Cucsat.G20944.T12 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G20944.T12
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	amino acid transporter AVT6A-like
Location	ctg907: 773813 .. 775686 (-)
RNA-Seq Expression	Cucsat.G20944.T12
Synteny	Cucsat.G20944.T12

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCAAAGATCAAAAGTTGAAGAATTTCACAAAATTAAGTAAATGTCTTTTTATTTTTGTTTTATTTCTTTTTAAAAACCATATAAAGGCATTTTCAAATTTTTAGAGGAAAAAATCAGCCGCGAAAAAACGCCGGCGGGGACGGAAGCGGCAACGTTTAGTAAGGTGCAATGATGGAGTTTTCAATCTCCGATCCAACTCTCTGGAGAGAAGCTCTCTCTACTTATTCATCTCAAATCGAAGCCCTAGGCAAGCCCAATTTGGTTTCTCTCGATGATTTTTACCGAAACGAACTTCCTCTTATTCTCCACAAGCGAAACCCTAGCCCTTACATCACTACTTCTGAGCTCTCAAAACTCATGCAATGGAAGCTCACTAGAGGAAAATGGAGGTGCTCAGTGCTCTGTATCACATTCTTTTCATTTAGGTTTCGATGATTATTTATCAATTTTATCTACAACGATTTTACGAATTTCAGGCCTCGTCTCTTGGATTTTGTTTCATCATTGGACGAATCGCTCGTCAAATTGGCCTCTCAGAAGGCCTTCCAATGCCTTCCTGATATTTCCAAAGCCGTTTCTGAACTTACGCCGCTCAAAGGCGTTGGTCCGGCCACTGCCTCGGCGGTTCTTGCTGCCTACGCCCCGGATGTTGCGCCTTTCATGTCCGACGAGGTGAAATCATGATGTATATTTATGCAATCATTATCCGTAGCCATTGATTTCTGCAAAAAGTTTTGAATATCTGTTATGCCTAGATTTCTAACTTATAGTGGTGAAGAAATAGGCTATGGAGGCGGCTCTAGGCAACTCCAAGGATTATTCATTGAAGCAATACTTACTATTCGCAAATAAATTGGAACAAAAAGCCAAGGTCTGTCAGCTTTTTCCATTTCCATCCTTTCAACCTTCATGCGCCAATTTCATTATTTTTTTACATTGACATTGCTGACTTTCTTACTAGCTTCGCTCTGCAAAGGTCTGTTTCTCAAAGCCATGATCGATATGGTTTAGCATTCTAGAATTGAACTGTTGTTTCAAACTTTGAGTGTATTGTATACAAGCATATGCTATAATAAATATAGTCTTGTGTGACTCGTGCTTCATTTGTGAATGTACAATATGTAAAGATCTGCATTTAGTATATTTTCTCGATTTATATATATGGGTTTGTGTATCTTGTGAGATTAACAACCTTGGAACGTGGAATAAAAATGAAGGCGTGAGTTAAACACAAGCTTGATTTCTGCATCTTAGACTAAGCTTAACTTAAAGTCAAACATTCTAATTGTTCAAGGAAGTGGTTACAAATTTTTTCTGTTTGTTGGACTGTTTTGAAACTGTTCCAACGCTCCGAAAGACGAAGTAGGGGTCTCACTATTTGAAGTATCTATTATAGCTAATACATTATTAGTGAATCACGGAAATCTGGATGTTGATTCACTGTTGTTTTACACTTTTTTTTAGTTATTTCTTGACATTGTTCTTTATGGGAGATGGTCATTTGCAGGAATTAAGCTTAGAAGGAGAAATTTTCACACCATCTGATGTAGAGAGGGCTTTGTGGAGTAGGGCTATAGGGGAAAAATTGAAAGGTTCAAAATCACAATTAGATCCTAACAATGGAGGCAAAACTGGAACCAAAAGAAAGAGAAAAACTTCCAAGTGACATCCACTACCAATGGCTTTTGAGTTTTGTACTTCTGGTTTTGGACATGCAGCTGATGTTGGCCTTTCAGGTTTATTCATTACTGCAACAATCTAGCTTCTATTCCTTAACTTACAATGTAAAATTGCAAATACTCCCTTGAAGATCATGTTTGATGGTATCTAATTGAAACTTTCACCCTATGTCCTTTGTTTTTTTTTTTCTTT

Coding sequence (CDS)

ATGATGGAGTTTTCAATCTCCGATCCAACTCTCTGGAGAGAAGCTCTCTCTACTTATTCATCTCAAATCGAAGCCCTAGGCAAGCCCAATTTGGTTTCTCTCGATGATTTTTACCGAAACGAACTTCCTCTTATTCTCCACAAGCGAAACCCTAGCCCTTACATCACTACTTCTGAGCTCTCAAAACTCATGCAATGGAAGCTCACTAGAGGAAAATGGAGGCCTCGTCTCTTGGATTTTGTTTCATCATTGGACGAATCGCTCGTCAAATTGGCCTCTCAGAAGGCCTTCCAATGCCTTCCTGATATTTCCAAAGCCGTTTCTGAACTTACGCCGCTCAAAGGCGTTGGTCCGGCCACTGCCTCGGCGGTTCTTGCTGCCTACGCCCCGGATGTTGCGCCTTTCATGTCCGACGAGGTGAAATCATGA

Protein sequence

MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATASAVLAAYAPDVAPFMSDEVKS

Homology

[Close]

BLAST of Cucsat.G20944.T12 vs. NCBI nr
Match: XP_004141302.1 (uncharacterized protein LOC101204707 [Cucumis sativus])

HSP 1 Score: 275 bits (703), Expect = 8.28e-92
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60
           MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL
Sbjct: 1   MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60

Query: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120
           SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT
Sbjct: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120

Query: 121 ASAVLAAYAPDVAPFMSDE 139
           ASAVLAAYAPDVAPFMSDE
Sbjct: 121 ASAVLAAYAPDVAPFMSDE 139

[Close]

BLAST of Cucsat.G20944.T12 vs. NCBI nr
Match: KAE8649898.1 (hypothetical protein Csa_012324 [Cucumis sativus])

HSP 1 Score: 275 bits (703), Expect = 3.17e-91
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60
           MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL
Sbjct: 1   MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60

Query: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120
           SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT
Sbjct: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120

Query: 121 ASAVLAAYAPDVAPFMSDE 139
           ASAVLAAYAPDVAPFMSDE
Sbjct: 121 ASAVLAAYAPDVAPFMSDE 139

[Close]

BLAST of Cucsat.G20944.T12 vs. NCBI nr
Match: XP_008452685.1 (PREDICTED: uncharacterized protein LOC103493629 isoform X2 [Cucumis melo])

HSP 1 Score: 265 bits (676), Expect = 3.88e-88
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61
           M+FS SDPTLWREALS+YSSQIEALGKPNLVSLDDFYRNELPLILHKR PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDVAPFMSDE 139
           SA+LAAYAPDVAPFMSDE
Sbjct: 121 SAILAAYAPDVAPFMSDE 138

[Close]

BLAST of Cucsat.G20944.T12 vs. NCBI nr
Match: KAA0064474.1 (hypothetical protein E6C27_scaffold255G001890 [Cucumis melo var. makuwa])

HSP 1 Score: 265 bits (676), Expect = 7.39e-88
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61
           M+FS SDPTLWREALS+YSSQIEALGKPNLVSLDDFYRNELPLILHKR PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDVAPFMSDE 139
           SA+LAAYAPDVAPFMSDE
Sbjct: 121 SAILAAYAPDVAPFMSDE 138

[Close]

BLAST of Cucsat.G20944.T12 vs. NCBI nr
Match: XP_008452684.1 (PREDICTED: uncharacterized protein LOC103493629 isoform X1 [Cucumis melo])

HSP 1 Score: 265 bits (676), Expect = 1.03e-87
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61
           M+FS SDPTLWREALS+YSSQIEALGKPNLVSLDDFYRNELPLILHKR PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDVAPFMSDE 139
           SA+LAAYAPDVAPFMSDE
Sbjct: 121 SAILAAYAPDVAPFMSDE 138

[Close]

BLAST of Cucsat.G20944.T12 vs. ExPASy TrEMBL
Match: A0A0A0L3W6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G645280 PE=4 SV=1)

HSP 1 Score: 275 bits (703), Expect = 4.01e-92
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60
           MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL
Sbjct: 1   MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60

Query: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120
           SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT
Sbjct: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120

Query: 121 ASAVLAAYAPDVAPFMSDE 139
           ASAVLAAYAPDVAPFMSDE
Sbjct: 121 ASAVLAAYAPDVAPFMSDE 139

[Close]

BLAST of Cucsat.G20944.T12 vs. ExPASy TrEMBL
Match: A0A1S3BUD6 (uncharacterized protein LOC103493629 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493629 PE=4 SV=1)

HSP 1 Score: 265 bits (676), Expect = 1.88e-88
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61
           M+FS SDPTLWREALS+YSSQIEALGKPNLVSLDDFYRNELPLILHKR PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDVAPFMSDE 139
           SA+LAAYAPDVAPFMSDE
Sbjct: 121 SAILAAYAPDVAPFMSDE 138

[Close]

BLAST of Cucsat.G20944.T12 vs. ExPASy TrEMBL
Match: A0A5A7VB62 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001890 PE=4 SV=1)

HSP 1 Score: 265 bits (676), Expect = 3.58e-88
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61
           M+FS SDPTLWREALS+YSSQIEALGKPNLVSLDDFYRNELPLILHKR PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDVAPFMSDE 139
           SA+LAAYAPDVAPFMSDE
Sbjct: 121 SAILAAYAPDVAPFMSDE 138

[Close]

BLAST of Cucsat.G20944.T12 vs. ExPASy TrEMBL
Match: A0A1S3BUF7 (uncharacterized protein LOC103493629 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493629 PE=4 SV=1)

HSP 1 Score: 265 bits (676), Expect = 5.01e-88
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61
           M+FS SDPTLWREALS+YSSQIEALGKPNLVSLDDFYRNELPLILHKR PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDVAPFMSDE 139
           SA+LAAYAPDVAPFMSDE
Sbjct: 121 SAILAAYAPDVAPFMSDE 138

[Close]

BLAST of Cucsat.G20944.T12 vs. ExPASy TrEMBL
Match: A0A5D3D9C6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002390 PE=4 SV=1)

HSP 1 Score: 265 bits (676), Expect = 1.56e-87
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 2   MEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELS 61
           M+FS SDPTLWREALS+YSSQIEALGKPNLVSLDDFYRNELPLILHKR PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDVAPFMSDE 139
           SA+LAAYAPDVAPFMSDE
Sbjct: 121 SAILAAYAPDVAPFMSDE 138

The following BLAST results are available for this feature:

BLAST of Cucsat.G20944.T12 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G20944.T12 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141302.1	8.28e-92	100.00	uncharacterized protein LOC101204707 [Cucumis sativus]	[more]
KAE8649898.1	3.17e-91	100.00	hypothetical protein Csa_012324 [Cucumis sativus]	[more]
XP_008452685.1	3.88e-88	96.38	PREDICTED: uncharacterized protein LOC103493629 isoform X2 [Cucumis melo]	[more]
KAA0064474.1	7.39e-88	96.38	hypothetical protein E6C27_scaffold255G001890 [Cucumis melo var. makuwa]	[more]
XP_008452684.1	1.03e-87	96.38	PREDICTED: uncharacterized protein LOC103493629 isoform X1 [Cucumis melo]	[more]

BLAST of Cucsat.G20944.T12 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3W6	4.01e-92	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G645280 PE=4 SV=1	[more]
A0A1S3BUD6	1.88e-88	96.38	uncharacterized protein LOC103493629 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7VB62	3.58e-88	96.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BUF7	5.01e-88	96.38	uncharacterized protein LOC103493629 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3D9C6	1.56e-87	96.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21521	UNCHARACTERIZED	coord: 2..140

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G20944	Cucsat.G20944	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G20944.T12.E1	Cucsat.G20944.T12.E1	exon
Cucsat.G20944.T12.E2	Cucsat.G20944.T12.E2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G20944.T12.C2	Cucsat.G20944.T12.C2	CDS
Cucsat.G20944.T12.C1	Cucsat.G20944.T12.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G20944.T12	Cucsat.G20944.T12-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0003333	amino acid transmembrane transport
biological_process	GO:0009734	auxin-activated signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015171	amino acid transmembrane transporter activity
molecular_function	GO:0015293	symporter activity