Cucsat.G16774.T13 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16774.T13
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	15-cis-zeta-carotene isomerase, chloroplastic
Location	ctg24: 927411 .. 930068 (-)
RNA-Seq Expression	Cucsat.G16774.T13
Synteny	Cucsat.G16774.T13

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGACGAGGAGAGGGTCCGTAATTTCTCTTAAACTGACACTGAACACAACCACTCATTCCCTCTCACCTTTTCCCTTCTTCTCGCCGGCGATCTTCTTCCCCATCAACCTCCGGCCTCCACGCCCGCAAAGCTTCAAGATTCCCTCACCCGTTTCTCCATCATGCACTTTCTGTTCTAGGGTTCCTTTCCTTTCCTTTCCTTTCCTTTCCCCTCTTCTCTGTTTCCTGGTGAGTGACTTCACTGATTCTCCTCTCATTGTTTTGTTTGTTTCTCTCCACAATGCCTTGCTTTCTGCCAACGTTAAATGGTCCCCATGTTCGTAACGCTCTTTTAGAAGTACGTTTTCGGGTCTAATTCGTTATCAGGTCTCGCTTTACTATGCCCAATTTTGCGGAATGGAATGTTATCCAATTTTGTCTCTTTTTTAATTTTATTCTCATTTCTCTTGGGCAATGTGCGTCTGTTGTGGGATGGGAAATGTTGATAAAACCTTCTCCCGGTAGTTTTATGTCTTGGAATTTCAATCTTTTCTTCATTTCTTGTAACTTTTGATGGGTTGTTGAGATAGAACATTGAGGCATTTGATATTTGCGGATCTGCTCTGTATAATTCACTCATATAGTTCGTTTACTCTTTCCTGCTGTTTCCATTGACTTGTATACTTTTGTAGGTGATTAATGGACTGCCAATCTAGTCACACATTTGATTCAGATGAAAGTGATATTGATATTCAGACTGAAATTTATGAGAAGGGTGGGAGTATAGACGATATTCGTAATGACTTGGATTTTTGCTTGCGTGACGATGATAAGGTAGCAGAACAATCTGTTGTTGATTTGCCTATGGATGGAGTAGAACCATACATAGGTATGGAGTTCAGTTCTAGAGATGAAGCTAGAGAATTCTATGTTAATTATGGTAGGCGTGTTGGATTCACCGTTCGAATACATCATAATCGTCGTTCCCGTGTAAACAATCAGGTGATTGGTCAGGATTTTGTCTGCTCAAAAGAAGGATTTCGTGCTAAGAAGTATGTATGCAGAAAAGACAGGATACTTCCAGCACCACCAATTACTCGAGAGGGATGTCAAGCAATGATGAGATTGGCTTTAAGGGATGGAGGGAAGTGGGCTGTCACTAAATTTGTTAAAGATCATAATCATCTGTTACTGAGTCCTAGTAAAGTCCCATGGAAAGGATCTGGAAAAAACTTGAGCGAGGTATGTTTTAGGCTTGTTTGTTTTAATAACTAATATACTCTCCCATATGCATTTCTATGGATTATTGCCTGTCTTGTTATAATTCAGGGTGTATTGGTTTTGTTTCCTATCTTGTTGGTTATCAAACTTGCTTTATCATGACCTTACTTGAACAAGATTTGTCAATAATTTGTACAACTATGTCCTTGAGTTCAAGCTTTGCTTTGTCAGTTTGCATTAGAAAACTATTAAATCATCAAACCCTAGAATCGAACTTTTGGTTTGACAATTGTCTTTTGTGTAGAAAGAAAAGGCATTGAGGACCTTGTGGTTCTTACTTCTTTTTTCCAACATGCTTGATGGGGTACCTTGAATTGGATTTTTCTTTGAAATTCAGTTGTTGTCATCGCTACTACAGCTGCGAGATTTAGAATGAATAATTGAAATTCTAGTTTGTGTTCCTTTCCCTTTAAGTGGTAGAGTTTCTTTTATCATCAATTTTATGTTGTGTATTCTATAATACTGCCATTGTCACTTGTCGGTTGGTTAATGTAATATAAAATATCAACTTTAGGGTCAACATTTTATCAATGATTTTACATCTAACATATTTCGTGTCGAGAGGAAGCCATCTCTAGTCTATTCCCATGGTTTTGCCATAGTTTGACAGCACTATTCATTCATCTAATTGTCTAGCCAAAACCATCTTTTTCTTAAATGGATCTTCAGTTTATGTTTCTATATCAATATGATTATCTGGCATGCACCCAAACGTGTTTATTATTCTACCTTTTGACTAAATTGGTAAGAGTTAACCTTCCAGCTTTTCAGTTTGAATGGTTATGATTCTTCATTTTCTTCATATCTGGAATTCTTATTTGAAAGCATTAATGTAACCATTCTCTTGAAGCTTTTAGCTTTTATCATCTTTTATCATCTTTTATCATCTTTTATCATCTTTAGCTTTTCATCCTGCGCTTGTTCTTTCGCAGGATGAAAAGGATAAGCGGATTCGAGAGTTATCTCTGGAGTTGTACAATGAGAGGCAGAAATATAAGAGAAAATGTGCTGCATATGAAGAACAATTGAAAACAATTTGGAAGGAGTTGGAAATGCACACAGAATGTATATCAAACAAAGTTGCAGAAGTAGTAAAAAGCATTAGAGAAGTTGAGGAGGAAGAAGAATCAAAAGGTTCGAATGAAAGGTGGATTTAAATTATCATAACTGCACTAACTTATCATATATTATTATATCTTAGGTATGGGTTTTTGGTATCCAAAATTTAACTCTCATTTGTAGATGGATAATGACTTCTTTGAGAAGCATTTTAGTGTATAAAGTATTTATCCATATGGCATGCTGCTTGAAATCTGGAAACTTGTGTGACCTGGCAATGACGTGGATTTTGTCATACTAGATAATAGATATAAACGTATCTATTAAAAGGAGACAAAA

Coding sequence (CDS)

ATGGACTGCCAATCTAGTCACACATTTGATTCAGATGAAAGTGATATTGATATTCAGACTGAAATTTATGAGAAGGGTGGGAGTATAGACGATATTCGTAATGACTTGGATTTTTGCTTGCGTGACGATGATAAGGTGATTGGTCAGGATTTTGTCTGCTCAAAAGAAGGATTTCGTGCTAAGAAGTATGTATGCAGAAAAGACAGGATACTTCCAGCACCACCAATTACTCGAGAGGGATGTCAAGCAATGATGAGATTGGCTTTAAGGGATGGAGGGAAGTGGGCTGTCACTAAATTTGTTAAAGATCATAATCATCTGTTACTGAGTCCTAGTAAAGTCCCATGGAAAGGATCTGGAAAAAACTTGAGCGAGGATGAAAAGGATAAGCGGATTCGAGAGTTATCTCTGGAGTTGTACAATGAGAGGCAGAAATATAAGAGAAAATGTGCTGCATATGAAGAACAATTGAAAACAATTTGGAAGGAGTTGGAAATGCACACAGAATGTATATCAAACAAAGTTGCAGAAGTAGTAAAAAGCATTAGAGAAGTTGAGGAGGAAGAAGAATCAAAAGGTTCGAATGAAAGGTGGATTTAA

Protein sequence

MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVIGQDFVCSKEGFRAKKYVCRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLSEDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIREVEEEEESKGSNERWI

Homology

[Close]

BLAST of Cucsat.G16774.T13 vs. ExPASy Swiss-Prot
Match: Q9SZL8 (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.9e-13
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 41  RDDDKVIGQDFVCSKEGFRAKKYVCRKDRILPAP-PITREGCQAMMRLALRDGGKWAVTK 100
           R D  +I + FVC+KEGFR       KDR +  P  ITR GC+A + + ++D GKW V+ 
Sbjct: 109 RRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSG 168

Query: 101 FVKDHNHLLLSPSKVPWKGSGKNLSEDEK 129
           FVKDHNH L+ P +V    S + +S   K
Sbjct: 169 FVKDHNHELVPPDQVHCLRSHRQISGPAK 197

[Close]

BLAST of Cucsat.G16774.T13 vs. ExPASy Swiss-Prot
Match: Q3E7I5 (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.0e-05
Identity = 26/68 (38.24%), Postives = 34/68 (50.00%), Query Frame = 0


Query: 41  RDDDKVIGQDFVCSKEGFRAKKYVCRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKF 100
           R D  V  + FVCSKEGF+                 +R GC A +R+  RD GKW + + 
Sbjct: 79  RTDGTVSSRRFVCSKEGFQLN---------------SRTGCTAFIRVQRRDTGKWVLDQI 131

Query: 101 VKDHNHLL 109
            K+HNH L
Sbjct: 139 QKEHNHEL 131

[Close]

BLAST of Cucsat.G16774.T13 vs. ExPASy Swiss-Prot
Match: Q9M8J3 (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.5e-05
Identity = 25/66 (37.88%), Postives = 33/66 (50.00%), Query Frame = 0


Query: 41  RDDDKVIGQDFVCSKEGFRAKKYVCRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKF 100
           R D  V  + FVCSKEGF+                 +R GC A +R+  RD GKW + + 
Sbjct: 64  RTDGTVSSRRFVCSKEGFQLN---------------SRTGCPAFIRVQRRDTGKWVLDQI 114

Query: 101 VKDHNH 107
            K+HNH
Sbjct: 124 QKEHNH 114

[Close]

BLAST of Cucsat.G16774.T13 vs. NCBI nr
Match: XP_004152100.1 (protein FAR1-RELATED SEQUENCE 5 [Cucumis sativus] >XP_031739604.1 protein FAR1-RELATED SEQUENCE 5 [Cucumis sativus] >KGN53084.1 hypothetical protein Csa_015227 [Cucumis sativus])

HSP 1 Score: 371 bits (953), Expect = 2.37e-128
Identity = 199/255 (78.04%), Postives = 199/255 (78.04%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKV-------------- 60
           MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKV              
Sbjct: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE 60

Query: 61  ------------------------------------------IGQDFVCSKEGFRAKKYV 120
                                                     IGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180
           CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS
Sbjct: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180

Query: 181 EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE 199
           EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE
Sbjct: 181 EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE 240

[Close]

BLAST of Cucsat.G16774.T13 vs. NCBI nr
Match: XP_008453975.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Cucumis melo] >KAA0044601.1 protein FAR1-RELATED SEQUENCE 5-like [Cucumis melo var. makuwa])

HSP 1 Score: 363 bits (931), Expect = 5.33e-125
Identity = 196/255 (76.86%), Postives = 197/255 (77.25%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKV-------------- 60
           MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKV              
Sbjct: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDFPMDGVE 60

Query: 61  ------------------------------------------IGQDFVCSKEGFRAKKYV 120
                                                     IGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180
           CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS
Sbjct: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180

Query: 181 EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE 199
           EDEKDKRIR+LSLELYNERQKYKRKCAAYEEQLKTI KELEMHTECISNKVAEVVKSIRE
Sbjct: 181 EDEKDKRIRDLSLELYNERQKYKRKCAAYEEQLKTILKELEMHTECISNKVAEVVKSIRE 240

[Close]

BLAST of Cucsat.G16774.T13 vs. NCBI nr
Match: XP_038902135.1 (protein FAR1-RELATED SEQUENCE 5 [Benincasa hispida] >XP_038902142.1 protein FAR1-RELATED SEQUENCE 5 [Benincasa hispida])

HSP 1 Score: 347 bits (890), Expect = 9.68e-119
Identity = 190/256 (74.22%), Postives = 195/256 (76.17%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKV-------------- 60
           MDCQSSHTFDSDESDIDIQTEI EKGGSIDDIRNDLDFCLRDDDKV              
Sbjct: 1   MDCQSSHTFDSDESDIDIQTEICEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVG 60

Query: 61  ------------------------------------------IGQDFVCSKEGFRAKKYV 120
                                                     IGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNL- 180
           CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPW+GSGKNL 
Sbjct: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180

Query: 181 SEDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIR 199
           +EDEKDKRI+ELS+ELYNERQKYKRKCAAYEEQLKTI KELEMHTECISNKVAEVVKSIR
Sbjct: 181 NEDEKDKRIQELSIELYNERQKYKRKCAAYEEQLKTILKELEMHTECISNKVAEVVKSIR 240

[Close]

BLAST of Cucsat.G16774.T13 vs. NCBI nr
Match: XP_022932719.1 (protein FAR1-RELATED SEQUENCE 5-like [Cucurbita moschata])

HSP 1 Score: 326 bits (835), Expect = 2.28e-110
Identity = 178/256 (69.53%), Postives = 188/256 (73.44%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKV-------------- 60
           MDCQS+HTFDSDESDIDIQ EIYEKGGSIDDI  DLDFCLR+DDKV              
Sbjct: 1   MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKVAEQSVVDLPMDGAE 60

Query: 61  ------------------------------------------IGQDFVCSKEGFRAKKYV 120
                                                     IGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFGSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNL- 180
            RKDRILPAPPITREGCQAM+RLALRDGGKWAVTKFVKDHNHLLLSPSKVPW+GSGKNL 
Sbjct: 121 SRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180

Query: 181 SEDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIR 199
           +EDEKDKRIRELSLELYNE+QK KRKCAAYEEQLK + KELEMHTECISNKVAEVVKSIR
Sbjct: 181 TEDEKDKRIRELSLELYNEKQKCKRKCAAYEEQLKAVLKELEMHTECISNKVAEVVKSIR 240

[Close]

BLAST of Cucsat.G16774.T13 vs. NCBI nr
Match: XP_023539030.1 (protein FAR1-RELATED SEQUENCE 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325 bits (834), Expect = 3.24e-110
Identity = 178/256 (69.53%), Postives = 188/256 (73.44%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKV-------------- 60
           MDCQS+HTFDSDESDIDIQ EIYEKGGSIDDI  DLDFCLR+DDKV              
Sbjct: 1   MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKVAEQSVVDLPMDGAE 60

Query: 61  ------------------------------------------IGQDFVCSKEGFRAKKYV 120
                                                     IGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFGSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNL- 180
            RKDRILPAPPITREGCQAM+RLALRDGGKWAVTKFVKDHNHLLLSPSKVPW+GSGKNL 
Sbjct: 121 SRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180

Query: 181 SEDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIR 199
           +EDEKDKRIRELSLELYNE+QK KRKCAAYEEQLK + KELEMHTECISNKVAEVVKSIR
Sbjct: 181 TEDEKDKRIRELSLELYNEKQKCKRKCAAYEEQLKAVLKELEMHTECISNKVAEVVKSIR 240

[Close]

BLAST of Cucsat.G16774.T13 vs. ExPASy TrEMBL
Match: A0A0A0KW49 (FAR1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015740 PE=4 SV=1)

HSP 1 Score: 371 bits (953), Expect = 1.15e-128
Identity = 199/255 (78.04%), Postives = 199/255 (78.04%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKV-------------- 60
           MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKV              
Sbjct: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE 60

Query: 61  ------------------------------------------IGQDFVCSKEGFRAKKYV 120
                                                     IGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180
           CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS
Sbjct: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180

Query: 181 EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE 199
           EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE
Sbjct: 181 EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE 240

[Close]

BLAST of Cucsat.G16774.T13 vs. ExPASy TrEMBL
Match: A0A5A7TSR9 (Protein FAR1-RELATED SEQUENCE 5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003520 PE=4 SV=1)

HSP 1 Score: 363 bits (931), Expect = 2.58e-125
Identity = 196/255 (76.86%), Postives = 197/255 (77.25%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKV-------------- 60
           MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKV              
Sbjct: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDFPMDGVE 60

Query: 61  ------------------------------------------IGQDFVCSKEGFRAKKYV 120
                                                     IGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180
           CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS
Sbjct: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180

Query: 181 EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE 199
           EDEKDKRIR+LSLELYNERQKYKRKCAAYEEQLKTI KELEMHTECISNKVAEVVKSIRE
Sbjct: 181 EDEKDKRIRDLSLELYNERQKYKRKCAAYEEQLKTILKELEMHTECISNKVAEVVKSIRE 240

[Close]

BLAST of Cucsat.G16774.T13 vs. ExPASy TrEMBL
Match: A0A1S3BX14 (protein FAR1-RELATED SEQUENCE 5-like OS=Cucumis melo OX=3656 GN=LOC103494535 PE=4 SV=1)

HSP 1 Score: 363 bits (931), Expect = 2.58e-125
Identity = 196/255 (76.86%), Postives = 197/255 (77.25%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKV-------------- 60
           MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKV              
Sbjct: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDFPMDGVE 60

Query: 61  ------------------------------------------IGQDFVCSKEGFRAKKYV 120
                                                     IGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180
           CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS
Sbjct: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180

Query: 181 EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE 199
           EDEKDKRIR+LSLELYNERQKYKRKCAAYEEQLKTI KELEMHTECISNKVAEVVKSIRE
Sbjct: 181 EDEKDKRIRDLSLELYNERQKYKRKCAAYEEQLKTILKELEMHTECISNKVAEVVKSIRE 240

[Close]

BLAST of Cucsat.G16774.T13 vs. ExPASy TrEMBL
Match: A0A6J1EXT6 (protein FAR1-RELATED SEQUENCE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111439184 PE=4 SV=1)

HSP 1 Score: 326 bits (835), Expect = 1.11e-110
Identity = 178/256 (69.53%), Postives = 188/256 (73.44%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKV-------------- 60
           MDCQS+HTFDSDESDIDIQ EIYEKGGSIDDI  DLDFCLR+DDKV              
Sbjct: 1   MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKVAEQSVVDLPMDGAE 60

Query: 61  ------------------------------------------IGQDFVCSKEGFRAKKYV 120
                                                     IGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFGSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNL- 180
            RKDRILPAPPITREGCQAM+RLALRDGGKWAVTKFVKDHNHLLLSPSKVPW+GSGKNL 
Sbjct: 121 SRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180

Query: 181 SEDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIR 199
           +EDEKDKRIRELSLELYNE+QK KRKCAAYEEQLK + KELEMHTECISNKVAEVVKSIR
Sbjct: 181 TEDEKDKRIRELSLELYNEKQKCKRKCAAYEEQLKAVLKELEMHTECISNKVAEVVKSIR 240

[Close]

BLAST of Cucsat.G16774.T13 vs. ExPASy TrEMBL
Match: A0A6J1CVL2 (protein FAR1-RELATED SEQUENCE 5-like OS=Momordica charantia OX=3673 GN=LOC111014639 PE=4 SV=1)

HSP 1 Score: 325 bits (833), Expect = 2.23e-110
Identity = 177/256 (69.14%), Postives = 188/256 (73.44%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKV-------------- 60
           MDC+S+HTFDSDESD+DIQ EIYEKGGSIDDI  +L+FCLR+DDKV              
Sbjct: 1   MDCESNHTFDSDESDVDIQAEIYEKGGSIDDIHKNLNFCLREDDKVAEQSVVDFPVDGVE 60

Query: 61  ------------------------------------------IGQDFVCSKEGFRAKKYV 120
                                                     IGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFGSRDEAREFYVNYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNL- 180
           CRKDRILPAPPITREGCQAM+RLALRDGGKWAVTKFVKDHNHLLLSPSKVPW+GSGKNL 
Sbjct: 121 CRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180

Query: 181 SEDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIR 199
            EDEKDKRIRELS+ELYNERQK KRKCAAYEEQLK I KELE HTECISNKVAEVVKSIR
Sbjct: 181 GEDEKDKRIRELSVELYNERQKCKRKCAAYEEQLKAILKELETHTECISNKVAEVVKSIR 240

The following BLAST results are available for this feature:

BLAST of Cucsat.G16774.T13 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL8	5.9e-13	43.82	Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=...	[more]
Q3E7I5	2.0e-05	38.24	Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 S...	[more]
Q9M8J3	3.5e-05	37.88	Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=...	[more]

BLAST of Cucsat.G16774.T13 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152100.1	2.37e-128	78.04	protein FAR1-RELATED SEQUENCE 5 [Cucumis sativus] >XP_031739604.1 protein FAR1-R...	[more]
XP_008453975.1	5.33e-125	76.86	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Cucumis melo] >KAA0044601.1 pro...	[more]
XP_038902135.1	9.68e-119	74.22	protein FAR1-RELATED SEQUENCE 5 [Benincasa hispida] >XP_038902142.1 protein FAR1...	[more]
XP_022932719.1	2.28e-110	69.53	protein FAR1-RELATED SEQUENCE 5-like [Cucurbita moschata]	[more]
XP_023539030.1	3.24e-110	69.53	protein FAR1-RELATED SEQUENCE 5-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cucsat.G16774.T13 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW49	1.15e-128	78.04	FAR1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015740 PE=4 S...	[more]
A0A5A7TSR9	2.58e-125	76.86	Protein FAR1-RELATED SEQUENCE 5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BX14	2.58e-125	76.86	protein FAR1-RELATED SEQUENCE 5-like OS=Cucumis melo OX=3656 GN=LOC103494535 PE=...	[more]
A0A6J1EXT6	1.11e-110	69.53	protein FAR1-RELATED SEQUENCE 5-like OS=Cucurbita moschata OX=3662 GN=LOC1114391...	[more]
A0A6J1CVL2	2.23e-110	69.14	protein FAR1-RELATED SEQUENCE 5-like OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 136..156
None	No IPR available	PANTHER	PTHR46328	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	coord: 1..46 coord: 43..192
None	No IPR available	PANTHER	PTHR46328:SF12	FAR-RED IMPAIRED RESPONSE-LIKE PROTEIN	coord: 1..46 coord: 43..192
IPR004330	FAR1 DNA binding domain	PFAM	PF03101	FAR1	coord: 40..109 e-value: 2.0E-16 score: 60.5

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16774	Cucsat.G16774	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16774.T13.E1	Cucsat.G16774.T13.E1	exon
Cucsat.G16774.T13.E2	Cucsat.G16774.T13.E2	exon
Cucsat.G16774.T13.E3	Cucsat.G16774.T13.E3	exon
Cucsat.G16774.T13.E4	Cucsat.G16774.T13.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16774.T13.C3	Cucsat.G16774.T13.C3	CDS
Cucsat.G16774.T13.C2	Cucsat.G16774.T13.C2	CDS
Cucsat.G16774.T13.C1	Cucsat.G16774.T13.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16774.T13	Cucsat.G16774.T13-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016120	carotene biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0090471	9,15,9'-tri-cis-zeta-carotene isomerase activity
molecular_function	GO:0016853	isomerase activity