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Cucsat.G16621.T2 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GATGGTGATGATTTCTCTTCAGGTCCATTTTATTACTATGCATACTACGTAGTGGCAAACTCGTTCTGGATTCTTATTCCCTCGCTTATCGGTATACGGTGTTGGAAGAAAATTTGCATTGCAATGAGCATTGAAAGCCAAACGAAAACCAAAACCCTCTAAGTTATTACTCATCGGTTAAGTGTACTACACACAAAATTCTTGTTGTATTATTGCATGTCATTCAGTAAACAAGACATTGCCGGAATTTGAACGTTTACTTGAAAATTATCTTTGGAGTGTTGATTGATTGTATTAATAGTAGAGATGGAACCTTCAACCTCTAAGTAACAAGGTTATCTTAATTACTATAAATTAAAATTAAGCTCATTTAGTAAGGGTTGATTGAATTTAGGCTATTTGAATTTGCATATGGGTAAAGTGTTTCTTAACTTATTATTATTATTATTGTTTTATACCATTAGATTTGCTATGCAAACCTGTAAAGTTTGAGTGAACTATGACAAATGAAGAGGCATTGTTAAACTGGTGGATTTTCGCAAAGGAATTATGGTAATTAGAGTAAATGTATGGATGATTGTTAAAGAAAACTTTGAATTCAATTCTAATTGATTTTAATTAATCAAGAATTAAAAACCAATTAAACACCAAACAAAATAAAAAGTAATCTAATTTTAACTAGAATCCAAGAAAAGGGGGAAAAAATAGCAGAATGAGAATTAGGACACCCAAGTAGCCAAAAGAGAAAAAGGATATTAAGTCAAACCTATATAACATGCAATCTAAGAAATTAAAATAATTCACAAACAAACAAACAACAGAATATCAACTTAAGAGCACAAAATAATGATCCAAGATGAAGGAAAGAAAGAGATTATGAGAGATGATGCGAGGAAGTAGTCCTTTTTACTTTGCGTATAGATATCCAAAATACGATATGCGTCAAATTTCAATTGAGTGCAGTAGAGAGGGCCGAGGGGGACGTACTGTTTCTTTCAAGGGGTGAATGAGAGAGAGTAATTAAAATGAAAGAGAAAGATTGTGTAGATAAAAATAGGAAAGAAGAAGTTTGGGTAAAAAGGTAGTAGTGATAGGAAGGTGATTTTTTTTATTTTATTTTTAATTGATGAAAGAAACAATGAAGTAGAAGCTATTAATGGGAGGAATTGAGAGCTAATTCAATTTTATAGGGAGGATCTATCTCTATGAAATGATTCATGGAGATATAATTCATGGGTCACAATGCTCTTATTTAAGAGTTTTTAGATTGGATTGAAATTGTTGGAATAATTTACAATTCAAAAAGTGAGATCAAAGTAATATTAGGTTTTTAGTTGAAAGTATATGAATAATAACATCAAAGAATGTCCTTTGTTTTAAATGGCTGGAGAATAATAAGAAAAAAAATATTTTATACATCATTATCAAAAGTTTTAGGAGTTATAATAACGTGATTTTCAATCTACCGTAGATTTCTCTATCCATAAATTTTGTTGACGAAAATTCTATAATTCAGTAAAAATAATCTGAAAAAAATGTAGGGAGTGAGACTTGAACCTTCATAAAAGAGTTTAGATAATATCTTTTCACCTAGTTAACTACTAATATTGATATTATATGAGTTTTTTTTATATATTTATATAAAAAAATAAATTTAGAGGGAGCTTCCATTCCCCTATACTAAATCTGTTAATAATTACTGACATAACTTTTTAATATGTTTATAAGGTGTAAATGATATACATTATGTTCTATTGCAAGAATGTATTTCAATAGGGTAATTGTAGTCCCTACATACATGTATGAAAAGCGATTAGATTATTGTGTACACTAATATCACGCTGCATCGATATGATAGTTAGTTGACGTATAAGTTTGACGATCATTTTCACATGTTTATGTTTTAGCTATCAAACATAACGTCTACAAATTTTTCGTTGTTTTAATAATGTTGAATGGGTTTAATCGACATAAATTTTGAAGTTTTATCTTAAAGATATTTTTTTAAAACAATAAAAATTAGTTTATTACGAATTTGAGAGTTAAATTTTTACTAGAGGGTCTAATTTTAATATTTATATAAACTTAAAGGGCTCATTTGTTATAACTAAAAGTTTGTTTGAGAGCATAATTAACTGGCCTATATGTTAGGGTGTCCTTTGCAATTTCCAAAATAAATGAAGAAAATAGCATAGACGGTCACAACGGACCGGACCGGGGCGGCCGGACTCGACTCATATTTCTAAACCAAGAAGCTGCGATCTCTTCCCGACTTAAACCTCTAAAACCACAGTTTATTTCTTCTCCATCTTGAGGAGCTGCAACCCATCAATGGCAGTTCTCAAGCTCATCCTCACTCATGCTCGCCGCCATTCCTTTGCCAGACCTCCTTCTCTTTCAACTTCTCACTTCCTTCACTTTCGAAGATCACTCTCTTCCTCTCAATCTGATTCTAACCCAGATCCCGATTCTCCCCCTGATCAATCCTCTCCAAGAACCTCTCGTTCCGTTCCCATTCAGCCAGTTTCCTACGCCGTCAAGCCCAAGCCACAAGCCGATGAGAATCAAGATTCCCCAGTAACGCTTCAATCTCCACCGCCTCCACAGGGGCCGCCGCCAAGGCCTGAAGGTCGGAGGACGTGGACTCGTGAGGATGTTCGATATATGAAGGATGCTCCAACTATAACTCCTGTTTCTTATGCGGCACGTGTTGCTCCGCTTCCGGAAGATACGGGTTCGGCTTCCGGTGGAGGAGAAGAGGGTGTGGTGACTGAGCAAATGGAGGAGGAAAGGAAGAAAATTGAGGCGGCGAATCAATGGAGGAGGAGGGTTTTGAGGGTTGCGGAGGAGGAGAAAGTTACTGCTCCATTTCCGATGCTGATCAAAGTCGAGAAGAAGGAACAGAAGGTAGTTCTTGATTTGATAGACGCTATCCGGCAAGTGAAGGTCAGTGTATAAGATTGTGGTTTTAACTTTTCATGGGAAGTTTCTCTAATTCCTGCATTTTGGGAGAATTGAAAGTTGTAGATTGTAGAATATTTGTCTACATGATCTTTGAAGTTGTAAAATGAACGTGCTTTAGAAATGGTTATTGACAATCCCATCCTTTAATTTTCATTTTTTGTTCTTTTTCTTAAAATTCAAGTTCAGGCTGCTGCCAAGGGAAATTTTGATGAGACTGTTGAAGCACATGCAAGGTTGGGGGTTGATGCTAGGAAAATGGTATTGCGTTTATTATTTTTGTACTCAGTGGATTACTCGCTCTCAGTAGGAATTAAGCTTGAATGATTCTGTTACTAGCCTAGATTGGAACTACGGCATTTTAGGAGAGAAAGGAAACCTGGAAATTTCCTTACTCAACTGGTTTATTAGAATGTGATATCCGTTAACGGTTCAGTTTAACCTGACCTTAATAGAGTTTTTAAAGTAGGTTGTCAGAGGGCATATATACGAATGATTTGTCTGATTCACTATTTAAATTTGTTAAAAAGTTTAAATGTGTCTGTTGTTTACTCTGACACTCATTTTATATAACTTCTGAAAGGTATCCACATCCTTTATTTTTAATGAACATGAGATAAAAATGTCTCTTTCACCAGCTGGTTCTGTTCTTTCGTTCTTTAGTATTCTACCTACGTAGTTCTTGCTATGTATTTATCGACTGCAATGTTGTTTGCATTCATGACTTTTTTCCTCTAAAATGCAGCAAGTTCTGGGTAACATGACTCTGCCTCATTCCATTGGGAAGGTAAGCATGTGAATTCTGTTTGAATGAGCATGTCACATTGGAACTCAATATATAATTAATTTGTTGAAAAAATATATATTACCTTTCAGACTGTCAAAGTGGCTTTCTTTGCTGAAGGGGCTGACGCTGAGGAAGCAAGGGCTGCTGGAGCTGATATTGTAGGTGGCCTTGAACTAATAGAGCAAATTGCAAGTAAGAACTGAACTGACCCTATTGGTTTCCTTTTTATTATTAGGGAAAATTTTATTTCATTCTTGTACTTGAACCTATTCAATGAATCAATTTTTCCCTTAAAATTTCAAGTTGTTCAAATTAAATTTAATCCTAATGTTATGAGAGGTGGAATTAGCCCTTTTAAGGTCTCTCTATATTGTCTAGGATTGTCATGAAAAAATAACAGCTTAAGAAGTTTTGTGGAAGTGCACCTAAGTATCGGTTCTTCTTCTTGGATAAACCTTCTCATAATATAGTTCAAATGGGCCCAACGAACATGATCAAAAGCTTTGCAAAATCAAGTTGGTTGTGTTAGTTAGATGAACTTGAATTTCGAACTAATAATTGTTTGGGACTTCATTTCTTTAACTTTATATATGCAGGCAGTCGGAAATTCAATGCTGATAAGTGTTTCTCTACCCCTGAAATGATGAGGCGCATTGGCAAGGTTTATGGAAATTAACTTTTTGTGCATTGTATTGTTCTATGCTGATGGCTGTGTATTCAAGAAGAATATTTTTATAAAACATTTACTCGAAGTTTGATGTTATTGGTGTTTAGATTTCCAAGATTTTGAGACAGCGTGGATTGCTACCAGATCCTAAAGTGAGCACACAATCCTCTGTTTCTTTGGTGTTCCATTGCTTATAGATTGAAATCAAATCAGATGTGCTGACATATTGTATAGCTAGGTACTGTGACCAGTGATATCAAAGGGGCCTTAAAGAAAGCAAGAGAAGGACACATGCATTTTAAAATGGATTCCACATCTATTGTGCATGTGGGGCTTGGGAAGGTAAAATAACTTTAGTTTGAAGCATATAGCTTACTTTCATAAGGAATGCAGATGCTGAAGCAGTTTCAGAAAGTACCCATCTAATTAGCACAAACTGTTTCTTGCAGGTGAGTCATTCGGAAGAGTTCTTACGAGAAAATATTGGTGCATTTGTGAATGCTCTTTTGCTTGCAAAGCCTGTTGGCTTGAAAAAAGGCAAGTTGTACTCTTTTTTCCCCCCATGATACAAATTCATTCAACATTGAACTTCAGTGCTTTTACTACTTTTACGAAAAATGTTCCTATCAACGGACTGACTCTTCTGCCGATAATCATAGCATTTTCTTTGGTTTCTCTGACTGAAATTATATGTACTTGCAGCCTCAAAATATGCTGGATATTTAAATTCCTTCCACATATGTAGCACGGTAATTCTCTCAACTATTGTTATGGCCATTGCAACACTGAATTTCTTAGGAGCATAGTGATACATTGTTGAGTTCAACACTAAAATTATTGTGTGAAAATCTCTCAAGGATCTACTAGGATCATGCAATAGTAATCATGCATGAGTTTCTAACTCCAAACTTGATGAACATGGATCATGGAGGTCCTTGGGACAAATATTGTGATTTCATAAACGGGCTTTCTTTCATTGCAACTTTAAGATCTTATTTTGATGTTAAGTCTAGATATGTATTGCTATAGGCTGCAAGTTATCTGCCTCTTCCTTTTGTGAAATTCCTAAAACTGTTTAAAAAAGTATGTGTCTGTGCTATTTGGATGAATGAGTCACTCAGATGTATGAACATTTTGTGTCAGAATCTGTGAATGTCTTGGCATGAAAATAAGAAGTTCAACGACTCCAAAAATTCTCATAGTACTATTTTGCTATCAAGGATATTGAATAATTCATCTGTAGCATACATATTTAAAATAGTTAAGGGAATGTCGGCTGTTTTGACCAATGATAAATCTTATAAAATGTCTGAAAGGTTAGTAAAGGATATGAGACATGAGACAGTTTATGTTCTAAATATTGACCATAAGACCCCATTCTCTATTTGTCCATCCTTTATTTTTGTAGGTGATAGAATGCTAAGGAATATTATTCAGTATTGAGGGCATGTTAGTTATCAGCTAAGGAAGGGTTATGGTGATCATAAAATAGGGAGAGAATAGGAAATTGTTTAATATTCTAGGCTCTAGTATCATTCCACAAATGATAAAAAAGGAGGTTTCAAGTACCTTAAATACTTGGGAAAGTTTTGTTGTAATTCTGATCCTTATATTTCACTACGTTTGGAGTTCTATTGGTAGGCTATTTATAAGTTGATGCATGTCAGTTTTACTTCCAAATAATTTGTTTATAGTACATGTTCATAAACCGAAATGATGGTTGCACACTTCGCTGATACATATCTCCTCTTTGGGATCTTATATCCTCTTAGTTGCACCTACTGAATGTCTACTAAATGGTGAAATAACTCATTATTTTTGTAATTTGCAGATGGGTCCCGGATTCCCAATCACAATACAATCATTGTCCAAAGTTGCAGATCAATACAACAGAAAGTACTTAAGTGGTGTGGTCCGATGAAATCTAAAGTTGTAGGTTTTTTCGTAGCCATTTTTTCATCTTTGATCTCCCTTTTCCCCAATTATAATTCAATTGTTATAAAGCAGGAAGTAGTCTAGATTGGATTGGATTATGTTCAACTATTTATTGAGGACATTCCATCTTTTTTGTGTACTGAGGTAGAAACTGTTAGCTTTTACTGAATAGCAGCAGAGTCATTTTGATTTTGGCTTTGCTCTGTTTGTTGTATTTACTTGATCGATCTTCTGGGCTCTTGCAGTTTGTTTATCACTAAACACTAGCTGTGGTTTTTGTGGTCTTCAGTACTCCTTGTGACTTGTGAGACTCATAGCTGCTTGTGGAAAATAAAAGGCAAGCTTTCTTATAAAGATAAAGTCTGGATTTGTCAAACAGTTCGGATCTCTTCATTTTTCTTTCTCTATTAATTGAATCAGTGATTAGTTGTCTTTTCTGATCTTACAAATTGAGGTATGAATTACTTATTGGGAGAGTTGATGGTAATTTAAAAAGTAGGTTG ATGGCAGTTCTCAAGCTCATCCTCACTCATGCTCGCCGCCATTCCTTTGCCAGACCTCCTTCTCTTTCAACTTCTCACTTCCTTCACTTTCGAAGATCACTCTCTTCCTCTCAATCTGATTCTAACCCAGATCCCGATTCTCCCCCTGATCAATCCTCTCCAAGAACCTCTCGTTCCGTTCCCATTCAGCCAGTTTCCTACGCCGTCAAGCCCAAGCCACAAGCCGATGAGAATCAAGATTCCCCAGTAACGCTTCAATCTCCACCGCCTCCACAGGGGCCGCCGCCAAGGCCTGAAGGTCGGAGGACGTGGACTCGTGAGGATGTTCGATATATGAAGGATGCTCCAACTATAACTCCTGTTTCTTATGCGGCACGTGTTGCTCCGCTTCCGGAAGATACGGGTTCGGCTTCCGGTGGAGGAGAAGAGGGTGTGGTGACTGAGCAAATGGAGGAGGAAAGGAAGAAAATTGAGGCGGCGAATCAATGGAGGAGGAGGGTTTTGAGGGTTGCGGAGGAGGAGAAAGTTACTGCTCCATTTCCGATGCTGATCAAAGTCGAGAAGAAGGAACAGAAGGTAGTTCTTGATTTGATAGACGCTATCCGGCAAGTGAAGGCTGCTGCCAAGGGAAATTTTGATGAGACTGTTGAAGCACATGCAAGGTTGGGGGTTGATGCTAGGAAAATGCAAGTTCTGGGTAACATGACTCTGCCTCATTCCATTGGGAAGACTGTCAAAGTGGCTTTCTTTGCTGAAGGGGCTGACGCTGAGGAAGCAAGGGCTGCTGGAGCTGATATTGTAGGTGGCCTTGAACTAATAGAGCAAATTGCAAGCAGTCGGAAATTCAATGCTGATAAGTGTTTCTCTACCCCTGAAATGATGAGGCGCATTGGCAAGGTTTATGGAAATTAA MAVLKLILTHARRHSFARPPSLSTSHFLHFRRSLSSSQSDSNPDPDSPPDQSSPRTSRSVPIQPVSYAVKPKPQADENQDSPVTLQSPPPPQGPPPRPEGRRTWTREDVRYMKDAPTITPVSYAARVAPLPEDTGSASGGGEEGVVTEQMEEERKKIEAANQWRRRVLRVAEEEKVTAPFPMLIKVEKKEQKVVLDLIDAIRQVKAAAKGNFDETVEAHARLGVDARKMQVLGNMTLPHSIGKTVKVAFFAEGADAEEARAAGADIVGGLELIEQIASSRKFNADKCFSTPEMMRRIGKVYGN Homology
BLAST of Cucsat.G16621.T2 vs. ExPASy Swiss-Prot
Match: A3PGI6 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) OX=349101 GN=rplA1 PE=3 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 1.3e-19 Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 0
BLAST of Cucsat.G16621.T2 vs. ExPASy Swiss-Prot
Match: Q3J5T3 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.) OX=272943 GN=rplA PE=3 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 1.3e-19 Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 0
BLAST of Cucsat.G16621.T2 vs. ExPASy Swiss-Prot
Match: A4WVL9 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) OX=349102 GN=rplA PE=3 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 1.3e-19 Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 0
BLAST of Cucsat.G16621.T2 vs. ExPASy Swiss-Prot
Match: B9KL80 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) OX=557760 GN=rplA PE=3 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 1.3e-19 Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 0
BLAST of Cucsat.G16621.T2 vs. ExPASy Swiss-Prot
Match: A6Q1M0 (50S ribosomal protein L1 OS=Nitratiruptor sp. (strain SB155-2) OX=387092 GN=rplA PE=3 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 8.4e-19 Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = 0
BLAST of Cucsat.G16621.T2 vs. NCBI nr
Match: XP_004152169.1 (uncharacterized protein LOC101207134 [Cucumis sativus] >KGN52948.1 hypothetical protein Csa_014531 [Cucumis sativus]) HSP 1 Score: 568 bits (1464), Expect = 1.02e-201 Identity = 299/300 (99.67%), Postives = 300/300 (100.00%), Query Frame = 0
BLAST of Cucsat.G16621.T2 vs. NCBI nr
Match: XP_016901449.1 (PREDICTED: 50S ribosomal protein L1 isoform X2 [Cucumis melo]) HSP 1 Score: 527 bits (1357), Expect = 1.89e-185 Identity = 281/302 (93.05%), Postives = 290/302 (96.03%), Query Frame = 0
BLAST of Cucsat.G16621.T2 vs. NCBI nr
Match: XP_008454163.1 (PREDICTED: 50S ribosomal protein L1 isoform X1 [Cucumis melo] >XP_008454164.1 PREDICTED: 50S ribosomal protein L1 isoform X1 [Cucumis melo]) HSP 1 Score: 527 bits (1357), Expect = 1.96e-185 Identity = 281/302 (93.05%), Postives = 290/302 (96.03%), Query Frame = 0
BLAST of Cucsat.G16621.T2 vs. NCBI nr
Match: KAA0044489.1 (50S ribosomal protein L1 isoform X1 [Cucumis melo var. makuwa] >TYK29616.1 50S ribosomal protein L1 isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 527 bits (1357), Expect = 2.18e-185 Identity = 281/302 (93.05%), Postives = 290/302 (96.03%), Query Frame = 0
BLAST of Cucsat.G16621.T2 vs. NCBI nr
Match: XP_038877977.1 (50S ribosomal protein L1 [Benincasa hispida] >XP_038877978.1 50S ribosomal protein L1 [Benincasa hispida]) HSP 1 Score: 465 bits (1197), Expect = 4.04e-161 Identity = 250/300 (83.33%), Postives = 267/300 (89.00%), Query Frame = 0
BLAST of Cucsat.G16621.T2 vs. ExPASy TrEMBL
Match: A0A0A0KTS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G007040 PE=4 SV=1) HSP 1 Score: 568 bits (1464), Expect = 4.94e-202 Identity = 299/300 (99.67%), Postives = 300/300 (100.00%), Query Frame = 0
BLAST of Cucsat.G16621.T2 vs. ExPASy TrEMBL
Match: A0A1S4DZR3 (50S ribosomal protein L1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494649 PE=4 SV=1) HSP 1 Score: 527 bits (1357), Expect = 9.16e-186 Identity = 281/302 (93.05%), Postives = 290/302 (96.03%), Query Frame = 0
BLAST of Cucsat.G16621.T2 vs. ExPASy TrEMBL
Match: A0A1S3BZ70 (50S ribosomal protein L1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494649 PE=4 SV=1) HSP 1 Score: 527 bits (1357), Expect = 9.50e-186 Identity = 281/302 (93.05%), Postives = 290/302 (96.03%), Query Frame = 0
BLAST of Cucsat.G16621.T2 vs. ExPASy TrEMBL
Match: A0A5D3E127 (50S ribosomal protein L1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002270 PE=4 SV=1) HSP 1 Score: 527 bits (1357), Expect = 1.06e-185 Identity = 281/302 (93.05%), Postives = 290/302 (96.03%), Query Frame = 0
BLAST of Cucsat.G16621.T2 vs. ExPASy TrEMBL
Match: A0A6J1GVQ7 (uncharacterized protein LOC111457596 OS=Cucurbita moschata OX=3662 GN=LOC111457596 PE=4 SV=1) HSP 1 Score: 459 bits (1180), Expect = 7.48e-159 Identity = 242/300 (80.67%), Postives = 267/300 (89.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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