Cucsat.G20944.T15 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G20944.T15
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionamino acid transporter AVT6A-like
Locationctg907: 773727 .. 775686 (-)
RNA-Seq ExpressionCucsat.G20944.T15
SyntenyCucsat.G20944.T15
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTCAAAGATCAAAAGTTGAAGAATTTCACAAAATTAAGTAAATGTCTTTTTATTTTTGTTTTATTTCTTTTTAAAAACCATATAAAGGCATTTTCAAATTTTTAGAGGAAAAAATCAGCCGCGAAAAAACGCCGGCGGGGACGGAAGCGGCAACGTTTAGTAAGGTGCAATGATGGAGTTTTCAATCTCCGATCCAACTCTCTGGAGAGAAGCTCTCTCTACTTATTCATCTCAAATCGAAGCCCTAGGCAAGCCCAATTTGGTTTCTCTCGATGATTTTTACCGAAACGAACTTCCTCTTATTCTCCACAAGCGAAACCCTAGCCCTTACATCACTACTTCTGAGCTCTCAAAACTCATGCAATGGAAGCTCACTAGAGGAAAATGGAGGTGCTCAGTGCTCTGTATCACATTCTTTTCATTTAGGTTTCGATGATTATTTATCAATTTTATCTACAACGATTTTACGAATTTCAGGCCTCGTCTCTTGGATTTTGTTTCATCATTGGACGAATCGCTCGTCAAATTGGCCTCTCAGAAGGCCTTCCAATGCCTTCCTGATATTTCCAAAGCCGTTTCTGAACTTACGCCGCTCAAAGGCGTTGGTCCGGCCACTGCCTCGGCGGTTCTTGCTGCCTACGCCCCGGATGTTGCGCCTTTCATGTCCGACGAGGTGAAATCATGATGTATATTTATGCAATCATTATCCGTAGCCATTGATTTCTGCAAAAAGTTTTGAATATCTGTTATGCCTAGATTTCTAACTTATAGTGGTGAAGAAATAGGCTATGGAGGCGGCTCTAGGCAACTCCAAGGATTATTCATTGAAGCAATACTTACTATTCGCAAATAAATTGGAACAAAAAGCCAAGGTCTGTCAGCTTTTTCCATTTCCATCCTTTCAACCTTCATGCGCCAATTTCATTATTTTTTTACATTGACATTGCTGACTTTCTTACTAGCTTCGCTCTGCAAAGGTCTGTTTCTCAAAGCCATGATCGATATGGTTTAGCATTCTAGAATTGAACTGTTGTTTCAAACTTTGAGTGTATTGTATACAAGCATATGCTATAATAAATATAGTCTTGTGTGACTCGTGCTTCATTTGTGAATGTACAATATGTAAAGATCTGCATTTAGTATATTTTCTCGATTTATATATATGGGTTTGTGTATCTTGTGAGATTAACAACCTTGGAACGTGGAATAAAAATGAAGGCGTGAGTTAAACACAAGCTTGATTTCTGCATCTTAGACTAAGCTTAACTTAAAGTCAAACATTCTAATTGTTCAAGGAAGTGGTTACAAATTTTTTCTGTTTGTTGGACTGTTTTGAAACTGTTCCAACGCTCCGAAAGACGAAGTAGGGGTCTCACTATTTGAAGTATCTATTATAGCTAATACATTATTAGTGAATCACGGAAATCTGGATGTTGATTCACTGTTGTTTTACACTTTTTTTTAGTTATTTCTTGACATTGTTCTTTATGGGAGATGGTCATTTGCAGGAATTAAGCTTAGAAGGAGAAATTTTCACACCATCTGATGTAGAGAGGGCTTTGTGGAGTAGGGCTATAGGGGAAAAATTGAAAGGTTCAAAATCACAATTAGATCCTAACAATGGAGGCAAAACTGGAACCAAAAGAAAGAGAAAAACTTCCAAGTGACATCCACTACCAATGGCTTTTGAGTTTTGTACTTCTGGTTTTGGACATGCAGCTGATGTTGGCCTTTCAGGTTTATTCATTACTGCAACAATCTAGCTTCTATTCCTTAACTTACAATGTAAAATTGCAAATACTCCCTTGAAGATCATGTTTGATGGTATCTAATTGAAACTTTCACCCTATGTCCTTTGTTTTTTTTTTTCTTTTTTCTTTTTGGAGATCACTTTCCTAGTTTGAAAATATTTTACAAACGGTTTTGTAATTTCAGCATTATTTGGGTTTTTTTTGTGTG

Coding sequence (CDS)

ATGATGGAGTTTTCAATCTCCGATCCAACTCTCTGGAGAGAAGCTCTCTCTACTTATTCATCTCAAATCGAAGCCCTAGGCAAGCCCAATTTGGTTTCTCTCGATGATTTTTACCGAAACGAACTTCCTCTTATTCTCCACAAGCGAAACCCTAGCCCTTACATCACTACTTCTGAGCTCTCAAAACTCATGCAATGGAAGCTCACTAGAGGAAAATGGAGGCCTCGTCTCTTGGATTTTGTTTCATCATTGGACGAATCGCTCGTCAAATTGGCCTCTCAGAAGGCCTTCCAATGCCTTCCTGATATTTCCAAAGCCGTTTCTGAACTTACGCCGCTCAAAGGCGTTGGTCCGGCCACTGCCTCGGCGGTTCTTGCTGCCTACGCCCCGGATGTTGCGCCTTTCATGTCCGACGAGATTTCTAACTTATAG

Protein sequence

MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEISNL
Homology
[Close]
BLAST of Cucsat.G20944.T15 vs. NCBI nr
Match: XP_004141302.1 (uncharacterized protein LOC101204707 [Cucumis sativus])

HSP 1 Score: 275 bits (704), Expect = 6.08e-92
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 

Query: 1   MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60
           MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL
Sbjct: 1   MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60

Query: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120
           SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT
Sbjct: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120

Query: 121 ASAVLAAYAPDVAPFMSDE 139
           ASAVLAAYAPDVAPFMSDE
Sbjct: 121 ASAVLAAYAPDVAPFMSDE 139

[Close]
BLAST of Cucsat.G20944.T15 vs. NCBI nr
Match: KAE8649898.1 (hypothetical protein Csa_012324 [Cucumis sativus])

HSP 1 Score: 275 bits (704), Expect = 2.33e-91
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 

Query: 1   MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60
           MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL
Sbjct: 1   MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60

Query: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120
           SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT
Sbjct: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120

Query: 121 ASAVLAAYAPDVAPFMSDE 139
           ASAVLAAYAPDVAPFMSDE
Sbjct: 121 ASAVLAAYAPDVAPFMSDE 139

[Close]
BLAST of Cucsat.G20944.T15 vs. NCBI nr
Match: XP_008452685.1 (PREDICTED: uncharacterized protein LOC103493629 isoform X2 [Cucumis melo])

HSP 1 Score: 265 bits (678), Expect = 2.01e-88
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61
           M+FS SDPTLWREALS+YSSQIEALGKPNLVSLDDFYRNELPLILHKR PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDVAPFMSDEISNL 143
           SA+LAAYAPDVAPFMSDE  +L
Sbjct: 121 SAILAAYAPDVAPFMSDEELSL 142

[Close]
BLAST of Cucsat.G20944.T15 vs. NCBI nr
Match: KAA0064474.1 (hypothetical protein E6C27_scaffold255G001890 [Cucumis melo var. makuwa])

HSP 1 Score: 265 bits (677), Expect = 5.42e-88
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0 

Query: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61
           M+FS SDPTLWREALS+YSSQIEALGKPNLVSLDDFYRNELPLILHKR PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDVAPFMSDE 139
           SA+LAAYAPDVAPFMSDE
Sbjct: 121 SAILAAYAPDVAPFMSDE 138

[Close]
BLAST of Cucsat.G20944.T15 vs. NCBI nr
Match: XP_008452684.1 (PREDICTED: uncharacterized protein LOC103493629 isoform X1 [Cucumis melo])

HSP 1 Score: 265 bits (677), Expect = 7.59e-88
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0 

Query: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61
           M+FS SDPTLWREALS+YSSQIEALGKPNLVSLDDFYRNELPLILHKR PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDVAPFMSDE 139
           SA+LAAYAPDVAPFMSDE
Sbjct: 121 SAILAAYAPDVAPFMSDE 138

[Close]
BLAST of Cucsat.G20944.T15 vs. ExPASy TrEMBL
Match: A0A0A0L3W6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G645280 PE=4 SV=1)

HSP 1 Score: 275 bits (704), Expect = 2.94e-92
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 

Query: 1   MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60
           MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL
Sbjct: 1   MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60

Query: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120
           SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT
Sbjct: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120

Query: 121 ASAVLAAYAPDVAPFMSDE 139
           ASAVLAAYAPDVAPFMSDE
Sbjct: 121 ASAVLAAYAPDVAPFMSDE 139

[Close]
BLAST of Cucsat.G20944.T15 vs. ExPASy TrEMBL
Match: A0A1S3BUD6 (uncharacterized protein LOC103493629 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493629 PE=4 SV=1)

HSP 1 Score: 265 bits (678), Expect = 9.71e-89
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61
           M+FS SDPTLWREALS+YSSQIEALGKPNLVSLDDFYRNELPLILHKR PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDVAPFMSDEISNL 143
           SA+LAAYAPDVAPFMSDE  +L
Sbjct: 121 SAILAAYAPDVAPFMSDEELSL 142

[Close]
BLAST of Cucsat.G20944.T15 vs. ExPASy TrEMBL
Match: A0A5A7VB62 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001890 PE=4 SV=1)

HSP 1 Score: 265 bits (677), Expect = 2.62e-88
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0 

Query: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61
           M+FS SDPTLWREALS+YSSQIEALGKPNLVSLDDFYRNELPLILHKR PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDVAPFMSDE 139
           SA+LAAYAPDVAPFMSDE
Sbjct: 121 SAILAAYAPDVAPFMSDE 138

[Close]
BLAST of Cucsat.G20944.T15 vs. ExPASy TrEMBL
Match: A0A1S3BUF7 (uncharacterized protein LOC103493629 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493629 PE=4 SV=1)

HSP 1 Score: 265 bits (677), Expect = 3.67e-88
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0 

Query: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61
           M+FS SDPTLWREALS+YSSQIEALGKPNLVSLDDFYRNELPLILHKR PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDVAPFMSDE 139
           SA+LAAYAPDVAPFMSDE
Sbjct: 121 SAILAAYAPDVAPFMSDE 138

[Close]
BLAST of Cucsat.G20944.T15 vs. ExPASy TrEMBL
Match: A0A5D3D9C6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002390 PE=4 SV=1)

HSP 1 Score: 265 bits (677), Expect = 1.14e-87
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0 

Query: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61
           M+FS SDPTLWREALS+YSSQIEALGKPNLVSLDDFYRNELPLILHKR PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDVAPFMSDE 139
           SA+LAAYAPDVAPFMSDE
Sbjct: 121 SAILAAYAPDVAPFMSDE 138

The following BLAST results are available for this feature:
BLAST of Cucsat.G20944.T15 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G20944.T15 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004141302.16.08e-92100.00uncharacterized protein LOC101204707 [Cucumis sativus][more]
KAE8649898.12.33e-91100.00hypothetical protein Csa_012324 [Cucumis sativus][more]
XP_008452685.12.01e-8894.37PREDICTED: uncharacterized protein LOC103493629 isoform X2 [Cucumis melo][more]
KAA0064474.15.42e-8896.38hypothetical protein E6C27_scaffold255G001890 [Cucumis melo var. makuwa][more]
XP_008452684.17.59e-8896.38PREDICTED: uncharacterized protein LOC103493629 isoform X1 [Cucumis melo][more]
BLAST of Cucsat.G20944.T15 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3W62.94e-92100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G645280 PE=4 SV=1[more]
A0A1S3BUD69.71e-8994.37uncharacterized protein LOC103493629 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7VB622.62e-8896.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3BUF73.67e-8896.38uncharacterized protein LOC103493629 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5D3D9C61.14e-8796.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21521UNCHARACTERIZEDcoord: 2..140

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G20944Cucsat.G20944gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G20944.T15.E1Cucsat.G20944.T15.E1exon
Cucsat.G20944.T15.E2Cucsat.G20944.T15.E2exon
Cucsat.G20944.T15.E3Cucsat.G20944.T15.E3exon
Cucsat.G20944.T15.E4Cucsat.G20944.T15.E4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G20944.T15.C3Cucsat.G20944.T15.C3CDS
Cucsat.G20944.T15.C2Cucsat.G20944.T15.C2CDS
Cucsat.G20944.T15.C1Cucsat.G20944.T15.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G20944.T15Cucsat.G20944.T15-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0003333 amino acid transmembrane transport
biological_process GO:0009734 auxin-activated signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015171 amino acid transmembrane transporter activity
molecular_function GO:0015293 symporter activity