Cucsat.G16774.T11 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16774.T11
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	15-cis-zeta-carotene isomerase, chloroplastic
Location	ctg24: 927399 .. 929780 (-)
RNA-Seq Expression	Cucsat.G16774.T11
Synteny	Cucsat.G16774.T11

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCTGCCAACGTTAAATGGTCCCCATGTTCGTAACGCTCTTTTAGAAGTACGTTTTCGGGTCTAATTCGTTATCAGGTCTCGCTTTACTATGCCCAATTTTGCGGAATGGAATGTTATCCAATTTTGTCTCTTTTTTAATTTTATTCTCATTTCTCTTGGGCAATGTGCGTCTGTTGTGGGATGGGAAATGTTGATAAAACCTTCTCCCGGTAGTTTTATGTCTTGGAATTTCAATCTTTTCTTCATTTCTTGTAACTTTTGATGGGTTGTTGAGATAGAACATTGAGGCATTTGATATTTGCGGATCTGCTCTGTATAATTCACTCATATAGTTCGTTTACTCTTTCCTGCTGTTTCCATTGACTTGTATACTTTTGTAGGTGATTAATGGACTGCCAATCTAGTCACACATTTGATTCAGATGAAAGTGATATTGATATTCAGACTGAAATTTATGAGAAGGGTGGGAGTATAGACGATATTCGTAATGACTTGGATTTTTGCTTGCGTGACGATGATAAGGTAGCAGAACAATCTGTTGTTGATTTGCCTATGGATGGAGTAGAACCATACATAGGTATGGAGTTCAGTTCTAGAGATGAAGCTAGAGAATTCTATGTTAATTATGGTAGGCGTGTTGGATTCACCGTTCGAATACATCATAATCGTCGTTCCCGTGTAAACAATCAGGTGATTGGTCAGGATTTTGTCTGCTCAAAAGAAGGATTTCGTGCTAAGAAGTATGTATGCAGAAAAGACAGGATACTTCCAGCACCACCAATTACTCGAGAGGGATGTCAAGCAATGATGAGATTGGCTTTAAGGGATGGAGGGAAGTGGGCTGTCACTAAATTTGTTAAAGATCATAATCATCTGTTACTGAGTCCTAGTAAAGTCCCATGGAAAGGATCTGGAAAAAACTTGAGCGAGGTATGTTTTAGGCTTGTTTGTTTTAATAACTAATATACTCTCCCATATGCATTTCTATGGATTATTGCCTGTCTTGTTATAATTCAGGGTGTATTGGTTTTGTTTCCTATCTTGTTGGTTATCAAACTTGCTTTATCATGACCTTACTTGAACAAGATTTGTCAATAATTTGTACAACTATGTCCTTGAGTTCAAGCTTTGCTTTGTCAGTTTGCATTAGAAAACTATTAAATCATCAAACCCTAGAATCGAACTTTTGGTTTGACAATTGTCTTTTGTGTAGAAAGAAAAGGCATTGAGGACCTTGTGGTTCTTACTTCTTTTTTCCAACATGCTTGATGGGGTACCTTGAATTGGATTTTTCTTTGAAATTCAGTTGTTGTCATCGCTACTACAGCTGCGAGATTTAGAATGAATAATTGAAATTCTAGTTTGTGTTCCTTTCCCTTTAAGTGGTAGAGTTTCTTTTATCATCAATTTTATGTTGTGTATTCTATAATACTGCCATTGTCACTTGTCGGTTGGTTAATGTAATATAAAATATCAACTTTAGGGTCAACATTTTATCAATGATTTTACATCTAACATATTTCGTGTCGAGAGGAAGCCATCTCTAGTCTATTCCCATGGTTTTGCCATAGTTTGACAGCACTATTCATTCATCTAATTGTCTAGCCAAAACCATCTTTTTCTTAAATGGATCTTCAGTTTATGTTTCTATATCAATATGATTATCTGGCATGCACCCAAACGTGTTTATTATTCTACCTTTTGACTAAATTGGTAAGAGTTAACCTTCCAGCTTTTCAGTTTGAATGGTTATGATTCTTCATTTTCTTCATATCTGGAATTCTTATTTGAAAGCATTAATGTAACCATTCTCTTGAAGCTTTTAGCTTTTATCATCTTTTATCATCTTTTATCATCTTTTATCATCTTTAGCTTTTCATCCTGCGCTTGTTCTTTCGCAGGATGAAAAGGATAAGCGGATTCGAGAGTTATCTCTGGAGTTGTACAATGAGAGGCAGAAATATAAGAGAAAATGTGCTGCATATGAAGAACAATTGAAAACAATTTGGAAGGAGTTGGAAATGCACACAGAATGTATATCAAACAAAGTTGCAGAAGTAGTAAAAAGCATTAGAGAAGTTGAGGAGGAAGAAGAATCAAAAGGTTCGAATGAAAGGTGGATTTAAATTATCATAACTGCACTAACTTATCATATATTATTATATCTTAGGTATGGGTTTTTGGTATCCAAAATTTAACTCTCATTTGTAGATGGATAATGACTTCTTTGAGAAGCATTTTAGTGTATAAAGTATTTATCCATATGGCATGCTGCTTGAAATCTGGAAACTTGTGTGACCTGGCAATGACGTGGATTTTGTCATACTAGATAATAGATATAAACGTATCTATTAAAAGGAGACAAAAGGTATCTTTGGT

Coding sequence (CDS)

ATGGACTGCCAATCTAGTCACACATTTGATTCAGATGAAAGTGATATTGATATTCAGACTGAAATTTATGAGAAGGGTGGGAGTATAGACGATATTCGTAATGACTTGGATTTTTGCTTGCGTGACGATGATAAGGTAGCAGAACAATCTGTTGTTGATTTGCCTATGGATGGAGTAGAACCATACATAGGTATGGAGTTCAGTTCTAGAGATGAAGCTAGAGAATTCTATGTTAATTATGGTAGGCGTGTTGGATTCACCGTTCGAATACATCATAATCGTCGTTCCCGTGTAAACAATCAGGTGATTGGTCAGGATTTTGTCTGCTCAAAAGAAGGATTTCGTGCTAAGAAGTATGTATGCAGAAAAGACAGGATACTTCCAGCACCACCAATTACTCGAGAGGGATGTCAAGCAATGATGAGATTGGCTTTAAGGGATGGAGGGAAGTGGGCTGTCACTAAATTTGTTAAAGATCATAATCATCTGTTACTGAGTCCTAGTAAAGTCCCATGGAAAGGATCTGGAAAAAACTTGAGCGAGGATGAAAAGGATAAGCGGATTCGAGAGTTATCTCTGGAGTTGTACAATGAGAGGCAGAAATATAAGAGAAAATGTGCTGCATATGAAGAACAATTGAAAACAATTTGGAAGGAGTTGGAAATGCACACAGAATGTATATCAAACAAAGTTGCAGAAGTAGTAAAAAGCATTAGAGAAGTTGAGGAGGAAGAAGAATCAAAAGGTTCGAATGAAAGGTGGATTTAA

Protein sequence

MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVEPYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVCRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLSEDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIREVEEEEESKGSNERWI

Homology

[Close]

BLAST of Cucsat.G16774.T11 vs. ExPASy Swiss-Prot
Match: Q9SZL8 (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.9e-26
Identity = 69/196 (35.20%), Postives = 104/196 (53.06%), Query Frame = 0


Query: 10  DSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVD---------------- 69
           D++  D DI   +   GG +DD   D++    DDD + +  ++                 
Sbjct: 3   DNEVLDFDIGVGV-SSGGDVDDDAIDIEHHALDDDDMLDSPIMPCGNGLVGNSGNYFPNQ 62

Query: 70  ----LPMDGVEPYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVC 129
                 +  +EPY G+EF S + A+ FY +Y RR+GF+ R+  +RRSR +  +I + FVC
Sbjct: 63  EEEACDLLDLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVC 122

Query: 130 SKEGFRAKKYVCRKDRILPAP-PITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPS 185
           +KEGFR       KDR +  P  ITR GC+A + + ++D GKW V+ FVKDHNH L+ P 
Sbjct: 123 AKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVPPD 182

[Close]

BLAST of Cucsat.G16774.T11 vs. ExPASy Swiss-Prot
Match: Q3E7I5 (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.6e-18
Identity = 47/107 (43.93%), Postives = 60/107 (56.07%), Query Frame = 0


Query: 58  GVEPYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAK 117
           GVEPY+G+EF + +EAREFY  Y  R GF VR     RSR +  V  + FVCSKEGF+  
Sbjct: 40  GVEPYVGLEFDTAEEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN 99

Query: 118 KYVCRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLL 165
                          +R GC A +R+  RD GKW + +  K+HNH L
Sbjct: 100 ---------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131

[Close]

BLAST of Cucsat.G16774.T11 vs. ExPASy Swiss-Prot
Match: Q9M8J3 (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-17
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 58  GVEPYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAK 117
           G+EPY+G+EF + +EAR++Y +Y  R GF VR     RSR +  V  + FVCSKEGF+  
Sbjct: 25  GLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN 84

Query: 118 KYVCRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNH 163
                          +R GC A +R+  RD GKW + +  K+HNH
Sbjct: 85  ---------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNH 114

[Close]

BLAST of Cucsat.G16774.T11 vs. ExPASy Swiss-Prot
Match: Q9SSQ4 (Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=FRS6 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-13
Identity = 46/140 (32.86%), Postives = 68/140 (48.57%), Query Frame = 0


Query: 35  DLDFCLRDDDKVAEQS----------VVDLPMDGVEPYIGMEFSSRDEAREFYVNYGRRV 94
           D+ FC  ++ K  E++          +VD   +   P +GMEF S D+A  +Y  Y   V
Sbjct: 49  DVGFCQNEERKSEEETMGGFDEQSGLLVDERKEFDAPAVGMEFESYDDAYNYYNCYASEV 108

Query: 95  GFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVCRKDRILPAPPITREGCQAMMRLA 154
           GF VR+ ++   R + +  G    CS +GF+    V R  +       TR GC AM+R+ 
Sbjct: 109 GFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVNRVRK------ETRTGCPAMIRMR 168

Query: 155 LRDGGKWAVTKFVKDHNHLL 165
             D  +W V +   DHNHLL
Sbjct: 169 QVDSKRWRVVEVTLDHNHLL 182

[Close]

BLAST of Cucsat.G16774.T11 vs. ExPASy Swiss-Prot
Match: Q9ZVC9 (Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana OX=3702 GN=FRS3 PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 4.9e-12
Identity = 57/201 (28.36%), Postives = 93/201 (46.27%), Query Frame = 0


Query: 60  EPYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKY 119
           EP +GMEF+S  EA+ FY  Y R++GFT ++      R +  V  ++FVCS    R+K+ 
Sbjct: 48  EPCVGMEFNSEKEAKSFYDEYSRQLGFTSKL----LPRTDGSVSVREFVCSSSSKRSKRR 107

Query: 120 VCRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNL 179
           +              E C AM+R+ L+   KW VTKFVK+H H L S + +      ++ 
Sbjct: 108 L-------------SESCDAMVRIELQGHEKWVVTKFVKEHTHGLASSNMLHCLRPRRHF 167

Query: 180 SEDEK---DKRIRELSLELY---NERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAE 239
           +  EK    + +   S  +Y   +   +  R  +      +TI ++     E      AE
Sbjct: 168 ANSEKSSYQEGVNVPSGMMYVSMDANSRGARNASMATNTKRTIGRDAHNLLEYFKRMQAE 227

Query: 240 VVKSIREVEEEEESKGSNERW 255
                  V+ +E+++ SN  W
Sbjct: 228 NPGFFYAVQLDEDNQMSNVFW 231

[Close]

BLAST of Cucsat.G16774.T11 vs. NCBI nr
Match: XP_004152100.1 (protein FAR1-RELATED SEQUENCE 5 [Cucumis sativus] >XP_031739604.1 protein FAR1-RELATED SEQUENCE 5 [Cucumis sativus] >KGN53084.1 hypothetical protein Csa_015227 [Cucumis sativus])

HSP 1 Score: 508 bits (1307), Expect = 2.57e-181
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE 60
           MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE
Sbjct: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE 60

Query: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
           PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180
           CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS
Sbjct: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180

Query: 181 EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE 240
           EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE
Sbjct: 181 EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE 240

Query: 241 VEEEEESKGSNERWI 255
           VEEEEESKGSNERWI
Sbjct: 241 VEEEEESKGSNERWI 255

[Close]

BLAST of Cucsat.G16774.T11 vs. NCBI nr
Match: XP_008453975.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Cucumis melo] >KAA0044601.1 protein FAR1-RELATED SEQUENCE 5-like [Cucumis melo var. makuwa])

HSP 1 Score: 498 bits (1281), Expect = 2.36e-177
Identity = 251/255 (98.43%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE 60
           MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVD PMDGVE
Sbjct: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDFPMDGVE 60

Query: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
           PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180
           CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS
Sbjct: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180

Query: 181 EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE 240
           EDEKDKRIR+LSLELYNERQKYKRKCAAYEEQLKTI KELEMHTECISNKVAEVVKSIRE
Sbjct: 181 EDEKDKRIRDLSLELYNERQKYKRKCAAYEEQLKTILKELEMHTECISNKVAEVVKSIRE 240

Query: 241 VEEEEESKGSNERWI 255
           VEEEEESKG NERWI
Sbjct: 241 VEEEEESKGLNERWI 255

[Close]

BLAST of Cucsat.G16774.T11 vs. NCBI nr
Match: XP_038902135.1 (protein FAR1-RELATED SEQUENCE 5 [Benincasa hispida] >XP_038902142.1 protein FAR1-RELATED SEQUENCE 5 [Benincasa hispida])

HSP 1 Score: 481 bits (1237), Expect = 1.25e-170
Identity = 245/256 (95.70%), Postives = 250/256 (97.66%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE 60
           MDCQSSHTFDSDESDIDIQTEI EKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGV 
Sbjct: 1   MDCQSSHTFDSDESDIDIQTEICEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVG 60

Query: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
           PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNL- 180
           CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPW+GSGKNL 
Sbjct: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180

Query: 181 SEDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIR 240
           +EDEKDKRI+ELS+ELYNERQKYKRKCAAYEEQLKTI KELEMHTECISNKVAEVVKSIR
Sbjct: 181 NEDEKDKRIQELSIELYNERQKYKRKCAAYEEQLKTILKELEMHTECISNKVAEVVKSIR 240

Query: 241 EVEEEEESKGSNERWI 255
           EVEEEEES+G NE WI
Sbjct: 241 EVEEEEESEGLNEGWI 256

[Close]

BLAST of Cucsat.G16774.T11 vs. NCBI nr
Match: XP_022932719.1 (protein FAR1-RELATED SEQUENCE 5-like [Cucurbita moschata])

HSP 1 Score: 459 bits (1181), Expect = 4.29e-162
Identity = 232/256 (90.62%), Postives = 242/256 (94.53%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE 60
           MDCQS+HTFDSDESDIDIQ EIYEKGGSIDDI  DLDFCLR+DDKVAEQSVVDLPMDG E
Sbjct: 1   MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKVAEQSVVDLPMDGAE 60

Query: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
           PYIGMEF SRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFGSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNL- 180
            RKDRILPAPPITREGCQAM+RLALRDGGKWAVTKFVKDHNHLLLSPSKVPW+GSGKNL 
Sbjct: 121 SRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180

Query: 181 SEDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIR 240
           +EDEKDKRIRELSLELYNE+QK KRKCAAYEEQLK + KELEMHTECISNKVAEVVKSIR
Sbjct: 181 TEDEKDKRIRELSLELYNEKQKCKRKCAAYEEQLKAVLKELEMHTECISNKVAEVVKSIR 240

Query: 241 EVEEEEESKGSNERWI 255
           EVE+EE S G N+ W+
Sbjct: 241 EVEDEEHSGGLNQGWV 256

[Close]

BLAST of Cucsat.G16774.T11 vs. NCBI nr
Match: XP_023539030.1 (protein FAR1-RELATED SEQUENCE 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 459 bits (1180), Expect = 6.09e-162
Identity = 232/256 (90.62%), Postives = 242/256 (94.53%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE 60
           MDCQS+HTFDSDESDIDIQ EIYEKGGSIDDI  DLDFCLR+DDKVAEQSVVDLPMDG E
Sbjct: 1   MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKVAEQSVVDLPMDGAE 60

Query: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
           PYIGMEF SRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFGSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNL- 180
            RKDRILPAPPITREGCQAM+RLALRDGGKWAVTKFVKDHNHLLLSPSKVPW+GSGKNL 
Sbjct: 121 SRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180

Query: 181 SEDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIR 240
           +EDEKDKRIRELSLELYNE+QK KRKCAAYEEQLK + KELEMHTECISNKVAEVVKSIR
Sbjct: 181 TEDEKDKRIRELSLELYNEKQKCKRKCAAYEEQLKAVLKELEMHTECISNKVAEVVKSIR 240

Query: 241 EVEEEEESKGSNERWI 255
           EVE+EE S G N+ W+
Sbjct: 241 EVEDEEHSGGWNQGWV 256

[Close]

BLAST of Cucsat.G16774.T11 vs. ExPASy TrEMBL
Match: A0A0A0KW49 (FAR1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015740 PE=4 SV=1)

HSP 1 Score: 508 bits (1307), Expect = 1.24e-181
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE 60
           MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE
Sbjct: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE 60

Query: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
           PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180
           CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS
Sbjct: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180

Query: 181 EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE 240
           EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE
Sbjct: 181 EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE 240

Query: 241 VEEEEESKGSNERWI 255
           VEEEEESKGSNERWI
Sbjct: 241 VEEEEESKGSNERWI 255

[Close]

BLAST of Cucsat.G16774.T11 vs. ExPASy TrEMBL
Match: A0A5A7TSR9 (Protein FAR1-RELATED SEQUENCE 5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003520 PE=4 SV=1)

HSP 1 Score: 498 bits (1281), Expect = 1.14e-177
Identity = 251/255 (98.43%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE 60
           MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVD PMDGVE
Sbjct: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDFPMDGVE 60

Query: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
           PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180
           CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS
Sbjct: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180

Query: 181 EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE 240
           EDEKDKRIR+LSLELYNERQKYKRKCAAYEEQLKTI KELEMHTECISNKVAEVVKSIRE
Sbjct: 181 EDEKDKRIRDLSLELYNERQKYKRKCAAYEEQLKTILKELEMHTECISNKVAEVVKSIRE 240

Query: 241 VEEEEESKGSNERWI 255
           VEEEEESKG NERWI
Sbjct: 241 VEEEEESKGLNERWI 255

[Close]

BLAST of Cucsat.G16774.T11 vs. ExPASy TrEMBL
Match: A0A1S3BX14 (protein FAR1-RELATED SEQUENCE 5-like OS=Cucumis melo OX=3656 GN=LOC103494535 PE=4 SV=1)

HSP 1 Score: 498 bits (1281), Expect = 1.14e-177
Identity = 251/255 (98.43%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE 60
           MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVD PMDGVE
Sbjct: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDFPMDGVE 60

Query: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
           PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180
           CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS
Sbjct: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNLS 180

Query: 181 EDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIRE 240
           EDEKDKRIR+LSLELYNERQKYKRKCAAYEEQLKTI KELEMHTECISNKVAEVVKSIRE
Sbjct: 181 EDEKDKRIRDLSLELYNERQKYKRKCAAYEEQLKTILKELEMHTECISNKVAEVVKSIRE 240

Query: 241 VEEEEESKGSNERWI 255
           VEEEEESKG NERWI
Sbjct: 241 VEEEEESKGLNERWI 255

[Close]

BLAST of Cucsat.G16774.T11 vs. ExPASy TrEMBL
Match: A0A6J1EXT6 (protein FAR1-RELATED SEQUENCE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111439184 PE=4 SV=1)

HSP 1 Score: 459 bits (1181), Expect = 2.08e-162
Identity = 232/256 (90.62%), Postives = 242/256 (94.53%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE 60
           MDCQS+HTFDSDESDIDIQ EIYEKGGSIDDI  DLDFCLR+DDKVAEQSVVDLPMDG E
Sbjct: 1   MDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKVAEQSVVDLPMDGAE 60

Query: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
           PYIGMEF SRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFGSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNL- 180
            RKDRILPAPPITREGCQAM+RLALRDGGKWAVTKFVKDHNHLLLSPSKVPW+GSGKNL 
Sbjct: 121 SRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180

Query: 181 SEDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIR 240
           +EDEKDKRIRELSLELYNE+QK KRKCAAYEEQLK + KELEMHTECISNKVAEVVKSIR
Sbjct: 181 TEDEKDKRIRELSLELYNEKQKCKRKCAAYEEQLKAVLKELEMHTECISNKVAEVVKSIR 240

Query: 241 EVEEEEESKGSNERWI 255
           EVE+EE S G N+ W+
Sbjct: 241 EVEDEEHSGGLNQGWV 256

[Close]

BLAST of Cucsat.G16774.T11 vs. ExPASy TrEMBL
Match: A0A6J1CVL2 (protein FAR1-RELATED SEQUENCE 5-like OS=Momordica charantia OX=3673 GN=LOC111014639 PE=4 SV=1)

HSP 1 Score: 456 bits (1174), Expect = 2.42e-161
Identity = 229/256 (89.45%), Postives = 242/256 (94.53%), Query Frame = 0


Query: 1   MDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGVE 60
           MDC+S+HTFDSDESD+DIQ EIYEKGGSIDDI  +L+FCLR+DDKVAEQSVVD P+DGVE
Sbjct: 1   MDCESNHTFDSDESDVDIQAEIYEKGGSIDDIHKNLNFCLREDDKVAEQSVVDFPVDGVE 60

Query: 61  PYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120
           PYIGMEF SRDEAREFYVNYGRR+GFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV
Sbjct: 61  PYIGMEFGSRDEAREFYVNYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYV 120

Query: 121 CRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWKGSGKNL- 180
           CRKDRILPAPPITREGCQAM+RLALRDGGKWAVTKFVKDHNHLLLSPSKVPW+GSGKNL 
Sbjct: 121 CRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLL 180

Query: 181 SEDEKDKRIRELSLELYNERQKYKRKCAAYEEQLKTIWKELEMHTECISNKVAEVVKSIR 240
            EDEKDKRIRELS+ELYNERQK KRKCAAYEEQLK I KELE HTECISNKVAEVVKSIR
Sbjct: 181 GEDEKDKRIRELSVELYNERQKCKRKCAAYEEQLKAILKELETHTECISNKVAEVVKSIR 240

Query: 241 EVEEEEESKGSNERWI 255
           E+EEEEES G N+ WI
Sbjct: 241 EIEEEEESGGLNQGWI 256

The following BLAST results are available for this feature:

BLAST of Cucsat.G16774.T11 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL8	5.9e-26	35.20	Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=...	[more]
Q3E7I5	4.6e-18	43.93	Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 S...	[more]
Q9M8J3	3.9e-17	40.95	Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=...	[more]
Q9SSQ4	5.8e-13	32.86	Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=FRS6 PE=2 SV=...	[more]
Q9ZVC9	4.9e-12	28.36	Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana OX=3702 GN=FRS3 PE=1 SV=...	[more]

BLAST of Cucsat.G16774.T11 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152100.1	2.57e-181	100.00	protein FAR1-RELATED SEQUENCE 5 [Cucumis sativus] >XP_031739604.1 protein FAR1-R...	[more]
XP_008453975.1	2.36e-177	98.43	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Cucumis melo] >KAA0044601.1 pro...	[more]
XP_038902135.1	1.25e-170	95.70	protein FAR1-RELATED SEQUENCE 5 [Benincasa hispida] >XP_038902142.1 protein FAR1...	[more]
XP_022932719.1	4.29e-162	90.63	protein FAR1-RELATED SEQUENCE 5-like [Cucurbita moschata]	[more]
XP_023539030.1	6.09e-162	90.63	protein FAR1-RELATED SEQUENCE 5-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cucsat.G16774.T11 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW49	1.24e-181	100.00	FAR1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015740 PE=4 S...	[more]
A0A5A7TSR9	1.14e-177	98.43	Protein FAR1-RELATED SEQUENCE 5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BX14	1.14e-177	98.43	protein FAR1-RELATED SEQUENCE 5-like OS=Cucumis melo OX=3656 GN=LOC103494535 PE=...	[more]
A0A6J1EXT6	2.08e-162	90.63	protein FAR1-RELATED SEQUENCE 5-like OS=Cucurbita moschata OX=3662 GN=LOC1114391...	[more]
A0A6J1CVL2	2.42e-161	89.45	protein FAR1-RELATED SEQUENCE 5-like OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 192..212
None	No IPR available	PANTHER	PTHR46328	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	coord: 1..248
None	No IPR available	PANTHER	PTHR46328:SF12	FAR-RED IMPAIRED RESPONSE-LIKE PROTEIN	coord: 1..248
IPR004330	FAR1 DNA binding domain	PFAM	PF03101	FAR1	coord: 75..165 e-value: 5.1E-26 score: 91.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16774	Cucsat.G16774	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16774.T11.E1	Cucsat.G16774.T11.E1	exon
Cucsat.G16774.T11.E2	Cucsat.G16774.T11.E2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16774.T11.C2	Cucsat.G16774.T11.C2	CDS
Cucsat.G16774.T11.C1	Cucsat.G16774.T11.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16774.T11	Cucsat.G16774.T11-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016120	carotene biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0090471	9,15,9'-tri-cis-zeta-carotene isomerase activity
molecular_function	GO:0016853	isomerase activity