Cucsat.G16774.T16 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16774.T16
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	15-cis-zeta-carotene isomerase, chloroplastic
Location	ctg24: 930729 .. 933545 (-)
RNA-Seq Expression	Cucsat.G16774.T16
Synteny	Cucsat.G16774.T16

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTGCAATTTGCATATACATAATTCCATAAAATCCAAAACTTCCTTTGAAGAGCACCAATTACCTCAGATTCTCTCTTCCATTTTCCATTCCTCGATTCCTGATTGCCTTCAACCCTCACTTCCCACTCACAACTACCTCACTATTCAGTGCTCCAATGGCGGTTGCCTCCGCCACTCCCCCTTTTTCCCCTCCATTTCTCTCCTCCCCTCGCCATCGCCATCGCCGTCCTGATGCAATTTCCTTCCGACCCTTTTCAATTTCGACCCCCAATTGCCTTCAGCAACTTCCCCTTTCTCTCAATTCCTTCCACATTTTCCGACGTCCTCGATTGGTCGCCGAGGCTTCTATTGGAGACAGGGAGAGTGGTGGGTCGACCTCTGTCTCCGACGACGAGGGCTTTGTCGGCGAGGACGCTGCTGCTTTTGATCTTTCCGAGCAGAAATTGACTTCGTGGGTTTATTTCACTGTGATTTTGGGGGTTGTTCTGTTCGTGTTGAATGTTGTTTGGATTGATAACTCTGCTGGGGGTGTTGGGAAGGCCTTTCTGGATGCTGTTTCTGGAATTTCGGATAGTCATGAGGTTCACTTTTTTTGTGTTACTTCGTTTTGTTTAATTTGATTCACATTTGGAGATGAAGCCTGTATAGAAATAGTTCCATTGCCATAGAAGCAGTGTTCATAGTAATTCTGCTGTTTTATAGTTTATATATAGTGTTTCTCTCAGATGGTTTGTACGTGTTGGGTTCGTTGCTAAGACTTTTAGAAAGTTCAATTTTGTCCTTAATTTTAGTAAACTTCTAATGAATATGTAGAAGTTCTAAAATTGTATTCATTTGTAGCATTTTTGGGCTGTCTTGTGATATAGGAATATTTCCAATTCAGTTAGTAAAATATGTACATAACTCACAGATTTTGATAGAAAAATCAATCTTGATACATAAAGGATTGTATTGAAACTACGATCTTATTTGAACGAGATCTGTTTTGTAGGTTGTATATCTCTGTCCTTGAGTTCTAAAGGATTGTATTGAAACTGATTAAGGTCTTGTATGTCTGCTGTATATGAATGATTGGGGTGGATGAACATGGCATAAGGATTATATTGCTCATGGTTTAATGTTGAATTTTGGAAACTCACTTGATTATTTGATTATGAATCTAAGTCTTGAAACTTTCTTCCGTAGGTTGTGATGTTGCTCCTCATATTCATTTTTGCCATTGTCCATAGTGGTTTGGCCAGTCTCCGAGATCAGGGCGAGAAGCTTGTCGGGGAACGAGCTTTTCGGGTTTTGTTTGCTGGAGTTTCTCTGCCATTGGCTGTTAGCACTGTGGTAGGTACCTTACCGCTTCTTTTCCCTTGAACTTGATGCAGTAAATGCAATGTTCTTGAAGTTACCTCAGTACCTTTTATTCATTCAAGTTTTCCGAATGCACACGCATATTGACTTGTTTACACTAAGGAATTATATTCAGGTGTATTTCATTAACCATCGATACGATGGAGTACAGTTATGGCAGCTCCAAAGTGTTCCCCTACTGCATCAACTTGTGTGGCTTAGCTCGTTTGTCTCCTTCATCTTTCTCTATCCTTCAACTTTTAATCTGCTGGAGGTTGCAGCAGTTGATAAACCAAAAATGCACCTTTGGGAAACAGGCATCATTAGAATAACTAGACATCCACAGGTTTGTTCGTGTTTCATTATCTTCAATGTTCATTTCATTTCATTATAATATCCGGGTTCTATTGTTGAGTAGTACTTGGGTGCAGTCTAGGTTGCACCATGTCCATGAGATGACTGTCAATTAAAAATGAAAAAAAATAGAACATAAGACAATCGTTTTTAAAAAGTAAATTTGCTACATGGCAGCTTGTGATTTGCACTTGGGTGGGTTGCACAAGATAGTTGCATCCTAGGATGCTCCCAACTATTTTTCTTTATTAGTGCTAGTTTGCTGGCTTCGACTTGAATTCATCGATGAACTTGAGTTTTAATTTTGTGTACCACTTGAAATACACGTCTCATAGACAAATTTCTTATGTCAAGTGTCCTCAAATAGTAGGGTTGAACAATAAATTAGCCAAATGAAAGCTTAGAAACCATAATATAGGATTTAAAACCAAACTGTATATTGCATTAGACGAGTTTTTTCAGAAGTCACATTTGGTCTTCTAGAATAACACGAGAGAAGATGAAATCCAATTTCGTCCCTCTCTGTTTCCTGATAAAATGTTGATACTTCATGAGGGGAGGTTAAAAAAGACCACCAACCATGAAAAGTCAAACTGACCTGGCAAATCTTGGTTTTCTTTTAAGATGGTTGGACAGGTGATATGGTGTCTTGCTCATACAATCTGGATTGGGAACTCTGTTGCAGTAGCAGCTTCCATTGGTTTGATAGGACATCATCTGTTTGGCGTATGGAACGGAGACAGGAGGCTAGCCAAGCGATATGGGGCAGATTTTGAAGCCGTGAAAAGCCGAACAAGCATCATCCCATTCGCTGCCATTGTGGATGGTCGTCAAAAGTTGCCCGACGATTACTACAAGGAGTTCCTTCGCTTGCCATATCTATCAATCACTGCACTAACAATAGGAGCTTACCTTGCTCACCCTCTTATGCAAGCTGCTAGTTTCAGGCTTCATTGGTAACTCCATTTCTATGCAGCTAACTCTCCTGTTGTATCATAAATACTCAAATGTATTTCATTTGTTGTATAAACCAAAGCATAGAGCATACAGAAATGTGAGGCTATAGTCATAGCCTTTTTTATTACAAAGTTATGAAATAAAAATCATTCAACCTTATAAAACTA

Coding sequence (CDS)

ATGGCGGTTGCCTCCGCCACTCCCCCTTTTTCCCCTCCATTTCTCTCCTCCCCTCGCCATCGCCATCGCCGTCCTGATGCAATTTCCTTCCGACCCTTTTCAATTTCGACCCCCAATTGCCTTCAGCAACTTCCCCTTTCTCTCAATTCCTTCCACATTTTCCGACGTCCTCGATTGGTCGCCGAGGCTTCTATTGGAGACAGGGAGAGTGGTGGGTCGACCTCTGTCTCCGACGACGAGGGCTTTGTCGGCGAGGACGCTGCTGCTTTTGATCTTTCCGAGCAGAAATTGACTTCGTGGGTTTATTTCACTGTGATTTTGGGGGTTGTTCTGTTCGTGTTGAATGTTGTTTGGATTGATAACTCTGCTGGGGGTGTTGGGAAGGCCTTTCTGGATGCTGTTTCTGGAATTTCGGATAGTCATGAGGTTGTGATGTTGCTCCTCATATTCATTTTTGCCATTGTCCATAGTGGTTTGGCCAGTCTCCGAGATCAGGGCGAGAAGCTTGTCGGGGAACGAGCTTTTCGGGTTTTGTTTGCTGGAGTTTCTCTGCCATTGGCTGTTAGCACTGTGGAATTATATTCAGGTGTATTTCATTAA

Protein sequence

MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLVAEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWIDNSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVELYSGVFH

Homology

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BLAST of Cucsat.G16774.T16 vs. ExPASy Swiss-Prot
Match: Q9SAC0 (15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=Z-ISO PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.6e-40
Identity = 99/181 (54.70%), Postives = 124/181 (68.51%), Query Frame = 0


Query: 11  SPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLVAEASIGDRES 70
           SPP L       RRP+    R    + P       L  +S  + R  +++  +++ + + 
Sbjct: 10  SPPSLLLLPPSPRRPNLTLIRRIP-AHPRLGNSTSLLSSSSPVIR--KILVRSTLREDQP 69

Query: 71  GGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWIDNSAGGVGKAF 130
             S S S     +GED+AAF+L +QKL SWVYF V+LGVVLF+LNVVWIDNS  G GK+F
Sbjct: 70  IASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLFILNVVWIDNST-GFGKSF 129

Query: 131 LDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVST 190
           +DAVS IS S EV ML+LI IFAIVHSGLASLRD GEKL+GERAFRVLFAG+SLPLA+ST
Sbjct: 130 IDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGERAFRVLFAGISLPLAMST 186

Query: 191 V 192
           +
Sbjct: 190 I 186

[Close]

BLAST of Cucsat.G16774.T16 vs. ExPASy Swiss-Prot
Match: B4FHU1 (15-cis-zeta-carotene isomerase, chloroplastic OS=Zea mays OX=4577 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.8e-36
Identity = 94/185 (50.81%), Postives = 114/185 (61.62%), Query Frame = 0


Query: 11  SPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLVAEASIGDRES 70
           +PP L   R    RP   +  P     P      PLS    H   RP       I  +E 
Sbjct: 12  TPPLLPHRRPHLARPLCPTLNPIRAPLP------PLSRVLSH--ARPARAVGGGIEPKE- 71

Query: 71  GGSTSVSDDEG----FVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWIDNSAGGV 130
            G  +  D+ G     VGED+AAF+L +Q + SW YF  ILG VL  LNV+WID S  GV
Sbjct: 72  -GVVAEGDESGGGPVLVGEDSAAFELKDQSVASWAYFAGILGAVLVALNVLWIDPST-GV 131

Query: 131 GKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPL 190
           G  FLDAV+ +SDSHEVVMLLL  IFA+VHSG+ASLR+ GEK+VGER +RVLFAG+SLPL
Sbjct: 132 GTKFLDAVASVSDSHEVVMLLLTIIFAVVHSGMASLRESGEKIVGERVYRVLFAGISLPL 185

Query: 191 AVSTV 192
           AV+T+
Sbjct: 192 AVTTI 185

[Close]

BLAST of Cucsat.G16774.T16 vs. NCBI nr
Match: XP_031740105.1 (15-cis-zeta-carotene isomerase, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 366 bits (939), Expect = 1.20e-124
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLV 60
           MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLV
Sbjct: 1   MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLV 60

Query: 61  AEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120
           AEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWID
Sbjct: 61  AEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120

Query: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180
           NSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFA
Sbjct: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180

Query: 181 GVSLPLAVSTV 191
           GVSLPLAVSTV
Sbjct: 181 GVSLPLAVSTV 191

[Close]

BLAST of Cucsat.G16774.T16 vs. NCBI nr
Match: XP_004152101.1 (15-cis-zeta-carotene isomerase, chloroplastic isoform X1 [Cucumis sativus] >KGN53082.1 hypothetical protein Csa_015404 [Cucumis sativus])

HSP 1 Score: 366 bits (939), Expect = 1.80e-124
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLV 60
           MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLV
Sbjct: 1   MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLV 60

Query: 61  AEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120
           AEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWID
Sbjct: 61  AEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120

Query: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180
           NSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFA
Sbjct: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180

Query: 181 GVSLPLAVSTV 191
           GVSLPLAVSTV
Sbjct: 181 GVSLPLAVSTV 191

[Close]

BLAST of Cucsat.G16774.T16 vs. NCBI nr
Match: TYK16983.1 (15-cis-zeta-carotene isomerase [Cucumis melo var. makuwa])

HSP 1 Score: 334 bits (857), Expect = 1.66e-113
Identity = 178/191 (93.19%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLV 60
           MAVASATPPFSPP+LSSPRHR  RPDAIS RPFSIS PNCL QLPLSLNS HIFRRPR  
Sbjct: 1   MAVASATPPFSPPYLSSPRHR--RPDAISLRPFSISAPNCLLQLPLSLNSLHIFRRPRFA 60

Query: 61  AEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120
           AEASIGDRESGGSTSVSDDEG VGEDAA FDLSEQKLTSWVYFTVILGVVLFVLNVVWID
Sbjct: 61  AEASIGDRESGGSTSVSDDEGLVGEDAAVFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120

Query: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180
           NSAGGVGKAFLDAVSGISDSHEVVMLLL  IFAIVHSGLASLRDQGEKLVGERAFRVLFA
Sbjct: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLTLIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180

Query: 181 GVSLPLAVSTV 191
           GVSLPLAVSTV
Sbjct: 181 GVSLPLAVSTV 189

[Close]

BLAST of Cucsat.G16774.T16 vs. NCBI nr
Match: KAA0044603.1 (15-cis-zeta-carotene isomerase [Cucumis melo var. makuwa])

HSP 1 Score: 334 bits (857), Expect = 4.19e-112
Identity = 178/191 (93.19%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLV 60
           MAVASATPPFSPP+LSSPRHR  RPDAIS RPFSIS PNCL QLPLSLNS HIFRRPR  
Sbjct: 1   MAVASATPPFSPPYLSSPRHR--RPDAISLRPFSISAPNCLLQLPLSLNSLHIFRRPRFA 60

Query: 61  AEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120
           AEASIGDRESGGSTSVSDDEG VGEDAA FDLSEQKLTSWVYFTVILGVVLFVLNVVWID
Sbjct: 61  AEASIGDRESGGSTSVSDDEGLVGEDAAVFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120

Query: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180
           NSAGGVGKAFLDAVSGISDSHEVVMLLL  IFAIVHSGLASLRDQGEKLVGERAFRVLFA
Sbjct: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLTLIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180

Query: 181 GVSLPLAVSTV 191
           GVSLPLAVSTV
Sbjct: 181 GVSLPLAVSTV 189

[Close]

BLAST of Cucsat.G16774.T16 vs. NCBI nr
Match: XP_008453974.1 (PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Cucumis melo])

HSP 1 Score: 334 bits (857), Expect = 4.78e-112
Identity = 178/191 (93.19%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLV 60
           MAVASATPPFSPP+LSSPRHR  RPDAIS RPFSIS PNCL QLPLSLNS HIFRRPR  
Sbjct: 1   MAVASATPPFSPPYLSSPRHR--RPDAISLRPFSISAPNCLLQLPLSLNSLHIFRRPRFA 60

Query: 61  AEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120
           AEASIGDRESGGSTSVSDDEG VGEDAA FDLSEQKLTSWVYFTVILGVVLFVLNVVWID
Sbjct: 61  AEASIGDRESGGSTSVSDDEGLVGEDAAVFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120

Query: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180
           NSAGGVGKAFLDAVSGISDSHEVVMLLL  IFAIVHSGLASLRDQGEKLVGERAFRVLFA
Sbjct: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLTLIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180

Query: 181 GVSLPLAVSTV 191
           GVSLPLAVSTV
Sbjct: 181 GVSLPLAVSTV 189

[Close]

BLAST of Cucsat.G16774.T16 vs. ExPASy TrEMBL
Match: A0A0A0KXF1 (NnrU domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015720 PE=4 SV=1)

HSP 1 Score: 366 bits (939), Expect = 8.71e-125
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLV 60
           MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLV
Sbjct: 1   MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLV 60

Query: 61  AEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120
           AEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWID
Sbjct: 61  AEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120

Query: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180
           NSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFA
Sbjct: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180

Query: 181 GVSLPLAVSTV 191
           GVSLPLAVSTV
Sbjct: 181 GVSLPLAVSTV 191

[Close]

BLAST of Cucsat.G16774.T16 vs. ExPASy TrEMBL
Match: A0A5D3CYJ4 (15-cis-zeta-carotene isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001240 PE=4 SV=1)

HSP 1 Score: 334 bits (857), Expect = 8.03e-114
Identity = 178/191 (93.19%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLV 60
           MAVASATPPFSPP+LSSPRHR  RPDAIS RPFSIS PNCL QLPLSLNS HIFRRPR  
Sbjct: 1   MAVASATPPFSPPYLSSPRHR--RPDAISLRPFSISAPNCLLQLPLSLNSLHIFRRPRFA 60

Query: 61  AEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120
           AEASIGDRESGGSTSVSDDEG VGEDAA FDLSEQKLTSWVYFTVILGVVLFVLNVVWID
Sbjct: 61  AEASIGDRESGGSTSVSDDEGLVGEDAAVFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120

Query: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180
           NSAGGVGKAFLDAVSGISDSHEVVMLLL  IFAIVHSGLASLRDQGEKLVGERAFRVLFA
Sbjct: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLTLIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180

Query: 181 GVSLPLAVSTV 191
           GVSLPLAVSTV
Sbjct: 181 GVSLPLAVSTV 189

[Close]

BLAST of Cucsat.G16774.T16 vs. ExPASy TrEMBL
Match: A0A5A7TMA2 (15-cis-zeta-carotene isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003540 PE=4 SV=1)

HSP 1 Score: 334 bits (857), Expect = 2.03e-112
Identity = 178/191 (93.19%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLV 60
           MAVASATPPFSPP+LSSPRHR  RPDAIS RPFSIS PNCL QLPLSLNS HIFRRPR  
Sbjct: 1   MAVASATPPFSPPYLSSPRHR--RPDAISLRPFSISAPNCLLQLPLSLNSLHIFRRPRFA 60

Query: 61  AEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120
           AEASIGDRESGGSTSVSDDEG VGEDAA FDLSEQKLTSWVYFTVILGVVLFVLNVVWID
Sbjct: 61  AEASIGDRESGGSTSVSDDEGLVGEDAAVFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120

Query: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180
           NSAGGVGKAFLDAVSGISDSHEVVMLLL  IFAIVHSGLASLRDQGEKLVGERAFRVLFA
Sbjct: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLTLIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180

Query: 181 GVSLPLAVSTV 191
           GVSLPLAVSTV
Sbjct: 181 GVSLPLAVSTV 189

[Close]

BLAST of Cucsat.G16774.T16 vs. ExPASy TrEMBL
Match: A0A1S3BYR9 (15-cis-zeta-carotene isomerase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494534 PE=4 SV=1)

HSP 1 Score: 334 bits (857), Expect = 2.31e-112
Identity = 178/191 (93.19%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MAVASATPPFSPPFLSSPRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRPRLV 60
           MAVASATPPFSPP+LSSPRHR  RPDAIS RPFSIS PNCL QLPLSLNS HIFRRPR  
Sbjct: 1   MAVASATPPFSPPYLSSPRHR--RPDAISLRPFSISAPNCLLQLPLSLNSLHIFRRPRFA 60

Query: 61  AEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120
           AEASIGDRESGGSTSVSDDEG VGEDAA FDLSEQKLTSWVYFTVILGVVLFVLNVVWID
Sbjct: 61  AEASIGDRESGGSTSVSDDEGLVGEDAAVFDLSEQKLTSWVYFTVILGVVLFVLNVVWID 120

Query: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180
           NSAGGVGKAFLDAVSGISDSHEVVMLLL  IFAIVHSGLASLRDQGEKLVGERAFRVLFA
Sbjct: 121 NSAGGVGKAFLDAVSGISDSHEVVMLLLTLIFAIVHSGLASLRDQGEKLVGERAFRVLFA 180

Query: 181 GVSLPLAVSTV 191
           GVSLPLAVSTV
Sbjct: 181 GVSLPLAVSTV 189

[Close]

BLAST of Cucsat.G16774.T16 vs. ExPASy TrEMBL
Match: A0A6J1I3V9 (15-cis-zeta-carotene isomerase, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470740 PE=4 SV=1)

HSP 1 Score: 288 bits (737), Expect = 4.23e-94
Identity = 159/194 (81.96%), Postives = 166/194 (85.57%), Query Frame = 0


Query: 1   MAVASATPPFSPPFLSS---PRHRHRRPDAISFRPFSISTPNCLQQLPLSLNSFHIFRRP 60
           MAVASAT  F  PF +S   P HRHRRPDA + RP SISTPN L QL  SLNS  I RR 
Sbjct: 1   MAVASATTLFFSPFPTSSNQPHHRHRRPDAFTLRPSSISTPNFLPQLSFSLNSSPIPRRR 60

Query: 61  RLVAEASIGDRESGGSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVV 120
           R  AEASIGD ESGGSTS SDD+G VGEDAA F+LSEQKL SWVYFTVILGVVLFVLNVV
Sbjct: 61  RFSAEASIGDSESGGSTSTSDDDGLVGEDAAVFNLSEQKLASWVYFTVILGVVLFVLNVV 120

Query: 121 WIDNSAGGVGKAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRV 180
           WIDNSAGGVGKAF+DAVSG+SDSHEVVML LIFIFA+VHSGLASLRDQGEKLVGERAFRV
Sbjct: 121 WIDNSAGGVGKAFVDAVSGLSDSHEVVMLALIFIFAVVHSGLASLRDQGEKLVGERAFRV 180

Query: 181 LFAGVSLPLAVSTV 191
           LFAGVSLPLAVSTV
Sbjct: 181 LFAGVSLPLAVSTV 194

The following BLAST results are available for this feature:

BLAST of Cucsat.G16774.T16 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAC0	5.6e-40	54.70	15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
B4FHU1	3.8e-36	50.81	15-cis-zeta-carotene isomerase, chloroplastic OS=Zea mays OX=4577 PE=1 SV=1	[more]

BLAST of Cucsat.G16774.T16 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740105.1	1.20e-124	100.00	15-cis-zeta-carotene isomerase, chloroplastic isoform X2 [Cucumis sativus]	[more]
XP_004152101.1	1.80e-124	100.00	15-cis-zeta-carotene isomerase, chloroplastic isoform X1 [Cucumis sativus] >KGN5...	[more]
TYK16983.1	1.66e-113	93.19	15-cis-zeta-carotene isomerase [Cucumis melo var. makuwa]	[more]
KAA0044603.1	4.19e-112	93.19	15-cis-zeta-carotene isomerase [Cucumis melo var. makuwa]	[more]
XP_008453974.1	4.78e-112	93.19	PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Cucumis melo]	[more]

BLAST of Cucsat.G16774.T16 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXF1	8.71e-125	100.00	NnrU domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015720 PE=4 S...	[more]
A0A5D3CYJ4	8.03e-114	93.19	15-cis-zeta-carotene isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TMA2	2.03e-112	93.19	15-cis-zeta-carotene isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3BYR9	2.31e-112	93.19	15-cis-zeta-carotene isomerase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1I3V9	4.23e-94	81.96	15-cis-zeta-carotene isomerase, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009915	NnrU domain	PFAM	PF07298	NnrU	coord: 144..191 e-value: 1.4E-6 score: 28.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR35988	15-CIS-ZETA-CAROTENE ISOMERASE, CHLOROPLASTIC	coord: 53..192

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16774	Cucsat.G16774	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16774.T16.E1	Cucsat.G16774.T16.E1	exon
Cucsat.G16774.T16.E2	Cucsat.G16774.T16.E2	exon
Cucsat.G16774.T16.E3	Cucsat.G16774.T16.E3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16774.T16.C3	Cucsat.G16774.T16.C3	CDS
Cucsat.G16774.T16.C2	Cucsat.G16774.T16.C2	CDS
Cucsat.G16774.T16.C1	Cucsat.G16774.T16.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16774.T16	Cucsat.G16774.T16-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016120	carotene biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0090471	9,15,9'-tri-cis-zeta-carotene isomerase activity
molecular_function	GO:0016853	isomerase activity