Cucsat.G16774.T15 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16774.T15
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	15-cis-zeta-carotene isomerase, chloroplastic
Location	ctg24: 930707 .. 935543 (-)
RNA-Seq Expression	Cucsat.G16774.T15
Synteny	Cucsat.G16774.T15

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCATTGGCTGCTGGGAGCTTTGGGGGATCGGAATTCGATCCTCCGATCGTTAATTCCTTGCAGATTATGAGAATCTGACAATGAAAAAAGACATCTCAGAAAGCCAGTTCCTCATTTCTCCCATGGGTTCTTGGCTCGCTATGATGTCTACATTTTCTACTCGTTTGAGCTCCACCATCCTCCTCTCTGCCTCCAAATCTTCTTTTTTTTTGTCTCTTGATTTAGGGTTTATGGAACCTAGATGCTGTACTTACTGTTTTGTTTTCGTCGTTTTTTGATTCAGATTCCGAGTTTTCAACGAAATTTGGTTTATTTTTCGTGTTTTTTGTTTTAAATGGTAGACTTCTCACTTCTTGTTCAAGTTACTTTTATATGTTCATGTTGACATAGACGAATTATCAACGTCCTAATAATAATTGAAATAACCCAAATGCGAAAAAAATATAAAAACTTTGCCTCTGGGTTATTTCTTCTCAATATGAATATAATTGAGTGATATAGTATCAATTAATTGAAATTAAATACCATGGTAATTATCGTTAAATAAAAATAATAAAATAAACATCTCTTCCAAGCTATGTTTCTTTGTCTGGTGTGCAAGAAGTTCTGAAGAAGGTACTCAAAGTTGCTTGAAAAATTGGTGTGGCTTTGGGCTTCGAGAAGTAGCTCTCCAAGTTGACAAAATGGTTACTCAAATCTGAAGCCATTTAAAGAGATATCAACACTAAGAAATTGCACCATGATCTGTGAGAATGTGGGTGGAGGATCTTCAACATCTTGTTTACGATGATCTGTTGGATGAGCTTGTTTATGAAGATCTTCGACGCAAAGTGGGAACAGAGAAAATAAAGAAAAAGGTTCACAGTTTCTTTCATCTTCCCATAATAATCCATTTTTGGTTTGTAGAAATATGACCTAAAGAATGAAGGACACTACTGAAACTATGTGTAAACGTTACCATGAGTCAAGTCCTTTAGGCTTGATTGCTATGGTTAGGGAGGAATGCATTGAAACACATGGGAATGTTGATATAATTAAGCAGATTCGAGAGACAACATCAAATCTTAATTTTGATGAAGTTATGATAGGAAGAGAAGTGGAAGTTTCAAACATAGTGAAGTTGGTGATTGAATTTAGCAAAGAACATCAAATATCCATCATACCCATTGTGGGTATGCGTGGGTTGGGGAATACAACTTTGGCCTTCAATCATGAGCCGGTTAAAGGTCATTTTGATGAAACTATATGGCTATGTGTGTGGCTGAACATGAAAACACCTCGCAATCTTGTTACTTGAATAAGAAGCATTGTGGCGAATTTGCGAGGAAATCTAGTGGTGATACTTTTAACTTTTGAAGTGATAGTAAGAGTCCAAGAAATGGGATACAAGCTGAAATTGATTTGCCATACTTTGATGAATGATACATGAAAAAATTATTTGATTTGATTAAAAAAAAAGTAAAAGATATATTTGATTGGATGGATATTCATGAAAAGAGACAAATTAAGTTGTTAAAATACAAATTAAAAAGGTGGGACAACAACATGGTGGGATCAATTGTCATAAAAAAAAGGAGGAAAATTGGCAAGAAGGGAATAAAAGATTGAGAAAAAAGAAAATGAGGAAGATGTTTGAAGCAAAGAGTCTTGTTTAACAATTATGAATAAATATTGGATTAACCATATCAACATTCCAATCAATAAACTCAAACTATTAATATAATTAACCATTTGTATAATTAAAAACTCATTAACCCATAAGCTTCTTTTGGGAGTTGTCTCATCCGGCAAACTTGTTGGGCAACTAATATAAACTTATACTATCAGTCTGATCTTTCGTGAAATTTTTTTGAAGAGCATAGTTTAACAATTGACATGACCATTTTTTGTAAGTCAATGATTGGACCCATTGCCGAAATTGTTGTAGTGAAAGAAACGTTTCTCCCAAGTAATTTGCATATAGAGAATTGGTATCACTTATGAGAGTAGCGTAGGCCTGCAATTTGCATATACATAATTCCATAAAATCCAAAACTTCCTTTGAAGAGCACCAATTACCTCAGATTCTCTCTTCCATTTTCCATTCCTCGATTCCTGATTGCCTTCAACCCTCACTTCCCACTCACAACTACCTCACTATTCAGTGCTCCAATGGCGGTTGCCTCCGCCACTCCCCCTTTTTCCCCTCCATTTCTCTCCTCCCCTCGCCATCGCCATCGCCGTCCTGATGCAATTTCCTTCCGACCCTTTTCAATTTCGACCCCCAATTGCCTTCAGCAACTTCCCCTTTCTCTCAATTCCTTCCACATTTTCCGACGTCCTCGATTGGTCGCCGAGGCTTCTATTGGAGACAGGGAGAGTGGTGGGTCGACCTCTGTCTCCGACGACGAGGGCTTTGTCGGCGAGGACGCTGCTGCTTTTGATCTTTCCGAGCAGAAATTGACTTCGTGGGTTTATTTCACTGTGATTTTGGGGGTTGTTCTGTTCGTGTTGAATGTTGTTTGGATTGATAACTCTGCTGGGGGTGTTGGGAAGGCCTTTCTGGATGCTGTTTCTGGAATTTCGGATAGTCATGAGGTTCACTTTTTTTGTGTTACTTCGTTTTGTTTAATTTGATTCACATTTGGAGATGAAGCCTGTATAGAAATAGTTCCATTGCCATAGAAGCAGTGTTCATAGTAATTCTGCTGTTTTATAGTTTATATATAGTGTTTCTCTCAGATGGTTTGTACGTGTTGGGTTCGTTGCTAAGACTTTTAGAAAGTTCAATTTTGTCCTTAATTTTAGTAAACTTCTAATGAATATGTAGAAGTTCTAAAATTGTATTCATTTGTAGCATTTTTGGGCTGTCTTGTGATATAGGAATATTTCCAATTCAGTTAGTAAAATATGTACATAACTCACAGATTTTGATAGAAAAATCAATCTTGATACATAAAGGATTGTATTGAAACTACGATCTTATTTGAACGAGATCTGTTTTGTAGGTTGTATATCTCTGTCCTTGAGTTCTAAAGGATTGTATTGAAACTGATTAAGGTCTTGTATGTCTGCTGTATATGAATGATTGGGGTGGATGAACATGGCATAAGGATTATATTGCTCATGGTTTAATGTTGAATTTTGGAAACTCACTTGATTATTTGATTATGAATCTAAGTCTTGAAACTTTCTTCCGTAGGTTGTGATGTTGCTCCTCATATTCATTTTTGCCATTGTCCATAGTGGTTTGGCCAGTCTCCGAGATCAGGGCGAGAAGCTTGTCGGGGAACGAGCTTTTCGGGTTTTGTTTGCTGGAGTTTCTCTGCCATTGGCTGTTAGCACTGTGGTAGGTACCTTACCGCTTCTTTTCCCTTGAACTTGATGCAGTAAATGCAATGTTCTTGAAGTTACCTCAGTACCTTTTATTCATTCAAGTTTTCCGAATGCACACGCATATTGACTTGTTTACACTAAGGAATTATATTCAGGTGTATTTCATTAACCATCGATACGATGGAGTACAGTTATGGCAGCTCCAAAGTGTTCCCCTACTGCATCAACTTGTGTGGCTTAGCTCGTTTGTCTCCTTCATCTTTCTCTATCCTTCAACTTTTAATCTGCTGGAGGTTGCAGCAGTTGATAAACCAAAAATGCACCTTTGGGAAACAGGCATCATTAGAATAACTAGACATCCACAGGTTTGTTCGTGTTTCATTATCTTCAATGTTCATTTCATTTCATTATAATATCCGGGTTCTATTGTTGAGTAGTACTTGGGTGCAGTCTAGGTTGCACCATGTCCATGAGATGACTGTCAATTAAAAATGAAAAAAAATAGAACATAAGACAATCGTTTTTAAAAAGTAAATTTGCTACATGGCAGCTTGTGATTTGCACTTGGGTGGGTTGCACAAGATAGTTGCATCCTAGGATGCTCCCAACTATTTTTCTTTATTAGTGCTAGTTTGCTGGCTTCGACTTGAATTCATCGATGAACTTGAGTTTTAATTTTGTGTACCACTTGAAATACACGTCTCATAGACAAATTTCTTATGTCAAGTGTCCTCAAATAGTAGGGTTGAACAATAAATTAGCCAAATGAAAGCTTAGAAACCATAATATAGGATTTAAAACCAAACTGTATATTGCATTAGACGAGTTTTTTCAGAAGTCACATTTGGTCTTCTAGAATAACACGAGAGAAGATGAAATCCAATTTCGTCCCTCTCTGTTTCCTGATAAAATGTTGATACTTCATGAGGGGAGGTTAAAAAAGACCACCAACCATGAAAAGTCAAACTGACCTGGCAAATCTTGGTTTTCTTTTAAGATGGTTGGACAGGTGATATGGTGTCTTGCTCATACAATCTGGATTGGGAACTCTGTTGCAGTAGCAGCTTCCATTGGTTTGATAGGACATCATCTGTTTGGCGTATGGAACGGAGACAGGAGGCTAGCCAAGCGATATGGGGCAGATTTTGAAGCCGTGAAAAGCCGAACAAGCATCATCCCATTCGCTGCCATTGTGGATGGTCGTCAAAAGTTGCCCGACGATTACTACAAGGAGTTCCTTCGCTTGCCATATCTATCAATCACTGCACTAACAATAGGAGCTTACCTTGCTCACCCTCTTATGCAAGCTGCTAGTTTCAGGCTTCATTGGTAACTCCATTTCTATGCAGCTAACTCTCCTGTTGTATCATAAATACTCAAATGTATTTCATTTGTTGTATAAACCAAAGCATAGAGCATACAGAAATGTGAGGCTATAGTCATAGCCTTTTTTATTACAAAGTTATGAAATAAAAATCATTCAACCTTATAAAACTATAAAAATGCCCTTCAAGAAAAA

Coding sequence (CDS)

ATGTGGGTGGAGGATCTTCAACATCTTGTTTACGATGATCTGTTGGATGAGCTTGTTTATGAAGATCTTCGACGCAAAGTGGGAACAGAGAAAATAAAGAAAAAGGTTGTGATGTTGCTCCTCATATTCATTTTTGCCATTGTCCATAGTGGTTTGGCCAGTCTCCGAGATCAGGGCGAGAAGCTTGTCGGGGAACGAGCTTTTCGGGTTTTGTTTGCTGGAGTTTCTCTGCCATTGGCTGTTAGCACTGTGGTGTATTTCATTAACCATCGATACGATGGAGTACAGTTATGGCAGCTCCAAAGTGTTCCCCTACTGCATCAACTTGTGTGGCTTAGCTCGTTTGTCTCCTTCATCTTTCTCTATCCTTCAACTTTTAATCTGCTGGAGGTTGCAGCAGTTGATAAACCAAAAATGCACCTTTGGGAAACAGGCATCATTAGAATAACTAGACATCCACAGATGGTTGGACAGGTGATATGGTGTCTTGCTCATACAATCTGGATTGGGAACTCTGTTGCAGTAGCAGCTTCCATTGGTTTGATAGGACATCATCTGTTTGGCGTATGGAACGGAGACAGGAGGCTAGCCAAGCGATATGGGGCAGATTTTGAAGCCGTGAAAAGCCGAACAAGCATCATCCCATTCGCTGCCATTGTGGATGGTCGTCAAAAGTTGCCCGACGATTACTACAAGGAGTTCCTTCGCTTGCCATATCTATCAATCACTGCACTAACAATAGGAGCTTACCTTGCTCACCCTCTTATGCAAGCTGCTAGTTTCAGGCTTCATTGGTAA

Protein sequence

MWVEDLQHLVYDDLLDELVYEDLRRKVGTEKIKKKVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSIIPFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW

Homology

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BLAST of Cucsat.G16774.T15 vs. ExPASy Swiss-Prot
Match: Q9SAC0 (15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=Z-ISO PE=1 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 6.6e-113
Identity = 187/231 (80.95%), Postives = 214/231 (92.64%), Query Frame = 0


Query: 35  KVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 94
           +V ML+LI IFAIVHSGLASLRD GEKL+GERAFRVLFAG+SLPLA+ST+VYFINHRYDG
Sbjct: 137 EVAMLMLILIFAIVHSGLASLRDIGEKLIGERAFRVLFAGISLPLAMSTIVYFINHRYDG 196

Query: 95  VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 154
            QLWQLQ VP +H+ +W+++FVSF FLYPSTFNLLEVAAVDKPKMHLWETGI+RITRHPQ
Sbjct: 197 SQLWQLQGVPGVHEAIWVANFVSFFFLYPSTFNLLEVAAVDKPKMHLWETGIMRITRHPQ 256

Query: 155 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII 214
           MVGQ++WCLAHT+WIGN+VA +AS+GLI HHLFG WNGDRRLAKRYG DFE++K RTS+I
Sbjct: 257 MVGQIVWCLAHTLWIGNTVAASASLGLIAHHLFGAWNGDRRLAKRYGEDFESIKKRTSVI 316

Query: 215 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 266
           PFAAI +GRQ LP+DYYKEF+RLPYL+ITALT+GAY AHPLMQ ASFRLHW
Sbjct: 317 PFAAIFEGRQVLPEDYYKEFVRLPYLAITALTVGAYFAHPLMQGASFRLHW 367

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BLAST of Cucsat.G16774.T15 vs. ExPASy Swiss-Prot
Match: B4FHU1 (15-cis-zeta-carotene isomerase, chloroplastic OS=Zea mays OX=4577 PE=1 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 2.4e-107
Identity = 177/231 (76.62%), Postives = 208/231 (90.04%), Query Frame = 0


Query: 35  KVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 94
           +VVMLLL  IFA+VHSG+ASLR+ GEK+VGER +RVLFAG+SLPLAV+T+VYFINHRYDG
Sbjct: 136 EVVMLLLTIIFAVVHSGMASLRESGEKIVGERVYRVLFAGISLPLAVTTIVYFINHRYDG 195

Query: 95  VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 154
            QLWQ+Q +  +H+L+W SSF+SF FLYPSTFNLLEVAAVDKPK+H+WETGI+RITRHPQ
Sbjct: 196 TQLWQVQGITGIHELLWFSSFISFFFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQ 255

Query: 155 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII 214
           MVGQVIWCLAHT+WIGNSVAVAAS+GLI HHLFG WNGDRRL  RYG  FE +K RTS++
Sbjct: 256 MVGQVIWCLAHTLWIGNSVAVAASVGLISHHLFGAWNGDRRLLSRYGEAFEVLKKRTSVM 315

Query: 215 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 266
           PFAAI+DGRQKLP DY+KEF RLPY++IT LT+GAY AHPLMQA+S++L W
Sbjct: 316 PFAAIIDGRQKLPKDYHKEFFRLPYVAITMLTLGAYFAHPLMQASSYQLPW 366

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BLAST of Cucsat.G16774.T15 vs. NCBI nr
Match: XP_004152101.1 (15-cis-zeta-carotene isomerase, chloroplastic isoform X1 [Cucumis sativus] >KGN53082.1 hypothetical protein Csa_015404 [Cucumis sativus])

HSP 1 Score: 462 bits (1189), Expect = 2.48e-161
Identity = 230/231 (99.57%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 35  KVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 94
           +VVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG
Sbjct: 142 EVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 201

Query: 95  VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 154
           VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ
Sbjct: 202 VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 261

Query: 155 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII 214
           MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII
Sbjct: 262 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII 321

Query: 215 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 265
           PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW
Sbjct: 322 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 372

[Close]

BLAST of Cucsat.G16774.T15 vs. NCBI nr
Match: XP_038882546.1 (15-cis-zeta-carotene isomerase, chloroplastic [Benincasa hispida])

HSP 1 Score: 451 bits (1160), Expect = 5.96e-157
Identity = 223/231 (96.54%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 35  KVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 94
           +VVMLLL FIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG
Sbjct: 140 EVVMLLLTFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 199

Query: 95  VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 154
           VQLWQLQSVP LHQLVWLSSFVSF FLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ
Sbjct: 200 VQLWQLQSVPGLHQLVWLSSFVSFFFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 259

Query: 155 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII 214
           MVGQV+WCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVK RTSI+
Sbjct: 260 MVGQVMWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKRRTSIV 319

Query: 215 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 265
           PFAAIVDGRQKLPDDYYKEF+RLPYLSITALTIGAYLAHPLMQAASFRLHW
Sbjct: 320 PFAAIVDGRQKLPDDYYKEFVRLPYLSITALTIGAYLAHPLMQAASFRLHW 370

[Close]

BLAST of Cucsat.G16774.T15 vs. NCBI nr
Match: XP_008453974.1 (PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Cucumis melo])

HSP 1 Score: 448 bits (1153), Expect = 6.92e-156
Identity = 223/231 (96.54%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 35  KVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 94
           +VVMLLL  IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG
Sbjct: 140 EVVMLLLTLIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 199

Query: 95  VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 154
           VQLWQLQSVP LHQLVWLSSFVSF FLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ
Sbjct: 200 VQLWQLQSVPGLHQLVWLSSFVSFFFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 259

Query: 155 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII 214
           MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYG DFEAV+ RTSII
Sbjct: 260 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGVDFEAVQRRTSII 319

Query: 215 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 265
           PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW
Sbjct: 320 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 370

[Close]

BLAST of Cucsat.G16774.T15 vs. NCBI nr
Match: XP_022932715.1 (15-cis-zeta-carotene isomerase, chloroplastic [Cucurbita moschata] >KAG6597644.1 15-cis-zeta-carotene isomerase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 446 bits (1148), Expect = 4.75e-155
Identity = 216/231 (93.51%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 35  KVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 94
           +VVML LIFIFA+VHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG
Sbjct: 145 EVVMLALIFIFAVVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 204

Query: 95  VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 154
           VQLWQL S+P LHQLVWLSSF+SF FLYPSTFNLLEVAAVDKPKMHLWETGI+RITRHPQ
Sbjct: 205 VQLWQLHSIPGLHQLVWLSSFISFFFLYPSTFNLLEVAAVDKPKMHLWETGIMRITRHPQ 264

Query: 155 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII 214
           MVGQVIWCLAHT+WIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVK RTS++
Sbjct: 265 MVGQVIWCLAHTVWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKRRTSVV 324

Query: 215 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 265
           PFAAI+DGRQKLPDDYYKEF+RLPYLSITALTIGAYLAHPLMQAASFRLHW
Sbjct: 325 PFAAILDGRQKLPDDYYKEFIRLPYLSITALTIGAYLAHPLMQAASFRLHW 375

[Close]

BLAST of Cucsat.G16774.T15 vs. NCBI nr
Match: XP_022972107.1 (15-cis-zeta-carotene isomerase, chloroplastic [Cucurbita maxima])

HSP 1 Score: 446 bits (1148), Expect = 4.75e-155
Identity = 216/231 (93.51%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 35  KVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 94
           +VVML LIFIFA+VHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG
Sbjct: 145 EVVMLALIFIFAVVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 204

Query: 95  VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 154
           VQLWQL S+P LHQLVWLSSF+SF FLYPSTFNLLEVAAVDKPKMHLWETGI+RITRHPQ
Sbjct: 205 VQLWQLHSIPGLHQLVWLSSFISFFFLYPSTFNLLEVAAVDKPKMHLWETGIMRITRHPQ 264

Query: 155 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII 214
           MVGQVIWCLAHT+WIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVK RTS++
Sbjct: 265 MVGQVIWCLAHTVWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKRRTSVV 324

Query: 215 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 265
           PFAAI+DGRQKLPDDYYKEF+RLPYLSITALTIGAYLAHPLMQAASFRLHW
Sbjct: 325 PFAAILDGRQKLPDDYYKEFIRLPYLSITALTIGAYLAHPLMQAASFRLHW 375

[Close]

BLAST of Cucsat.G16774.T15 vs. ExPASy TrEMBL
Match: A0A0A0KXF1 (NnrU domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015720 PE=4 SV=1)

HSP 1 Score: 462 bits (1189), Expect = 1.20e-161
Identity = 230/231 (99.57%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 35  KVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 94
           +VVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG
Sbjct: 142 EVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 201

Query: 95  VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 154
           VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ
Sbjct: 202 VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 261

Query: 155 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII 214
           MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII
Sbjct: 262 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII 321

Query: 215 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 265
           PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW
Sbjct: 322 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 372

[Close]

BLAST of Cucsat.G16774.T15 vs. ExPASy TrEMBL
Match: A0A1S3BYR9 (15-cis-zeta-carotene isomerase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494534 PE=4 SV=1)

HSP 1 Score: 448 bits (1153), Expect = 3.35e-156
Identity = 223/231 (96.54%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 35  KVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 94
           +VVMLLL  IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG
Sbjct: 140 EVVMLLLTLIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 199

Query: 95  VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 154
           VQLWQLQSVP LHQLVWLSSFVSF FLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ
Sbjct: 200 VQLWQLQSVPGLHQLVWLSSFVSFFFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 259

Query: 155 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII 214
           MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYG DFEAV+ RTSII
Sbjct: 260 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGVDFEAVQRRTSII 319

Query: 215 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 265
           PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW
Sbjct: 320 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 370

[Close]

BLAST of Cucsat.G16774.T15 vs. ExPASy TrEMBL
Match: A0A6J1I3V9 (15-cis-zeta-carotene isomerase, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470740 PE=4 SV=1)

HSP 1 Score: 446 bits (1148), Expect = 2.30e-155
Identity = 216/231 (93.51%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 35  KVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 94
           +VVML LIFIFA+VHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG
Sbjct: 145 EVVMLALIFIFAVVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 204

Query: 95  VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 154
           VQLWQL S+P LHQLVWLSSF+SF FLYPSTFNLLEVAAVDKPKMHLWETGI+RITRHPQ
Sbjct: 205 VQLWQLHSIPGLHQLVWLSSFISFFFLYPSTFNLLEVAAVDKPKMHLWETGIMRITRHPQ 264

Query: 155 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII 214
           MVGQVIWCLAHT+WIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVK RTS++
Sbjct: 265 MVGQVIWCLAHTVWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKRRTSVV 324

Query: 215 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 265
           PFAAI+DGRQKLPDDYYKEF+RLPYLSITALTIGAYLAHPLMQAASFRLHW
Sbjct: 325 PFAAILDGRQKLPDDYYKEFIRLPYLSITALTIGAYLAHPLMQAASFRLHW 375

[Close]

BLAST of Cucsat.G16774.T15 vs. ExPASy TrEMBL
Match: A0A6J1F2X1 (15-cis-zeta-carotene isomerase, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111439180 PE=4 SV=1)

HSP 1 Score: 446 bits (1148), Expect = 2.30e-155
Identity = 216/231 (93.51%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 35  KVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 94
           +VVML LIFIFA+VHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG
Sbjct: 145 EVVMLALIFIFAVVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 204

Query: 95  VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 154
           VQLWQL S+P LHQLVWLSSF+SF FLYPSTFNLLEVAAVDKPKMHLWETGI+RITRHPQ
Sbjct: 205 VQLWQLHSIPGLHQLVWLSSFISFFFLYPSTFNLLEVAAVDKPKMHLWETGIMRITRHPQ 264

Query: 155 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII 214
           MVGQVIWCLAHT+WIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVK RTS++
Sbjct: 265 MVGQVIWCLAHTVWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKRRTSVV 324

Query: 215 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 265
           PFAAI+DGRQKLPDDYYKEF+RLPYLSITALTIGAYLAHPLMQAASFRLHW
Sbjct: 325 PFAAILDGRQKLPDDYYKEFIRLPYLSITALTIGAYLAHPLMQAASFRLHW 375

[Close]

BLAST of Cucsat.G16774.T15 vs. ExPASy TrEMBL
Match: A0A6J1CUK6 (15-cis-zeta-carotene isomerase, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014723 PE=4 SV=1)

HSP 1 Score: 442 bits (1137), Expect = 1.48e-153
Identity = 215/231 (93.07%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 35  KVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDG 94
           +VVML+LI IFAI HSGLA+LRDQGEKLVGERAFRVLFAG+SLPLAVSTVVYFINHRYDG
Sbjct: 154 EVVMLMLISIFAIAHSGLATLRDQGEKLVGERAFRVLFAGISLPLAVSTVVYFINHRYDG 213

Query: 95  VQLWQLQSVPLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 154
           VQLWQLQSVP +HQLVW SSF+SF FLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ
Sbjct: 214 VQLWQLQSVPGVHQLVWFSSFISFFFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQ 273

Query: 155 MVGQVIWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKSRTSII 214
           MVGQV+WCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVK RTS+I
Sbjct: 274 MVGQVMWCLAHTIWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKRRTSVI 333

Query: 215 PFAAIVDGRQKLPDDYYKEFLRLPYLSITALTIGAYLAHPLMQAASFRLHW 265
           PFAAIVDGRQKLPDDYYKEF+RLPYLSITALT+GAYLAHPLMQAASFRLHW
Sbjct: 334 PFAAIVDGRQKLPDDYYKEFIRLPYLSITALTMGAYLAHPLMQAASFRLHW 384

The following BLAST results are available for this feature:

BLAST of Cucsat.G16774.T15 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAC0	6.6e-113	80.95	15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
B4FHU1	2.4e-107	76.62	15-cis-zeta-carotene isomerase, chloroplastic OS=Zea mays OX=4577 PE=1 SV=1	[more]

BLAST of Cucsat.G16774.T15 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152101.1	2.48e-161	99.57	15-cis-zeta-carotene isomerase, chloroplastic isoform X1 [Cucumis sativus] >KGN5...	[more]
XP_038882546.1	5.96e-157	96.54	15-cis-zeta-carotene isomerase, chloroplastic [Benincasa hispida]	[more]
XP_008453974.1	6.92e-156	96.54	PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Cucumis melo]	[more]
XP_022932715.1	4.75e-155	93.51	15-cis-zeta-carotene isomerase, chloroplastic [Cucurbita moschata] >KAG6597644.1...	[more]
XP_022972107.1	4.75e-155	93.51	15-cis-zeta-carotene isomerase, chloroplastic [Cucurbita maxima]	[more]

BLAST of Cucsat.G16774.T15 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXF1	1.20e-161	99.57	NnrU domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015720 PE=4 S...	[more]
A0A1S3BYR9	3.35e-156	96.54	15-cis-zeta-carotene isomerase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1I3V9	2.30e-155	93.51	15-cis-zeta-carotene isomerase, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1F2X1	2.30e-155	93.51	15-cis-zeta-carotene isomerase, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1CUK6	1.48e-153	93.07	15-cis-zeta-carotene isomerase, chloroplastic OS=Momordica charantia OX=3673 GN=...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.120.1630		coord: 30..216 e-value: 1.9E-13 score: 52.6
None	No IPR available	PANTHER	PTHR35988	15-CIS-ZETA-CAROTENE ISOMERASE, CHLOROPLASTIC	coord: 33..265
IPR009915	NnrU domain	PFAM	PF07298	NnrU	coord: 37..256 e-value: 5.4E-52 score: 176.4

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16774	Cucsat.G16774	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16774.T15.E1	Cucsat.G16774.T15.E1	exon
Cucsat.G16774.T15.E2	Cucsat.G16774.T15.E2	exon
Cucsat.G16774.T15.E3	Cucsat.G16774.T15.E3	exon
Cucsat.G16774.T15.E4	Cucsat.G16774.T15.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16774.T15.C4	Cucsat.G16774.T15.C4	CDS
Cucsat.G16774.T15.C3	Cucsat.G16774.T15.C3	CDS
Cucsat.G16774.T15.C2	Cucsat.G16774.T15.C2	CDS
Cucsat.G16774.T15.C1	Cucsat.G16774.T15.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16774.T15	Cucsat.G16774.T15-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016120	carotene biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0090471	9,15,9'-tri-cis-zeta-carotene isomerase activity
molecular_function	GO:0016853	isomerase activity