATTATTTCTTACCTGCCATAACATTTGCTGAAGCACTATGAATAAAAACTTGTTCGACATTAACTTTTCCGATGCAATAGCAACTTGTTTGAAATTAACTTTTCCGATGCAATAGCAACTTGTTTGACATTAGCTTTTCCAATGCGCTCTATGAAATTGTCAAGCGACTCGAACATTTTCTTTCCATCCTTCACATAAGATGAAGCAATGAATACGGTGCCTTAGGACTATTATCTAAAAAGTTAATCAATGTCCTATGTCTTCTATTTGTCCATCCATCAGCCATAACGGTGTGTCCAACCTTTGCCGACTTTGCCTTATGGCTCTTCATCAACTCATTTGCAGATTCCAATTCCTTTTTCAAACACGACACTCTCAATTCATGATACGATGGTGGTTTCAGTCCAGGACCAAATTGTCCTATTGCCTCAATCATAGGGGCAAAGCTATCATAAGTGCAAGTGTGTGGTGTTTGGCCATTTTTTATTACTACCTTTTTGCTTGAAATCATTGAACTTCTACATTCACATCATTATAACAGTGTCTTCCATAGTTCCCTATTCCATCCTTGTTTCTTTGTGTTGTTTGCGTTTTGTTGCAGCTCATTCGTTAGGATGAATTCCCAATGCATACCTTCCTGTTAATGTTTCGTTTTAGGTTGAACTATGCTTTTAGGTTTTTATTTTTATCGTTGGTTGCTTTTGTTTTGATGCCACTGTTGGCACTTTTATATCTCTAAATGGAAGTCTTCAGTTTTGAAGAAAGCAAGAAGAGAGAGAAAAAAAAGAGCTTGTAGATTTGGTAAAAAAAGCAGTCTTCATAGTGTGTAGAAAAGTTACTTATTGTTTCCTCATTTAAGATGTTGCTCACGAAGGTTATAAATATGTATTGTACTTACTCATGGTGTTTGTTGCTGTCTTCTGTGTTTGAATGCAGGTTCTTTCTTCATCATTGCTTGCCCTAACCACATTAATTGATGCCATAGTGAGGGTCGGTCTGAACGATCAGGGACTGGAAAAAGCAGTGGTGAAACAAGGTGTGCTTCCAATTCTAGGGAGACCGTTGAAGCCTAAAAGTATTCAGTCTTAAGGGGTCTTGCCAAAAATATTCCTCATGCTTTTAGAGAATAGAACATAAAACTATTGCCCGTCGTATGGCGCTCATTGGTGAGAGCTCTTCTTCTGTTTCCAAACTCGTGGACGAAAAGCCAGTTTTAGTTAGGGTTAAGCGCAAAGCTTCCCAATCTCGACTTGATGCATTATGTGAGTTCTGTTTAGACACTCTCTTTCATTCCCTTCCTCAAAGAATTTCTTTTGCTAATTTAGGTTTGTGATTTGCATAGTTCAGCTCTTTTAACTCTTGGAGATCACATTCTTCTATTGTCTTCTTATTAGCCATCTCCTTCGATGTTTAATTATTTATGAGCCATCGAATGAAGTCTGAATTGTTCCATGTTTGCATTGACCTTTGTGATGATTTTCAGCCTATTGTTATGTGGTGCACACATAGTTATAGTCAATTTCTTTGTTCCCTTGCCCCGATATATTTATATACTTTTTGCATTGTTTATGTATTCTATCCCCAAAAATTTTATGCTCTAGGGCTGGAAATCAATGAGAGGCCATTGAAGCGACCACTCTTGGATTTTGAGAATTTATCAATTTCAGAAACACTCCACAAAGGTCTGATCATTTCTAAACCTGTACTTGTGTTCTTTTTTTTTTCTTTACACCACAAGTCGATCTTTCCTGAGTTGTTTGTAATTTCACATGGGTCAAATGCTTGTTTTACCTTTGTAATTATCTCTTGCACCGTAAGTACCACTTAGCCATTAATAAACATGTTCATGCAACAATGTATGGTTCTTCACGAATATTCAGTCGCAGATTATACGTAGTATTTTTCTTCTTCTGGGGGGATGTAAATTTGTTGTTGCATGGATTCTTTGTGGGAAAACTGTGTCGACCTTTATATGAAAAGTAATGGGGTGAATTTCATTGTTGTTATTGTTTCTTCTTTTTCTATGAGGGAGGGGAGAAGTGGATTTATTATCTTTATGGTTCTTGCCAATTGATTAAACGTCTCTATTTGGTTGGGGTATCAACCTCGAAAATGATTTTACTGTATTTCACGGTTATATGGTCAATGGAGTATGATTTAAATATAAATCTATTTAACTCCCTATCCCTAATTGGATATCTTTCTCTTGCATCAGAGGAATTAAAGACCAAGAAGATATTTGTACAGCATGTGGAGACATTAAGAAGCTCTGATGCCACTGTTGACATTGTGCAGTCTTTTGTGGTCAGTACTCTAGTTAGTTATTAATCTTCTTCTTCAATATTTTAGCTCTCTTCTACATCAGTAACCATTTTTCCTTTAGGCACCTGATGCTGCTTCCACCATTGAAAATAACCTAAAGAATGAGGAGCGCAGAAGAAATTTTAAGAGAGAGATTGTATGCTGTCCTATCTATTTGCTTGTTTGGTTCTTAGTTTGTGCGGTACTTATTTGGTATTTTCTCTCACCTTAACTTGTATTATGCAGTCGAGACAAGATCAGTTGTTGGTTAAAGCTAGACAAGAACAGGAGGTATGATGTATGATGACATTCCTTTAATGCTCTTAAAAAGATGAATATTAACATTGTTTGATCAGAAGATTTTTGGTCAGATAAGATTATGAACCCACTTGCACTTATAGATGGCATTCTATAGTATGATTAACTTGTTTTCATATATTGAGCTTCTAATTTATTTTGGTGAGGTATCATGGTTTCTTTGTGCTACTGCTTTCTCCTTTTATCAGCTTGCGGCAAAAAACGCTAGATTTGAGCAGATATGGAGAAGTAGGAAAGGGGTTAAAGATGAAAAAGATGACCAGTTACGTGATGTATATCATATCTATGATATTGTTCGTCTTGATACAAATGAAATATCAAGTGAATCCCCAAAGCAGGAGTGAGTTCTACTATATTGATGTTATTCGGTCTCAATACTTTACAAAATCCTCATTTATGTGGGCAAATTTTATTTTGTTATTAGTGCAGACAAATGTCTCTGGAGGATCAGAGTATGTTATCAAGTTACTTGCCGTTACTAAGGGAGTTTATTCCAAGTGCCGCTGCTGAAATTGAATCAGATATAGATGCAAACATGATGAAACAAAATTGTAAGTTCCAATTCTTCTAGCAGTCACTTGAATTCTATGGCATACAACTTTAGTTATGAATGATGCAACTATGATCCTATGCAATTCAACAGTAGAAAGTTGGATGAAGAGGATAATTATTATTCATCCGTTATTTGTTTTTCCAGCTATCGTCTCCTGTTCTTGCTTTGCGCAAGTTTTTTTCCTTACCTCACTCACTTTTTAGTTTCATCTATGTATTTGGGATTTTATTTTAATTCCTGTTGTAATATTTTGATATTTCATTTATATATGAAATGGTTTTTTATAAAAAAGAAAATGTAATTTCTTATTGTTATGTCTCTGTCTTCACTTCTTCAGTGCCTGTAGATGATTATGTGTATGACTACTATACTGTGAAGAATGATGTGGAGATTGCTGAAGACGATGCCTCCCATCCATTTCCTTTGTGCGTCTTTCTTCCTTTTCCCCTTTCTGCTATGGTTTACACTTCATGTTTTTTTTAATCATTTCATATATTTTTTTTCAGGATACAAGTTGATGACTTAGATCATGATGGGCCTAGTGACTCAGATTATGAAACTGATGATTCAAATGGTAAAAACCAATGACCATTTCCTTCTAGTTTACAAACATAAGTTATATCTAATTTCTTTTATGCTTTTTGTCTTCTTTGGTTTCAGCTGAAAACAATCCGTGCTTCGATTACCCAGATGAGGAAGAGTTGGAGAGTACATCTTCAAATGATGAATTGGAAGATAGTGATGATGAGAAGCAGTCCTCAGAAAGTAATGATGTAGAAGAAGATGAGTTATCGGAGGAGGAGAAAGTTGAATTATATGAGGATGAAATATATGATGATTTTGATGAAGAGGATGGTGCTGATAGCTTTGATTATGATAGTAATGTTGGTCATGATGAAGGTGAAGATTGGAGATGGTCCTATCGTTGAATTTTTCACTAGAGATAGAACAAGCTTTTCATCCTTGTGAATATATATATCTTTTCTTAATTAGGATTTAGGGGAGGAATGCTTGCTATGATTAGGGATGTAATGTTGGAGATTTAGAGTCTTTTTTACTTGATTAGGGAAAAATGTTTAGATTTTTTAAAAAGCTGACTTTTATTTTATTTGGTTTTGATTGAACTTGTAAATTTTTAGTCGGTTTGGATGTCAAATATTTCAATTTCTTTTTTCTAAACGACTCATTTTTACCATTAAATACT

Coding sequence (CDS)

ATGTCTCTGGAGGATCAGAGTATGTTATCAAGTTACTTGCCGTTACTAAGGGAGTTTATTCCAAGTGCCGCTGCTGAAATTGAATCAGATATAGATGCAAACATGATGAAACAAAATTTGCCTGTAGATGATTATGTGTATGACTACTATACTGTGAAGAATGATGTGGAGATTGCTGAAGACGATGCCTCCCATCCATTTCCTTTGATACAAGTTGATGACTTAGATCATGATGGGCCTAGTGACTCAGATTATGAAACTGATGATTCAAATGCTGAAAACAATCCGTGCTTCGATTACCCAGATGAGGAAGAGTTGGAGAGTACATCTTCAAATGATGAATTGGAAGATAGTGATGATGAGAAGCAGTCCTCAGAAAGTAATGATGTAGAAGAAGATGAGTTATCGGAGGAGGAGAAAGTTGAATTATATGAGGATGAAATATATGATGATTTTGATGAAGAGGATGGTGCTGATAGCTTTGATTATGATAGTAATGTTGGTCATGATGAAGGTGAAGATTGGAGATGGTCCTATCGTTGA

Protein sequence

MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR

Homology

[Close]

BLAST of Cucsat.G2634.T12 vs. ExPASy Swiss-Prot
Match: Q8GYP3 (RNA-directed DNA methylation 4 OS=Arabidopsis thaliana OX=3702 GN=RDM4 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.3e-22
Identity = 70/157 (44.59%), Postives = 109/157 (69.43%), Query Frame = 0


Query: 2   SLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAED 61
           SLEDQ ML+S+LPLLRE IP+AA EIE+DI      Q+   ++YVYDYY V  +++I+ED
Sbjct: 183 SLEDQKMLASFLPLLRECIPTAAEEIEADI------QSSHTEEYVYDYYAVNEEMDISED 242

Query: 62  DASHPFPLIQVDDLDH--DGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSD 121
            + + FPL+ V+D +   DG  +SDY+++DSNAE++P  DYP+EEE E    +D+ +D +
Sbjct: 243 SSKNQFPLVIVEDEEEFCDGSDESDYDSEDSNAEDHPKTDYPEEEEEEEEEDDDDDDDDE 302

Query: 122 DEKQSSESNDVEEDELSEEEKV-ELYEDEIYDDFDEE 156
            E++ SE++D  +DE + +  V  +  D+ +DD+ E+
Sbjct: 303 SEEEKSEASDESDDEETSKRHVRSVLGDDEFDDYAED 333

[Close]

BLAST of Cucsat.G2634.T12 vs. NCBI nr
Match: XP_004139832.1 (RNA-directed DNA methylation 4 [Cucumis sativus] >KGN44279.1 hypothetical protein Csa_016181 [Cucumis sativus])

HSP 1 Score: 335 bits (858), Expect = 1.33e-112
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 1   MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAE 60
           MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAE
Sbjct: 186 MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAE 245

Query: 61  DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDD 120
           DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDD
Sbjct: 246 DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDD 305

Query: 121 EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 180
           EKQSSESNDVEEDELSEEEKVELYEDEIYDD DEEDGADSFDYDSNVGHDEGEDWRWSYR
Sbjct: 306 EKQSSESNDVEEDELSEEEKVELYEDEIYDDCDEEDGADSFDYDSNVGHDEGEDWRWSYR 365

[Close]

BLAST of Cucsat.G2634.T12 vs. NCBI nr
Match: XP_008447118.1 (PREDICTED: RNA-directed DNA methylation 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 322 bits (825), Expect = 1.27e-107
Identity = 172/180 (95.56%), Postives = 175/180 (97.22%), Query Frame = 0


Query: 1   MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAE 60
           MSLEDQSMLSSYLPLLREFIPSAAAEIESDID +MMKQNLPVDDYVYDYYTVK DVEI E
Sbjct: 184 MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDPSMMKQNLPVDDYVYDYYTVKTDVEIPE 243

Query: 61  DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDD 120
           DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELES SSNDELEDSDD
Sbjct: 244 DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDELEDSDD 303

Query: 121 EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 180
           EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDE+DGADSFDYDSN GHD+GEDWRWSYR
Sbjct: 304 EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEDDGADSFDYDSNGGHDKGEDWRWSYR 363

[Close]

BLAST of Cucsat.G2634.T12 vs. NCBI nr
Match: XP_008447116.1 (PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo] >XP_008447117.1 PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo] >XP_016900354.1 PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 322 bits (825), Expect = 1.36e-107
Identity = 172/180 (95.56%), Postives = 175/180 (97.22%), Query Frame = 0


Query: 1   MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAE 60
           MSLEDQSMLSSYLPLLREFIPSAAAEIESDID +MMKQNLPVDDYVYDYYTVK DVEI E
Sbjct: 186 MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDPSMMKQNLPVDDYVYDYYTVKTDVEIPE 245

Query: 61  DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDD 120
           DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELES SSNDELEDSDD
Sbjct: 246 DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDELEDSDD 305

Query: 121 EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 180
           EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDE+DGADSFDYDSN GHD+GEDWRWSYR
Sbjct: 306 EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEDDGADSFDYDSNGGHDKGEDWRWSYR 365

[Close]

BLAST of Cucsat.G2634.T12 vs. NCBI nr
Match: KAA0051104.1 (RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa] >TYK02694.1 RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 322 bits (826), Expect = 6.25e-107
Identity = 173/180 (96.11%), Postives = 175/180 (97.22%), Query Frame = 0


Query: 1   MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAE 60
           MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDA+MMKQNLPVDDYVYDYYTVK DVEI E
Sbjct: 245 MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDASMMKQNLPVDDYVYDYYTVKTDVEIPE 304

Query: 61  DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDD 120
           DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELES SSNDELEDSDD
Sbjct: 305 DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDELEDSDD 364

Query: 121 EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 180
           EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDE+DGADSFDYDSN G DEGEDWRWSYR
Sbjct: 365 EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEDDGADSFDYDSNGGRDEGEDWRWSYR 424

[Close]

BLAST of Cucsat.G2634.T12 vs. NCBI nr
Match: XP_038885561.1 (RNA-directed DNA methylation 4 [Benincasa hispida] >XP_038885562.1 RNA-directed DNA methylation 4 [Benincasa hispida])

HSP 1 Score: 273 bits (699), Expect = 1.94e-88
Identity = 153/185 (82.70%), Postives = 171/185 (92.43%), Query Frame = 0


Query: 1   MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAE 60
           MSL+DQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQ+LP+DDYVYDYYTVK++VEIA+
Sbjct: 187 MSLDDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQDLPIDDYVYDYYTVKDNVEIAD 246

Query: 61  DDASHPFPLIQVDDLD-HDGPSDSDYETDDSNAENNPCFDYPDE----EELESTSSNDEL 120
           DDAS+PFPLIQVDDLD +DGP DSDYE+DDSNAENNPCFDYPDE    EELES S NDEL
Sbjct: 247 DDASNPFPLIQVDDLDLYDGPDDSDYESDDSNAENNPCFDYPDEVSDEEELESGSLNDEL 306

Query: 121 EDSDDEKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDW 180
           ED+DD+KQSSESN++E D  SEE+K++LYEDEIY DFDE+D ADSFDYD+N GHDEGEDW
Sbjct: 307 EDNDDDKQSSESNELE-DVFSEEDKIQLYEDEIYGDFDEDD-ADSFDYDTNGGHDEGEDW 366

[Close]

BLAST of Cucsat.G2634.T12 vs. ExPASy TrEMBL
Match: A0A0A0K5Q3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238430 PE=4 SV=1)

HSP 1 Score: 335 bits (858), Expect = 6.43e-113
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 1   MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAE 60
           MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAE
Sbjct: 186 MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAE 245

Query: 61  DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDD 120
           DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDD
Sbjct: 246 DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDD 305

Query: 121 EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 180
           EKQSSESNDVEEDELSEEEKVELYEDEIYDD DEEDGADSFDYDSNVGHDEGEDWRWSYR
Sbjct: 306 EKQSSESNDVEEDELSEEEKVELYEDEIYDDCDEEDGADSFDYDSNVGHDEGEDWRWSYR 365

[Close]

BLAST of Cucsat.G2634.T12 vs. ExPASy TrEMBL
Match: A0A1S3BG45 (RNA-directed DNA methylation 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489641 PE=4 SV=1)

HSP 1 Score: 322 bits (825), Expect = 6.17e-108
Identity = 172/180 (95.56%), Postives = 175/180 (97.22%), Query Frame = 0


Query: 1   MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAE 60
           MSLEDQSMLSSYLPLLREFIPSAAAEIESDID +MMKQNLPVDDYVYDYYTVK DVEI E
Sbjct: 184 MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDPSMMKQNLPVDDYVYDYYTVKTDVEIPE 243

Query: 61  DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDD 120
           DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELES SSNDELEDSDD
Sbjct: 244 DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDELEDSDD 303

Query: 121 EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 180
           EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDE+DGADSFDYDSN GHD+GEDWRWSYR
Sbjct: 304 EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEDDGADSFDYDSNGGHDKGEDWRWSYR 363

[Close]

BLAST of Cucsat.G2634.T12 vs. ExPASy TrEMBL
Match: A0A1S4DWJ0 (RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489641 PE=4 SV=1)

HSP 1 Score: 322 bits (825), Expect = 6.58e-108
Identity = 172/180 (95.56%), Postives = 175/180 (97.22%), Query Frame = 0


Query: 1   MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAE 60
           MSLEDQSMLSSYLPLLREFIPSAAAEIESDID +MMKQNLPVDDYVYDYYTVK DVEI E
Sbjct: 186 MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDPSMMKQNLPVDDYVYDYYTVKTDVEIPE 245

Query: 61  DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDD 120
           DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELES SSNDELEDSDD
Sbjct: 246 DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDELEDSDD 305

Query: 121 EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 180
           EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDE+DGADSFDYDSN GHD+GEDWRWSYR
Sbjct: 306 EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEDDGADSFDYDSNGGHDKGEDWRWSYR 365

[Close]

BLAST of Cucsat.G2634.T12 vs. ExPASy TrEMBL
Match: A0A5D3BU38 (RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00230 PE=4 SV=1)

HSP 1 Score: 322 bits (826), Expect = 3.03e-107
Identity = 173/180 (96.11%), Postives = 175/180 (97.22%), Query Frame = 0


Query: 1   MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAE 60
           MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDA+MMKQNLPVDDYVYDYYTVK DVEI E
Sbjct: 245 MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDASMMKQNLPVDDYVYDYYTVKTDVEIPE 304

Query: 61  DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDD 120
           DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELES SSNDELEDSDD
Sbjct: 305 DDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDELEDSDD 364

Query: 121 EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR 180
           EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDE+DGADSFDYDSN G DEGEDWRWSYR
Sbjct: 365 EKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEDDGADSFDYDSNGGRDEGEDWRWSYR 424

[Close]

BLAST of Cucsat.G2634.T12 vs. ExPASy TrEMBL
Match: A0A6J1GCH8 (RNA-directed DNA methylation 4 OS=Cucurbita moschata OX=3662 GN=LOC111452902 PE=3 SV=1)

HSP 1 Score: 249 bits (635), Expect = 4.35e-79
Identity = 145/185 (78.38%), Postives = 163/185 (88.11%), Query Frame = 0


Query: 1   MSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAE 60
           M+LEDQSMLSSYLPLLREFIPSAA EIESDI+AN MKQ+LPVDDYVYDYYTVKN+V IAE
Sbjct: 186 MTLEDQSMLSSYLPLLREFIPSAAEEIESDINANTMKQDLPVDDYVYDYYTVKNNVPIAE 245

Query: 61  DDASHPFPLIQVDDLD-HDGPSDSDYETDDSNAENNPCFDYPDE----EELESTSSNDEL 120
           DDAS+PFPLIQVDDLD +DGP DSDYE+DDSNAENNP FDYPDE    EELES S+N+E 
Sbjct: 246 DDASNPFPLIQVDDLDLYDGPDDSDYESDDSNAENNPHFDYPDEASEEEELESESTNEES 305

Query: 121 EDSDDEKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDW 180
           E+ D++KQSSE+N +EED+LSE   V+L EDEIY DFDE+DG DSFDYDSN G +EGEDW
Sbjct: 306 EEDDEDKQSSEANGLEEDDLSEN-GVQLDEDEIYGDFDEDDG-DSFDYDSNGGQEEGEDW 365

[Close]

BLAST of Cucsat.G2634.T12 vs. TAIR 10
Match: AT2G30280.1 (RNA-directed DNA methylation 4 )

HSP 1 Score: 105.5 bits (262), Expect = 4.4e-23
Identity = 70/157 (44.59%), Postives = 109/157 (69.43%), Query Frame = 0


Query: 2   SLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAED 61
           SLEDQ ML+S+LPLLRE IP+AA EIE+DI      Q+   ++YVYDYY V  +++I+ED
Sbjct: 183 SLEDQKMLASFLPLLRECIPTAAEEIEADI------QSSHTEEYVYDYYAVNEEMDISED 242

Query: 62  DASHPFPLIQVDDLDH--DGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSD 121
            + + FPL+ V+D +   DG  +SDY+++DSNAE++P  DYP+EEE E    +D+ +D +
Sbjct: 243 SSKNQFPLVIVEDEEEFCDGSDESDYDSEDSNAEDHPKTDYPEEEEEEEEEDDDDDDDDE 302

Query: 122 DEKQSSESNDVEEDELSEEEKV-ELYEDEIYDDFDEE 156
            E++ SE++D  +DE + +  V  +  D+ +DD+ E+
Sbjct: 303 SEEEKSEASDESDDEETSKRHVRSVLGDDEFDDYAED 333

The following BLAST results are available for this feature:

BLAST of Cucsat.G2634.T12 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYP3	6.3e-22	44.59	RNA-directed DNA methylation 4 OS=Arabidopsis thaliana OX=3702 GN=RDM4 PE=1 SV=1	[more]

BLAST of Cucsat.G2634.T12 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139832.1	1.33e-112	99.44	RNA-directed DNA methylation 4 [Cucumis sativus] >KGN44279.1 hypothetical protei...	[more]
XP_008447118.1	1.27e-107	95.56	PREDICTED: RNA-directed DNA methylation 4-like isoform X2 [Cucumis melo]	[more]
XP_008447116.1	1.36e-107	95.56	PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo] >XP_008...	[more]
KAA0051104.1	6.25e-107	96.11	RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa] >TYK02...	[more]
XP_038885561.1	1.94e-88	82.70	RNA-directed DNA methylation 4 [Benincasa hispida] >XP_038885562.1 RNA-directed ...	[more]

BLAST of Cucsat.G2634.T12 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5Q3	6.43e-113	99.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238430 PE=4 SV=1	[more]
A0A1S3BG45	6.17e-108	95.56	RNA-directed DNA methylation 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A1S4DWJ0	6.58e-108	95.56	RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5D3BU38	3.03e-107	96.11	RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1GCH8	4.35e-79	78.38	RNA-directed DNA methylation 4 OS=Cucurbita moschata OX=3662 GN=LOC111452902 PE=...	[more]

BLAST of Cucsat.G2634.T12 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30280.1	4.4e-23	44.59	RNA-directed DNA methylation 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..180
None	No IPR available	PANTHER	PTHR31934	ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN	coord: 1..180
None	No IPR available	PANTHER	PTHR31934:SF2	RNA-DIRECTED DNA METHYLATION 4	coord: 1..180

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G2634	Cucsat.G2634	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G2634.T12.E1	Cucsat.G2634.T12.E1	exon
Cucsat.G2634.T12.E2	Cucsat.G2634.T12.E2	exon
Cucsat.G2634.T12.E3	Cucsat.G2634.T12.E3	exon
Cucsat.G2634.T12.E4	Cucsat.G2634.T12.E4	exon
Cucsat.G2634.T12.E5	Cucsat.G2634.T12.E5	exon
Cucsat.G2634.T12.E6	Cucsat.G2634.T12.E6	exon
Cucsat.G2634.T12.E7	Cucsat.G2634.T12.E7	exon
Cucsat.G2634.T12.E8	Cucsat.G2634.T12.E8	exon
Cucsat.G2634.T12.E9	Cucsat.G2634.T12.E9	exon
Cucsat.G2634.T12.E10	Cucsat.G2634.T12.E10	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G2634.T12.C1	Cucsat.G2634.T12.C1	CDS
Cucsat.G2634.T12.C2	Cucsat.G2634.T12.C2	CDS
Cucsat.G2634.T12.C3	Cucsat.G2634.T12.C3	CDS
Cucsat.G2634.T12.C4	Cucsat.G2634.T12.C4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G2634.T12	Cucsat.G2634.T12-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006306	DNA methylation
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity