Cucsat.G21253.T4 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G21253.T4
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionserine/arginine-rich splicing factor SR34A
Locationctg910: 36971 .. 39297 (+)
RNA-Seq ExpressionCucsat.G21253.T4
SyntenyCucsat.G21253.T4
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAATTAAGTTGATAATCACATATTTGGAAATTAGGTCCCTTTACCTTATTCCCGCGCCTGTGGCTGTGGTATATTATCTTCTGTTACGACCTAACCCTAAGCCCTTCGTCATCCCGTCCGGTCGCTGCGAAGAAAGCAGAGAAGGATCCCCAAGTCATCAACTCCTCTTTCACCCCTTGCTGAGCCGCAGAGCCGTCATTATCGCTTTTCACTTTCTCGGTGCAGTTTACTTCTTCAGTTTCTCAATCTTTGGTATGTTGCTCTCGTTAGGCGTTGCTTATACTTGTATCTATTCACTGTGTCAGTGTGATATCAAAATTAGCTTCATATCCCTGCTGAGGAATTTCATTACTCAGACTGCTCCGTTTTCGAGTGTTTCACGGTGGGTCGGACGTTGGAAATCTTGGATTTTCATTTTGCTCTGTCAGCTCCCTCGTTTTCTGGAATAGGGTGCGGTATTTAGTTGGTTTAAGGTGAAATACATTTTCCAATAACAACATTCCTCAACTTTTTGGTTCCTCCAATTATTTATTTATTTGTTTCATTCCACTTTCTTGTACCTTGGAAATCATAATTTTGTATTTGACTGTTATCTTCGCACCTGGGCTGTAAGAGCCAGCACTAGAAGGAATCAACAACTTAGTACCATGCCAACGTTTGAGTTTTATTTTCTTAATTATGCCTTTGTGCACCCCGTGTACCGAATTGGCCCAAAGAATTTCTTCAATTATGTCCTATTAGTTGGGATTCATGGACTAAAGATCGTGACTCAGAGACCCACCTTCTTGAATTTTGTTTCCATTTTCTTAATCGATAGAGCATTGTTGTATTTCTGTATCAAATTTTTTTTGTAGTTTTTCCACTGACGACCTTGGATAAGCTGGACCAAGAATATTAGCTACTTATAATATAACACCAATGTTTTGTATGACAATGTCCTTAAATATGTTGATATGAATAGAAGAAAACATTTTCTCTGTTCCTCTTTGGAATCGAATGCAACATAATTGAGGATTTCACCGATCATCTAAAGTTAATCAACAGAGGACATCCTACATATTTTTTCAGGACTGTTTTCTCAATGCTATTAAGAGAGCTGAGTAAGGTAAAATTAATCATGTATGTCACTTACCTCATCTCATGACACAGATGCTTTCTTTATGATAGATGACAAGCGCTTCGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGGATCATTGTGGAGTTATGGGTATTATTTTTATAAATGGAGCTACTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAATTTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATTATACCTTTGGAGCATCTGGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTATTGTTCTGCCTTATTTGGAGAGTAAAATTGATGATGCCAATGGCAGTTGGTTATGGTGGAAGATGGTGTTTCTTTCCTTTTGATGATTCGTTGAACAGATTGATGATGTTATGACATATGTGTGCAGGAATAATATTCAAACTTCCTCGGAGTAATTTGTTGCCTTGAAGATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCTACAAGGTAGATTTCCTTGGTCTTAGCTAATTCTTTTCATGGTGTCTGTGCAAATTGTTATTTTCTCTGTTCATATTTTAGATGTGAAAGCTCCTTGCATTGGTGATCTACAGCTGTTCAAATTTATTTTTGTTTTAGTTCTGAAAAAATCTACTACATGTATTTCCTGGTTTCAGCAGATTTAAGGTTTAATTTGTTTGAACTTACAATTTTTATGTCTACATGATTGATATTTTCTTGGCAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTGGAGGTATCATGTTTTTTTTAATCTTTAGTTTGTACATACTTTTAGCTGTATTTTCAAAGTTCATGATATTATGTGCTTTCTGTTGTTAGTTTGAGAGTGTTAGGGATGCAGAAGATGCAATCAGAGCTCGTGATGGATATAATTTTGATGGTTGTCGTCTAAGGGTATCAACTAAGTTTTCTTTTGCCTTCATTTCCTGATTCCTGTCATTTTTGTTGTATTCATATGTTCAGTTTTTCAAATAGGTTGAGCTTGCACATGGTGGTAGGGGCCCTTCATCTAGTGATCGTCGTAGTAGTTATGGTGGTGGTGGTGGTGG

Coding sequence (CDS)

ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAGTGTTAGGGATGCAGAAGATGCAATCAGAGCTCGTGATGGATATAATTTTGATGGTTGTCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGGGGCCCTTCATCTAGTGATCGTCGTAGTAGTTATGGTGGTGGTGGTGGT

Protein sequence

MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG
Homology
[Close]
BLAST of Cucsat.G21253.T4 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.0e-45
Identity = 83/99 (83.84%), Postives = 90/99 (90.91%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 100
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR  YGGGG
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGG 99

[Close]
BLAST of Cucsat.G21253.T4 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.0e-34
Identity = 71/95 (74.74%), Postives = 81/95 (85.26%), Query Frame = 0 

Query: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
          MSSR++RTIYVGNLP DI++ E+EDLFYKYG I+DI+LKIPPRPP Y FVEFE  RDA+D
Sbjct: 1  MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSS-DRRSS 95
          AI  RDGY+FDGCRLRVE+AHGGR  S S DR SS
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSS 95

[Close]
BLAST of Cucsat.G21253.T4 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.8e-34
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF+  RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 100
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGG 98

[Close]
BLAST of Cucsat.G21253.T4 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-32
Identity = 71/99 (71.72%), Postives = 78/99 (78.79%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRTIYVGNLP DI+E E+EDLF KYG ++ I+LKIPPRPP Y FVEFE  RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 100
           AI  RDGY+FDG  LRVELAHGGR  SS D R SY G G
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-RSSHDARGSYSGRG 98

[Close]
BLAST of Cucsat.G21253.T4 vs. ExPASy Swiss-Prot
Match: Q7SXP4 (Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 5.9e-22
Identity = 54/92 (58.70%), Postives = 64/92 (69.57%), Query Frame = 0 

Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           IYVGNLP DI+  ++ED+FYKYG I DI+LK     P + FVEFE  RDAEDA+ ARDGY
Sbjct: 17  IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76

Query: 69  NFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 101
           ++DG RLRVE    GRG      R  +GGGGG
Sbjct: 77  DYDGYRLRVEFPRSGRGMG----RGGFGGGGG 104

[Close]
BLAST of Cucsat.G21253.T4 vs. NCBI nr
Match: XP_022137780.1 (serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137782.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137783.1 serine/arginine-rich splicing factor SR34A [Momordica charantia])

HSP 1 Score: 206 bits (523), Expect = 2.03e-64
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100

[Close]
BLAST of Cucsat.G21253.T4 vs. NCBI nr
Match: XP_011654574.2 (serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654575.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654577.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654579.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654580.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654581.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_031741184.1 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_031741186.1 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >KAE8647793.1 hypothetical protein Csa_000628 [Cucumis sativus])

HSP 1 Score: 206 bits (523), Expect = 4.53e-64
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100

[Close]
BLAST of Cucsat.G21253.T4 vs. NCBI nr
Match: XP_038907230.1 (serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907232.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907233.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida])

HSP 1 Score: 203 bits (517), Expect = 1.86e-63
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
          MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99
          AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG
Sbjct: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99

[Close]
BLAST of Cucsat.G21253.T4 vs. NCBI nr
Match: XP_022974349.1 (serine/arginine-rich splicing factor SR34A-like isoform X4 [Cucurbita maxima])

HSP 1 Score: 202 bits (515), Expect = 3.63e-63
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100

[Close]
BLAST of Cucsat.G21253.T4 vs. NCBI nr
Match: XP_022974348.1 (serine/arginine-rich splicing factor SR34A-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 202 bits (515), Expect = 3.74e-63
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100

[Close]
BLAST of Cucsat.G21253.T4 vs. ExPASy TrEMBL
Match: A0A6J1C7M8 (serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC111009138 PE=4 SV=1)

HSP 1 Score: 206 bits (523), Expect = 9.84e-65
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100

[Close]
BLAST of Cucsat.G21253.T4 vs. ExPASy TrEMBL
Match: A0A0A0KLR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1)

HSP 1 Score: 206 bits (523), Expect = 1.18e-64
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100

[Close]
BLAST of Cucsat.G21253.T4 vs. ExPASy TrEMBL
Match: A0A6J1IHC8 (serine/arginine-rich splicing factor SR34A-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 202 bits (515), Expect = 1.76e-63
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100

[Close]
BLAST of Cucsat.G21253.T4 vs. ExPASy TrEMBL
Match: A0A6J1IFY5 (serine/arginine-rich splicing factor SR34A-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 202 bits (515), Expect = 1.81e-63
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100

[Close]
BLAST of Cucsat.G21253.T4 vs. ExPASy TrEMBL
Match: A0A6J1IB38 (serine/arginine-rich splicing factor SR34A-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 202 bits (515), Expect = 1.86e-63
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG 100

The following BLAST results are available for this feature:
BLAST of Cucsat.G21253.T4 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A2RVS65.0e-4583.84Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
Q9XFR54.0e-3474.74Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3... [more]
O223158.8e-3470.71Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3... [more]
F4JHI71.3e-3271.72Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
Q7SXP45.9e-2258.70Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV... [more]
BLAST of Cucsat.G21253.T4 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022137780.12.03e-64100.00serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1... [more]
XP_011654574.24.53e-64100.00serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654575.2 ser... [more]
XP_038907230.11.86e-6398.99serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 s... [more]
XP_022974349.13.63e-6398.00serine/arginine-rich splicing factor SR34A-like isoform X4 [Cucurbita maxima][more]
XP_022974348.13.74e-6398.00serine/arginine-rich splicing factor SR34A-like isoform X3 [Cucurbita maxima][more]
BLAST of Cucsat.G21253.T4 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C7M89.84e-65100.00serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A0A0KLR91.18e-64100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1[more]
A0A6J1IHC81.76e-6398.00serine/arginine-rich splicing factor SR34A-like isoform X4 OS=Cucurbita maxima O... [more]
A0A6J1IFY51.81e-6398.00serine/arginine-rich splicing factor SR34A-like isoform X3 OS=Cucurbita maxima O... [more]
A0A6J1IB381.86e-6398.00serine/arginine-rich splicing factor SR34A-like isoform X2 OS=Cucurbita maxima O... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..78
e-value: 3.1E-22
score: 89.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..76
e-value: 2.2E-19
score: 69.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..82
score: 16.568354
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..100
e-value: 6.0E-27
score: 96.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..100
NoneNo IPR availablePANTHERPTHR23147:SF63SERINE/ARGININE-RICH SPLICING FACTOR SR34Acoord: 2..100
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 2..100
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..99

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G21253Cucsat.G21253gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G21253.T4.E1Cucsat.G21253.T4.E1exon
Cucsat.G21253.T4.E2Cucsat.G21253.T4.E2exon
Cucsat.G21253.T4.E3Cucsat.G21253.T4.E3exon
Cucsat.G21253.T4.E4Cucsat.G21253.T4.E4exon
Cucsat.G21253.T4.E5Cucsat.G21253.T4.E5exon
Cucsat.G21253.T4.E6Cucsat.G21253.T4.E6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G21253.T4.C1Cucsat.G21253.T4.C1CDS
Cucsat.G21253.T4.C2Cucsat.G21253.T4.C2CDS
Cucsat.G21253.T4.C3Cucsat.G21253.T4.C3CDS
Cucsat.G21253.T4.C4Cucsat.G21253.T4.C4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G21253.T4Cucsat.G21253.T4-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016607 nuclear speck
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding