Cucsat.G16774.T3 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16774.T3
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	15-cis-zeta-carotene isomerase, chloroplastic
Location	ctg24: 930660 .. 933672 (-)
RNA-Seq Expression	Cucsat.G16774.T3
Synteny	Cucsat.G16774.T3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGACATGACCATTTTTTGTAAGTCAATGATTGGACCCATTGCCGAAATTGTTGTAGTGAAAGAAACGTTTCTCCCAAGTAATTTGCATATAGAGAATTGGTATCACTTATGAGAGTAGCGTAGGCCTGCAATTTGCATATACATAATTCCATAAAATCCAAAACTTCCTTTGAAGAGCACCAATTACCTCAGATTCTCTCTTCCATTTTCCATTCCTCGATTCCTGATTGCCTTCAACCCTCACTTCCCACTCACAACTACCTCACTATTCAGTGCTCCAATGGCGGTTGCCTCCGCCACTCCCCCTTTTTCCCCTCCATTTCTCTCCTCCCCTCGCCATCGCCATCGCCGTCCTGATGCAATTTCCTTCCGACCCTTTTCAATTTCGACCCCCAATTGCCTTCAGCAACTTCCCCTTTCTCTCAATTCCTTCCACATTTTCCGACGTCCTCGATTGGTCGCCGAGGCTTCTATTGGAGACAGGGAGAGTGGTGGGTCGACCTCTGTCTCCGACGACGAGGGCTTTGTCGGCGAGGACGCTGCTGCTTTTGATCTTTCCGAGCAGAAATTGACTTCGTGGGTTTATTTCACTGTGATTTTGGGGGTTGTTCTGTTCGTGTTGAATGTTGTTTGGATTGATAACTCTGCTGGGGGTGTTGGGAAGGCCTTTCTGGATGCTGTTTCTGGAATTTCGGATAGTCATGAGGTTCACTTTTTTTGTGTTACTTCGTTTTGTTTAATTTGATTCACATTTGGAGATGAAGCCTGTATAGAAATAGTTCCATTGCCATAGAAGCAGTGTTCATAGTAATTCTGCTGTTTTATAGTTTATATATAGTGTTTCTCTCAGATGGTTTGTACGTGTTGGGTTCGTTGCTAAGACTTTTAGAAAGTTCAATTTTGTCCTTAATTTTAGTAAACTTCTAATGAATATGTAGAAGTTCTAAAATTGTATTCATTTGTAGCATTTTTGGGCTGTCTTGTGATATAGGAATATTTCCAATTCAGTTAGTAAAATATGTACATAACTCACAGATTTTGATAGAAAAATCAATCTTGATACATAAAGGATTGTATTGAAACTACGATCTTATTTGAACGAGATCTGTTTTGTAGGTTGTATATCTCTGTCCTTGAGTTCTAAAGGATTGTATTGAAACTGATTAAGGTCTTGTATGTCTGCTGTATATGAATGATTGGGGTGGATGAACATGGCATAAGGATTATATTGCTCATGGTTTAATGTTGAATTTTGGAAACTCACTTGATTATTTGATTATGAATCTAAGTCTTGAAACTTTCTTCCGTAGGTTGTGATGTTGCTCCTCATATTCATTTTTGCCATTGTCCATAGTGGTTTGGCCAGTCTCCGAGATCAGGGCGAGAAGCTTGTCGGGGAACGAGCTTTTCGGGTTTTGTTTGCTGGAGTTTCTCTGCCATTGGCTGTTAGCACTGTGGTAGGTACCTTACCGCTTCTTTTCCCTTGAACTTGATGCAGTAAATGCAATGTTCTTGAAGTTACCTCAGTACCTTTTATTCATTCAAGTTTTCCGAATGCACACGCATATTGACTTGTTTACACTAAGGAATTATATTCAGGTGTATTTCATTAACCATCGATACGATGGAGTACAGTTATGGCAGCTCCAAAGTGTTCCCCTACTGCATCAACTTGTGTGGCTTAGCTCGTTTGTCTCCTTCATCTTTCTCTATCCTTCAACTTTTAATCTGCTGGAGGTTGCAGCAGTTGATAAACCAAAAATGCACCTTTGGGAAACAGGCATCATTAGAATAACTAGACATCCACAGGTTTGTTCGTGTTTCATTATCTTCAATGTTCATTTCATTTCATTATAATATCCGGGTTCTATTGTTGAGTAGTACTTGGGTGCAGTCTAGGTTGCACCATGTCCATGAGATGACTGTCAATTAAAAATGAAAAAAAATAGAACATAAGACAATCGTTTTTAAAAAGTAAATTTGCTACATGGCAGCTTGTGATTTGCACTTGGGTGGGTTGCACAAGATAGTTGCATCCTAGGATGCTCCCAACTATTTTTCTTTATTAGTGCTAGTTTGCTGGCTTCGACTTGAATTCATCGATGAACTTGAGTTTTAATTTTGTGTACCACTTGAAATACACGTCTCATAGACAAATTTCTTATGTCAAGTGTCCTCAAATAGTAGGGTTGAACAATAAATTAGCCAAATGAAAGCTTAGAAACCATAATATAGGATTTAAAACCAAACTGTATATTGCATTAGACGAGTTTTTTCAGAAGTCACATTTGGTCTTCTAGAATAACACGAGAGAAGATGAAATCCAATTTCGTCCCTCTCTGTTTCCTGATAAAATGTTGATACTTCATGAGGGGAGGTTAAAAAAGACCACCAACCATGAAAAGTCAAACTGACCTGGCAAATCTTGGTTTTCTTTTAAGATGGTTGGACAGGTGATATGGTGTCTTGCTCATACAATCTGGATTGGGAACTCTGTTGCAGTAGCAGCTTCCATTGGTTTGATAGGACATCATCTGTTTGGCGTATGGAACGGAGACAGGAGGCTAGCCAAGCGATATGGGGCAGATTTTGAAGCCGTGAAAAGCCGAACAAGCATCATCCCATTCGCTGCCATTGTGGATGGTCGTCAAAAGTTGCCCGACGATTACTACAAGGAGTTCCTTCGCTTGCCATATCTATCAATCACTGCACTAACAATAGGAGCTTACCTTGCTCACCCTCTTATGCAAGCTGCTAGTTTCAGGCTTCATTGGTAACTCCATTTCTATGCAGCTAACTCTCCTGTTGTATCATAAATACTCAAATGTATTTCATTTGTTGTATAAACCAAAGCATAGAGCATACAGAAATGTGAGGCTATAGTCATAGCCTTTTTTATTACAAAGTTATGAAATAAAAATCATTCAACCTTATAAAACTATAAAAATGCCCTTCAAGAAAAATTATTCGTTGGGCCTTAAAATATGCTTAACTCGAATAACAACTGGAT

Coding sequence (CDS)

ATGTTCTTGAAGTTACCTCAGTACCTTTTATTCATTCAAGTTTTCCGAATGCACACGCATATTGACTTGTTTACACTAAGGAATTATATTCAGGTGTATTTCATTAACCATCGATACGATGGAGTACAGTTATGGCAGCTCCAAAGTGTTCCCCTACTGCATCAACTTGTGTGGCTTAGCTCGTTTGTCTCCTTCATCTTTCTCTATCCTTCAACTTTTAATCTGCTGGAGGTTGCAGCAGTTGATAAACCAAAAATGCACCTTTGGGAAACAGGCATCATTAGAATAACTAGACATCCACAGATGGTTGGACAGGTGATATGGTGTCTTGCTCATACAATCTGGATTGGGAACTCTGTTGCAGTAGCAGCTTCCATTGGTTTGATAGGACATCATCTGTTTGGCGTATGGAACGGAGACAGGAGGCTAGCCAAGCGATATGGGGCAGATTTTGAAGCCGTGAAAAGCCGAACAAGCATCATCCCATTCGCTGCCATTGTGGATGGTCGTCAAAAGTTGCCCGACGATTACTACAAGGAGTTCCTTCGCTTGCCATATCTATCAATCACTGCACTAACAATAGGAGCTTACCTTGCTCACCCTCTTATGCAAGCTGCTAGTTTCAGGCTTCATTGGTAA

Protein sequence

MFLKLPQYLLFIQVFRMHTHIDLFTLRNYIQVYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW

Homology

[Close]

BLAST of Cucsat.G16774.T3 vs. ExPASy Swiss-Prot
Match: Q9SAC0 (15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=Z-ISO PE=1 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 4.1e-89
Identity = 146/181 (80.66%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 32  VYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWET 91
           VYFINHRYDG QLWQLQ VP +H+ +W+++FVSF FLYPSTFNLLEVAAVDKPKMHLWET
Sbjct: 187 VYFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFFFLYPSTFNLLEVAAVDKPKMHLWET 246

Query: 92  GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 151
           GI+RITRHPQMVGQ++WCLAHT+WIGN+VA +AS+GLI HHLFG WNGDRRLAKRYG DF
Sbjct: 247 GIMRITRHPQMVGQIVWCLAHTLWIGNTVAASASLGLIAHHLFGAWNGDRRLAKRYGEDF 306

Query: 152 EAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH 211
           E++K RTS+IPFAAI +GRQ LP+DYYKEF+RLPYL+ITALT+GAY AHPLMQ ASFRLH
Sbjct: 307 ESIKKRTSVIPFAAIFEGRQVLPEDYYKEFVRLPYLAITALTVGAYFAHPLMQGASFRLH 366

Query: 212 W 213
           W
Sbjct: 367 W 367

[Close]

BLAST of Cucsat.G16774.T3 vs. ExPASy Swiss-Prot
Match: B4FHU1 (15-cis-zeta-carotene isomerase, chloroplastic OS=Zea mays OX=4577 PE=1 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 8.0e-85
Identity = 140/181 (77.35%), Postives = 162/181 (89.50%), Query Frame = 0


Query: 32  VYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWET 91
           VYFINHRYDG QLWQ+Q +  +H+L+W SSF+SF FLYPSTFNLLEVAAVDKPK+H+WET
Sbjct: 186 VYFINHRYDGTQLWQVQGITGIHELLWFSSFISFFFLYPSTFNLLEVAAVDKPKLHMWET 245

Query: 92  GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 151
           GI+RITRHPQMVGQVIWCLAHT+WIGNSVAVAAS+GLI HHLFG WNGDRRL  RYG  F
Sbjct: 246 GIMRITRHPQMVGQVIWCLAHTLWIGNSVAVAASVGLISHHLFGAWNGDRRLLSRYGEAF 305

Query: 152 EAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH 211
           E +K RTS++PFAAI+DGRQKLP DY+KEF RLPY++IT LT+GAY AHPLMQA+S++L 
Sbjct: 306 EVLKKRTSVMPFAAIIDGRQKLPKDYHKEFFRLPYVAITMLTLGAYFAHPLMQASSYQLP 365

Query: 212 W 213
           W
Sbjct: 366 W 366

[Close]

BLAST of Cucsat.G16774.T3 vs. NCBI nr
Match: KAG7029085.1 (15-cis-zeta-carotene isomerase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 379 bits (974), Expect = 4.27e-129
Identity = 180/195 (92.31%), Postives = 189/195 (96.92%), Query Frame = 0


Query: 18  HTHIDLFTLRNYIQVYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLE 77
           H HIDLFTLR+ IQVYFINHRYDGVQLWQL S+P LHQLVWLSSF+SF FLYPSTFNLLE
Sbjct: 210 HPHIDLFTLRSCIQVYFINHRYDGVQLWQLHSIPGLHQLVWLSSFISFFFLYPSTFNLLE 269

Query: 78  VAAVDKPKMHLWETGIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVW 137
           VAAVDKPKMHLWETGI+RITRHPQMVGQVIWCLAHT+WIGNSVAVAASIGLIGHHLFGVW
Sbjct: 270 VAAVDKPKMHLWETGIMRITRHPQMVGQVIWCLAHTVWIGNSVAVAASIGLIGHHLFGVW 329

Query: 138 NGDRRLAKRYGADFEAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAY 197
           NGDRRLAKRYGADFEAVK RTS++PFAAI+DGRQKLPDDYYKEF+RLPYLSITALTIGAY
Sbjct: 330 NGDRRLAKRYGADFEAVKRRTSVVPFAAILDGRQKLPDDYYKEFIRLPYLSITALTIGAY 389

Query: 198 LAHPLMQAASFRLHW 212
           LAHPLMQAASFRLHW
Sbjct: 390 LAHPLMQAASFRLHW 404

[Close]

BLAST of Cucsat.G16774.T3 vs. NCBI nr
Match: XP_004152101.1 (15-cis-zeta-carotene isomerase, chloroplastic isoform X1 [Cucumis sativus] >KGN53082.1 hypothetical protein Csa_015404 [Cucumis sativus])

HSP 1 Score: 371 bits (953), Expect = 2.27e-126
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 32  VYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWET 91
           VYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWET
Sbjct: 192 VYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWET 251

Query: 92  GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 151
           GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF
Sbjct: 252 GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 311

Query: 152 EAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH 211
           EAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH
Sbjct: 312 EAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH 371

[Close]

BLAST of Cucsat.G16774.T3 vs. NCBI nr
Match: XP_038882546.1 (15-cis-zeta-carotene isomerase, chloroplastic [Benincasa hispida])

HSP 1 Score: 362 bits (929), Expect = 9.39e-123
Identity = 175/181 (96.69%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 32  VYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWET 91
           VYFINHRYDGVQLWQLQSVP LHQLVWLSSFVSF FLYPSTFNLLEVAAVDKPKMHLWET
Sbjct: 190 VYFINHRYDGVQLWQLQSVPGLHQLVWLSSFVSFFFLYPSTFNLLEVAAVDKPKMHLWET 249

Query: 92  GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 151
           GIIRITRHPQMVGQV+WCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF
Sbjct: 250 GIIRITRHPQMVGQVMWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 309

Query: 152 EAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH 211
           EAVK RTSI+PFAAIVDGRQKLPDDYYKEF+RLPYLSITALTIGAYLAHPLMQAASFRLH
Sbjct: 310 EAVKRRTSIVPFAAIVDGRQKLPDDYYKEFVRLPYLSITALTIGAYLAHPLMQAASFRLH 369

[Close]

BLAST of Cucsat.G16774.T3 vs. NCBI nr
Match: XP_008453974.1 (PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Cucumis melo])

HSP 1 Score: 362 bits (928), Expect = 1.33e-122
Identity = 176/181 (97.24%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 32  VYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWET 91
           VYFINHRYDGVQLWQLQSVP LHQLVWLSSFVSF FLYPSTFNLLEVAAVDKPKMHLWET
Sbjct: 190 VYFINHRYDGVQLWQLQSVPGLHQLVWLSSFVSFFFLYPSTFNLLEVAAVDKPKMHLWET 249

Query: 92  GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 151
           GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYG DF
Sbjct: 250 GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGVDF 309

Query: 152 EAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH 211
           EAV+ RTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH
Sbjct: 310 EAVQRRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH 369

[Close]

BLAST of Cucsat.G16774.T3 vs. NCBI nr
Match: XP_022145219.1 (15-cis-zeta-carotene isomerase, chloroplastic [Momordica charantia])

HSP 1 Score: 358 bits (919), Expect = 4.94e-121
Identity = 171/181 (94.48%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 32  VYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWET 91
           VYFINHRYDGVQLWQLQSVP +HQLVW SSF+SF FLYPSTFNLLEVAAVDKPKMHLWET
Sbjct: 204 VYFINHRYDGVQLWQLQSVPGVHQLVWFSSFISFFFLYPSTFNLLEVAAVDKPKMHLWET 263

Query: 92  GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 151
           GIIRITRHPQMVGQV+WCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF
Sbjct: 264 GIIRITRHPQMVGQVMWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 323

Query: 152 EAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH 211
           EAVK RTS+IPFAAIVDGRQKLPDDYYKEF+RLPYLSITALT+GAYLAHPLMQAASFRLH
Sbjct: 324 EAVKRRTSVIPFAAIVDGRQKLPDDYYKEFIRLPYLSITALTMGAYLAHPLMQAASFRLH 383

[Close]

BLAST of Cucsat.G16774.T3 vs. ExPASy TrEMBL
Match: A0A0A0KXF1 (NnrU domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015720 PE=4 SV=1)

HSP 1 Score: 371 bits (953), Expect = 1.10e-126
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 32  VYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWET 91
           VYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWET
Sbjct: 192 VYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWET 251

Query: 92  GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 151
           GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF
Sbjct: 252 GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 311

Query: 152 EAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH 211
           EAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH
Sbjct: 312 EAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH 371

[Close]

BLAST of Cucsat.G16774.T3 vs. ExPASy TrEMBL
Match: A0A1S3BYR9 (15-cis-zeta-carotene isomerase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494534 PE=4 SV=1)

HSP 1 Score: 362 bits (928), Expect = 6.45e-123
Identity = 176/181 (97.24%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 32  VYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWET 91
           VYFINHRYDGVQLWQLQSVP LHQLVWLSSFVSF FLYPSTFNLLEVAAVDKPKMHLWET
Sbjct: 190 VYFINHRYDGVQLWQLQSVPGLHQLVWLSSFVSFFFLYPSTFNLLEVAAVDKPKMHLWET 249

Query: 92  GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 151
           GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYG DF
Sbjct: 250 GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGVDF 309

Query: 152 EAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH 211
           EAV+ RTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH
Sbjct: 310 EAVQRRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH 369

[Close]

BLAST of Cucsat.G16774.T3 vs. ExPASy TrEMBL
Match: A0A6J1CUK6 (15-cis-zeta-carotene isomerase, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014723 PE=4 SV=1)

HSP 1 Score: 358 bits (919), Expect = 2.39e-121
Identity = 171/181 (94.48%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 32  VYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWET 91
           VYFINHRYDGVQLWQLQSVP +HQLVW SSF+SF FLYPSTFNLLEVAAVDKPKMHLWET
Sbjct: 204 VYFINHRYDGVQLWQLQSVPGVHQLVWFSSFISFFFLYPSTFNLLEVAAVDKPKMHLWET 263

Query: 92  GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 151
           GIIRITRHPQMVGQV+WCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF
Sbjct: 264 GIIRITRHPQMVGQVMWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 323

Query: 152 EAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH 211
           EAVK RTS+IPFAAIVDGRQKLPDDYYKEF+RLPYLSITALT+GAYLAHPLMQAASFRLH
Sbjct: 324 EAVKRRTSVIPFAAIVDGRQKLPDDYYKEFIRLPYLSITALTMGAYLAHPLMQAASFRLH 383

[Close]

BLAST of Cucsat.G16774.T3 vs. ExPASy TrEMBL
Match: A0A6J1I3V9 (15-cis-zeta-carotene isomerase, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470740 PE=4 SV=1)

HSP 1 Score: 358 bits (918), Expect = 2.52e-121
Identity = 169/181 (93.37%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 32  VYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWET 91
           VYFINHRYDGVQLWQL S+P LHQLVWLSSF+SF FLYPSTFNLLEVAAVDKPKMHLWET
Sbjct: 195 VYFINHRYDGVQLWQLHSIPGLHQLVWLSSFISFFFLYPSTFNLLEVAAVDKPKMHLWET 254

Query: 92  GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 151
           GI+RITRHPQMVGQVIWCLAHT+WIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF
Sbjct: 255 GIMRITRHPQMVGQVIWCLAHTVWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 314

Query: 152 EAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH 211
           EAVK RTS++PFAAI+DGRQKLPDDYYKEF+RLPYLSITALTIGAYLAHPLMQAASFRLH
Sbjct: 315 EAVKRRTSVVPFAAILDGRQKLPDDYYKEFIRLPYLSITALTIGAYLAHPLMQAASFRLH 374

[Close]

BLAST of Cucsat.G16774.T3 vs. ExPASy TrEMBL
Match: A0A6J1F2X1 (15-cis-zeta-carotene isomerase, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111439180 PE=4 SV=1)

HSP 1 Score: 358 bits (918), Expect = 2.52e-121
Identity = 169/181 (93.37%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 32  VYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWET 91
           VYFINHRYDGVQLWQL S+P LHQLVWLSSF+SF FLYPSTFNLLEVAAVDKPKMHLWET
Sbjct: 195 VYFINHRYDGVQLWQLHSIPGLHQLVWLSSFISFFFLYPSTFNLLEVAAVDKPKMHLWET 254

Query: 92  GIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 151
           GI+RITRHPQMVGQVIWCLAHT+WIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF
Sbjct: 255 GIMRITRHPQMVGQVIWCLAHTVWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADF 314

Query: 152 EAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLH 211
           EAVK RTS++PFAAI+DGRQKLPDDYYKEF+RLPYLSITALTIGAYLAHPLMQAASFRLH
Sbjct: 315 EAVKRRTSVVPFAAILDGRQKLPDDYYKEFIRLPYLSITALTIGAYLAHPLMQAASFRLH 374

The following BLAST results are available for this feature:

BLAST of Cucsat.G16774.T3 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAC0	4.1e-89	80.66	15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
B4FHU1	8.0e-85	77.35	15-cis-zeta-carotene isomerase, chloroplastic OS=Zea mays OX=4577 PE=1 SV=1	[more]

BLAST of Cucsat.G16774.T3 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029085.1	4.27e-129	92.31	15-cis-zeta-carotene isomerase, chloroplastic [Cucurbita argyrosperma subsp. arg...	[more]
XP_004152101.1	2.27e-126	100.00	15-cis-zeta-carotene isomerase, chloroplastic isoform X1 [Cucumis sativus] >KGN5...	[more]
XP_038882546.1	9.39e-123	96.69	15-cis-zeta-carotene isomerase, chloroplastic [Benincasa hispida]	[more]
XP_008453974.1	1.33e-122	97.24	PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Cucumis melo]	[more]
XP_022145219.1	4.94e-121	94.48	15-cis-zeta-carotene isomerase, chloroplastic [Momordica charantia]	[more]

BLAST of Cucsat.G16774.T3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXF1	1.10e-126	100.00	NnrU domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015720 PE=4 S...	[more]
A0A1S3BYR9	6.45e-123	97.24	15-cis-zeta-carotene isomerase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1CUK6	2.39e-121	94.48	15-cis-zeta-carotene isomerase, chloroplastic OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1I3V9	2.52e-121	93.37	15-cis-zeta-carotene isomerase, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1F2X1	2.52e-121	93.37	15-cis-zeta-carotene isomerase, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009915	NnrU domain	PFAM	PF07298	NnrU	coord: 30..203 e-value: 8.1E-40 score: 136.6
None	No IPR available	GENE3D	1.20.120.1630		coord: 4..163 e-value: 4.3E-10 score: 41.6
None	No IPR available	PANTHER	PTHR35988	15-CIS-ZETA-CAROTENE ISOMERASE, CHLOROPLASTIC	coord: 30..212

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16774	Cucsat.G16774	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16774.T3.E1	Cucsat.G16774.T3.E1	exon
Cucsat.G16774.T3.E2	Cucsat.G16774.T3.E2	exon
Cucsat.G16774.T3.E3	Cucsat.G16774.T3.E3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16774.T3.C2	Cucsat.G16774.T3.C2	CDS
Cucsat.G16774.T3.C1	Cucsat.G16774.T3.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16774.T3	Cucsat.G16774.T3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016120	carotene biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0090471	9,15,9'-tri-cis-zeta-carotene isomerase activity
molecular_function	GO:0016853	isomerase activity