Cucsat.G16557.T13 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G16557.T13
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionProtein CMSS1
Locationctg24: 629773 .. 632826 (+)
RNA-Seq ExpressionCucsat.G16557.T13
SyntenyCucsat.G16557.T13
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAAAAATGGTGGGTTTAGAAAATGCAGACAAGTCTTCTCTTCGAAACCCTAGAAATAAACGTAAACAGCGGCCTCCTAATAAGCCTAGGAACGCCAAGAAGAGAAAGCCCGATGTGAACCACAATCGCCATGCTCAAGAGACCACAAATGGTAGTGAAGCCATTGCATCAGAGCCACTTCCATTGGAGCCCTTCAGCTTTTTCCTGAATGAGTTCCAAACGGCTAATGATGTGCAGGTTTCTTCTCTTGAGTTGGATTCCATGAAAGGTGCTTTACTAATCTGTGTCATATTCTTATTCTTTTTCCATGGAATATAATGTAATATGTTTTGTAGTGTTTAATTGTATTCGGCATCCATTTTTTCTTTTCTGAATGCGTGAGAATTTATCTGGTTTTTGTTATGATTGAAATTTTTTGTAGATAGATGCATTCTGGGTCCTCCTGAAAGTTCAGTTCAGGATGATAAAAGTTTGGTGAAACATGTTAAGGAAGCTTTTGGATCGTCGTGGAAAGAAATTCTATGTAAGGGGGAACTCTTGGAAGGACGGACTGAACCTGGGAGTCCTGCAGTTCTTATAATCAGTACATCTGCACTTAGGTCGATTGAACTTTTAAAGTAAGATGGATAATTTTTTTCTGCTAGTATGTTTTTGAAATAAGTGCGTGCTTTTGTGTAACTCATTTATATTTATTAGGGGTTTTCGATCGATAACTCAAGAATGCCATGCTGTAAAGCTATTTTCGAAGCACATGAAGGTTGAGGAACAGGTAGGTGGAAGTTTCTTTCCATGATATTTTCTCTTTTAGATGATTCTGAGATAGGGGTAACATATGTTTTTGTTGTTTGATGATGTTTCAAGTTGTATGGTTTACCAATTCTTTCAATTGAATGCTTGTTGTATATCAACGCTAAACAGAGTGTGGATGATAATTGTTTATATTTTGCTATCTGGAACAAGTGGGAAGAGTTCTTGATATGTTTTAAGAGGCCTGAAGTAGTCATTCTTTTCTTTATGTTGAAAACCTCGTAGTTTCAAAATTTTGTTTGGGAGATGAAGATAATTCAAAAAACCATCTGAGGCAAAAACACTGCTGAATTTAATGGTTTGCACGTCAGTCTGATCCTGTATTTTCATTACCTTTGCTTTTAATTTTCCTGATTTCTGAAACTGATCTTATCTTATCTTTGTGATTCATTCCAGTTTTGATCTTCATGGTCACATGATTAATTTTGTGAAAAGTGTTTGTTATACACTGCTTCTCTTCATGAGCTTGGAAAGCTCAAGCAGTGATTTAGCTTCTTGATTCTTCAACACATAACAAGTAACATTATTCAGCATTAGCAATTGGTGATTTTTATGGCTCTATTCTTTTTTTGGTAACTGGGTGTCTTGGCCAATTAGTGGTTTCCATGTGCATCCATGCAACTGCTTTTCTTTATTTTGTTTGGGAAGTGATGACAAACTAGAAAAGTTTCTCAGATGCAGTTGCTATGCCGAACTTTTTATTTGCACGTCAGTCTGATCCCGTTTTCTCAATAACATGGTTGTCATTTCTGAGCTTATGAATGCTAGACTTGAATTTTTCTTGTTATTTTTAATGGTTTTTTAAAAAACAAGGATAGAGAATTGGCATTTTTGCATTCCCCGTTGACCTCTTCAAACAATCATTAACATCCTTAACTTTTCCTTTAAATTTTTTGCGTTCCCTCTTCTTTTTGTTTTCTTACATCCATTTTGGACACAGATCTCTTATTTTTATGTGAAATCTTCAACTGAACTCCCAATATTATTTTCAGTTGCCTATGGTGATCACAATTATGTTATCTTATTTTTAAAGTATGGGAAATGAAGACAATTTGAAAATTTCATCAGAGGTAGATACTATGCTGAACTCTATTGCACGTCAGTCTGATCCCTATAATTGTTTATTGGGTGTAATCTATGCAATTACCACATAAAGTATGTTTTTGGTCCAAGATGAAAGGGGGGATGAGGCAATTCCAGGTTTTGTTATTCTGTTGTGATTTAGATAATTCCGTCTAGTTCACATTTCTGCTGAATTCGTTCAAGATCCTTTTGAATTGTGCAAAATTGTTTCAAATGACATCTAATTTCAATTGTGTCTCTAACCATCTGTGTAATGCAACATTACTTGGTGGTTTTTCTTAAAACATCCAGTTGTCGGTTTTGGTTTTCATATCTCTTGAACTGTTATTGTTATTCCCTTTATGATGGGTGCAGGTACAGCTGTTGAAGAACCGTGTTAACATTGCGAGTGGTACACCGAGCAGGTTAGGCTTTTTTTGTATTGGGTTTATCGTTCAGGAATTCTAGTTCCAGATTTTGTTTCTAATGGAGTACTGTTGAGCATCTATATTGATTATCTACATTCTTCCGGGATCTATCTCTTCTCATATACATACTCTTCTGTGTCTATTTTAGGATTAAAAAATTGATTGACATTGAGGCGTTGGGGCTGTCAAGACTAGCCGTCATTGTGCTGGACGTTCAACCAGATGTCAAGGGATATTCTTTATTTTCACTTCCACAAGTCAGGTTTGAAAACCTCCTTTATATAACTTGTCTCAACTTCCTCGATCTATGTTCAAATTAGAAGAGAATGTTTTTATATAAATAGCTGCTCATAAAATTCATATTGCAGAGATGAATTCTGGGATTTATACAAGAGCTACTTACACCCGCGGATAGTTGAGGGTGAGCTGCGAATTTGCCTCTTTGGACCTTTACAACCTACTCGTAAACGAAGAAAAAAGGAAATCTAGTTATTGTTAATGCATCCTCAAAGTTCATCAGTTCCCACAAATTATCTTTCATCACTTGATCATTTTTCCCCAACTTCCGTTTCATTCCTATAATTCCGATTTGGTTTGTTGTACCAAAATTTTGCAATCTGAGCTGAGTCAATTTTGAAGTCAAGCTGTGTGAAATATTACATTGTGTAATAGATTTTGGAATTATGTATAAATTATTCACTTTTTCTAATTTACTAATTTAACATAAATACCTCGTTTTATATGTATAATTTCTGT

Coding sequence (CDS)

GAAAAAATGGTGGGTTTAGAAAATGCAGACAAGTCTTCTCTTCGAAACCCTAGAAATAAACGTAAACAGCGGCCTCCTAATAAGCCTAGGAACGCCAAGAAGAGAAAGCCCGATGTGAACCACAATCGCCATGCTCAAGAGACCACAAATGGTAGTGAAGCCATTGCATCAGAGCCACTTCCATTGGAGCCCTTCAGCTTTTTCCTGAATGAGTTCCAAACGGCTAATGATGTGCAGGTTTCTTCTCTTGAGTTGGATTCCATGAAAGATAGATGCATTCTGGGTCCTCCTGAAAGTTCAGTTCAGGATGATAAAAGTTTGGTGAAACATGTTAAGGAAGCTTTTGGATCGTCGTGGAAAGAAATTCTATGTAAGGGGGAACTCTTGGAAGGACGGACTGAACCTGGGAGTCCTGCAGTTCTTATAATCAGTACATCTGCACTTAGGTCGATTGAACTTTTAAAGGGTTTTCGATCGATAACTCAAGAATGCCATGCTGTAAAGCTATTTTCGAAGCACATGAAGGTTGAGGAACAGTTGCCTATGGTGATCACAATTATGTTATCTTATTTTTAA

Protein sequence

EKMVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPLEPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEILCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQLPMVITIMLSYF
Homology
[Close]
BLAST of Cucsat.G16557.T13 vs. ExPASy Swiss-Prot
Match: Q5XJK9 (Protein CMSS1 OS=Danio rerio OX=7955 GN=cmss1 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-04
Identity = 44/161 (27.33%), Postives = 76/161 (47.20%), Query Frame = 0 

Query: 22  KQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPLEPFSFFLNEFQTANDVQVS 81
           ++R   KP N   +    N  R  ++ T      +S+P+P  P               VS
Sbjct: 66  QERSEEKPDNESNK----NKKRRKKKKTITDVLTSSKPVPGSPVDL------------VS 125

Query: 82  SLELDSMKDRCILGPPESSVQDDKSL-VKHVKEAFGSSWKEILCK-GELLEGRTEPGSPA 141
            L+    + R ++   E ++QD   L    +  +  S  KE+  K  ++ +  T+  S  
Sbjct: 126 LLKTYHSQTRSVIEQEELTLQDSCFLSCNDLTHSLSSYLKEVCPKWAKMQKQHTQTSSVV 185

Query: 142 VLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQL 181
           +LI+  SALR+I+L+K   +   +   +KLF+KH+KVEEQ+
Sbjct: 186 LLIVCGSALRTIDLIKQLVTFKGQAKVLKLFAKHIKVEEQI 210

[Close]
BLAST of Cucsat.G16557.T13 vs. NCBI nr
Match: XP_004152079.1 (protein CMSS1 [Cucumis sativus] >KGN53128.1 hypothetical protein Csa_014754 [Cucumis sativus])

HSP 1 Score: 346 bits (887), Expect = 3.38e-118
Identity = 177/180 (98.33%), Postives = 179/180 (99.44%), Query Frame = 0 

Query: 3   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 62
           MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL
Sbjct: 1   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 60

Query: 63  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 122
           EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 120

Query: 123 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQLPM 182
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQ+ +
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQVQL 180

[Close]
BLAST of Cucsat.G16557.T13 vs. NCBI nr
Match: KAA0044636.1 (protein CMSS1 [Cucumis melo var. makuwa])

HSP 1 Score: 335 bits (858), Expect = 8.77e-114
Identity = 169/180 (93.89%), Postives = 175/180 (97.22%), Query Frame = 0 

Query: 3   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 62
           MVGLENAD +SLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQ  TNGSE IASEPLPL
Sbjct: 1   MVGLENADNASLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQNATNGSEIIASEPLPL 60

Query: 63  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 122
           EPFSFFLNEFQTANDVQVSSLEL+SMKDRCILGPPESSVQDDKSLVKH+KEAFGSSWKE+
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELESMKDRCILGPPESSVQDDKSLVKHIKEAFGSSWKEV 120

Query: 123 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQLPM 182
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQ+ +
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQVQL 180

[Close]
BLAST of Cucsat.G16557.T13 vs. NCBI nr
Match: XP_008453922.1 (PREDICTED: protein CMSS1 [Cucumis melo])

HSP 1 Score: 330 bits (846), Expect = 5.88e-112
Identity = 167/180 (92.78%), Postives = 173/180 (96.11%), Query Frame = 0 

Query: 3   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 62
           MVGLENAD +SLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQ  TN SE IASEPLPL
Sbjct: 1   MVGLENADNASLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQNATNSSEIIASEPLPL 60

Query: 63  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 122
           EPFSFFLNEFQTANDVQVSSLEL+SMKDRCILGPPESSVQDDKSLVKH+KEA GSSWKE+
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELESMKDRCILGPPESSVQDDKSLVKHIKEALGSSWKEV 120

Query: 123 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQLPM 182
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQ+ +
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQVQL 180

[Close]
BLAST of Cucsat.G16557.T13 vs. NCBI nr
Match: TYK16952.1 (protein CMSS1 [Cucumis melo var. makuwa])

HSP 1 Score: 330 bits (846), Expect = 5.88e-112
Identity = 167/180 (92.78%), Postives = 173/180 (96.11%), Query Frame = 0 

Query: 3   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 62
           MVGLENAD +SLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQ  TN SE IASEPLPL
Sbjct: 1   MVGLENADNASLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQNATNSSEIIASEPLPL 60

Query: 63  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 122
           EPFSFFLNEFQTANDVQVSSLEL+SMKDRCILGPPESSVQDDKSLVKH+KEA GSSWKE+
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELESMKDRCILGPPESSVQDDKSLVKHIKEALGSSWKEV 120

Query: 123 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQLPM 182
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQ+ +
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQVQL 180

[Close]
BLAST of Cucsat.G16557.T13 vs. NCBI nr
Match: XP_038906109.1 (protein CMS1 isoform X3 [Benincasa hispida])

HSP 1 Score: 293 bits (749), Expect = 6.28e-97
Identity = 149/183 (81.42%), Postives = 166/183 (90.71%), Query Frame = 0 

Query: 3   MVGLENADKSS---LRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEP 62
           MVGLENADK+S   LRNPR KRKQRPPN P+N+KKRK  VN+NR AQ   NGSE  ASE 
Sbjct: 1   MVGLENADKASEASLRNPRKKRKQRPPNNPKNSKKRKSVVNNNRDAQNANNGSENSASEA 60

Query: 63  LPLEPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSW 122
           LPLEPFSFFL+EFQTANDVQ+SSLE +SMKDRCILGPPESSVQDDK+LVKH+KEAFGSSW
Sbjct: 61  LPLEPFSFFLDEFQTANDVQISSLEFESMKDRCILGPPESSVQDDKTLVKHIKEAFGSSW 120

Query: 123 KEILCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQ 182
           KE+LCKG+L EG+TEPGSPAVLIISTSALRSIELLKGFRS+T+ECHAVKLFSKHMK+EEQ
Sbjct: 121 KEVLCKGKLFEGKTEPGSPAVLIISTSALRSIELLKGFRSLTEECHAVKLFSKHMKIEEQ 180

[Close]
BLAST of Cucsat.G16557.T13 vs. ExPASy TrEMBL
Match: A0A0A0KUA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017160 PE=4 SV=1)

HSP 1 Score: 346 bits (887), Expect = 1.64e-118
Identity = 177/180 (98.33%), Postives = 179/180 (99.44%), Query Frame = 0 

Query: 3   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 62
           MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL
Sbjct: 1   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 60

Query: 63  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 122
           EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 120

Query: 123 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQLPM 182
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQ+ +
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQVQL 180

[Close]
BLAST of Cucsat.G16557.T13 vs. ExPASy TrEMBL
Match: A0A5A7TR86 (Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003890 PE=4 SV=1)

HSP 1 Score: 335 bits (858), Expect = 4.24e-114
Identity = 169/180 (93.89%), Postives = 175/180 (97.22%), Query Frame = 0 

Query: 3   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 62
           MVGLENAD +SLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQ  TNGSE IASEPLPL
Sbjct: 1   MVGLENADNASLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQNATNGSEIIASEPLPL 60

Query: 63  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 122
           EPFSFFLNEFQTANDVQVSSLEL+SMKDRCILGPPESSVQDDKSLVKH+KEAFGSSWKE+
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELESMKDRCILGPPESSVQDDKSLVKHIKEAFGSSWKEV 120

Query: 123 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQLPM 182
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQ+ +
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQVQL 180

[Close]
BLAST of Cucsat.G16557.T13 vs. ExPASy TrEMBL
Match: A0A5D3CZG6 (Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00910 PE=4 SV=1)

HSP 1 Score: 330 bits (846), Expect = 2.85e-112
Identity = 167/180 (92.78%), Postives = 173/180 (96.11%), Query Frame = 0 

Query: 3   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 62
           MVGLENAD +SLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQ  TN SE IASEPLPL
Sbjct: 1   MVGLENADNASLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQNATNSSEIIASEPLPL 60

Query: 63  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 122
           EPFSFFLNEFQTANDVQVSSLEL+SMKDRCILGPPESSVQDDKSLVKH+KEA GSSWKE+
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELESMKDRCILGPPESSVQDDKSLVKHIKEALGSSWKEV 120

Query: 123 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQLPM 182
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQ+ +
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQVQL 180

[Close]
BLAST of Cucsat.G16557.T13 vs. ExPASy TrEMBL
Match: A0A1S3BYM0 (protein CMSS1 OS=Cucumis melo OX=3656 GN=LOC103494501 PE=4 SV=1)

HSP 1 Score: 330 bits (846), Expect = 2.85e-112
Identity = 167/180 (92.78%), Postives = 173/180 (96.11%), Query Frame = 0 

Query: 3   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 62
           MVGLENAD +SLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQ  TN SE IASEPLPL
Sbjct: 1   MVGLENADNASLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQNATNSSEIIASEPLPL 60

Query: 63  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 122
           EPFSFFLNEFQTANDVQVSSLEL+SMKDRCILGPPESSVQDDKSLVKH+KEA GSSWKE+
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELESMKDRCILGPPESSVQDDKSLVKHIKEALGSSWKEV 120

Query: 123 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQLPM 182
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQ+ +
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQVQL 180

[Close]
BLAST of Cucsat.G16557.T13 vs. ExPASy TrEMBL
Match: A0A6J1GWA7 (protein CMS1 OS=Cucurbita moschata OX=3662 GN=LOC111458074 PE=4 SV=1)

HSP 1 Score: 268 bits (685), Expect = 1.27e-87
Identity = 141/187 (75.40%), Postives = 160/187 (85.56%), Query Frame = 0 

Query: 3   MVGLENADKSS---LRNPRNKRKQRPPNK----PRNAKKRKPDVNHNRHAQETTNGSEAI 62
           M G  N+DK+S   LRNPR KRKQRP NK    P++AKKRK D   N  AQ  TNGSE+ 
Sbjct: 1   MGGFGNSDKASEASLRNPRKKRKQRPSNKLHTKPKSAKKRKSDPTLNTDAQNATNGSESS 60

Query: 63  ASEPLPLEPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAF 122
           A E LPLEPFSFFL+EFQTANDVQVSSLELDSMK RCILGPP+SS+QD+K+LVKH+KEAF
Sbjct: 61  ALEALPLEPFSFFLDEFQTANDVQVSSLELDSMKGRCILGPPQSSIQDEKTLVKHIKEAF 120

Query: 123 GSSWKEILCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMK 182
           GSSWKE+LCKG+LLEG T PGSPAVLIISTSA+R+IELLKGFRS+TQECHAVKLFSKHMK
Sbjct: 121 GSSWKEVLCKGKLLEGETAPGSPAVLIISTSAIRAIELLKGFRSLTQECHAVKLFSKHMK 180

The following BLAST results are available for this feature:
BLAST of Cucsat.G16557.T13 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q5XJK91.6e-0427.33Protein CMSS1 OS=Danio rerio OX=7955 GN=cmss1 PE=2 SV=1[more]
BLAST of Cucsat.G16557.T13 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152079.13.38e-11898.33protein CMSS1 [Cucumis sativus] >KGN53128.1 hypothetical protein Csa_014754 [Cuc... [more]
KAA0044636.18.77e-11493.89protein CMSS1 [Cucumis melo var. makuwa][more]
XP_008453922.15.88e-11292.78PREDICTED: protein CMSS1 [Cucumis melo][more]
TYK16952.15.88e-11292.78protein CMSS1 [Cucumis melo var. makuwa][more]
XP_038906109.16.28e-9781.42protein CMS1 isoform X3 [Benincasa hispida][more]
BLAST of Cucsat.G16557.T13 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUA91.64e-11898.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017160 PE=4 SV=1[more]
A0A5A7TR864.24e-11493.89Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003890 ... [more]
A0A5D3CZG62.85e-11292.78Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00910 ... [more]
A0A1S3BYM02.85e-11292.78protein CMSS1 OS=Cucumis melo OX=3656 GN=LOC103494501 PE=4 SV=1[more]
A0A6J1GWA71.27e-8775.40protein CMS1 OS=Cucurbita moschata OX=3662 GN=LOC111458074 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032704Protein Cms1PFAMPF14617CMS1coord: 20..181
e-value: 1.3E-10
score: 41.0
IPR032704Protein Cms1PANTHERPTHR24030PROTEIN CMSS1coord: 16..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G16557Cucsat.G16557gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G16557.T13.E1Cucsat.G16557.T13.E1exon
Cucsat.G16557.T13.E2Cucsat.G16557.T13.E2exon
Cucsat.G16557.T13.E3Cucsat.G16557.T13.E3exon
Cucsat.G16557.T13.E4Cucsat.G16557.T13.E4exon
Cucsat.G16557.T13.E5Cucsat.G16557.T13.E5exon
Cucsat.G16557.T13.E6Cucsat.G16557.T13.E6exon
Cucsat.G16557.T13.E7Cucsat.G16557.T13.E7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G16557.T13.C1Cucsat.G16557.T13.C1CDS
Cucsat.G16557.T13.C2Cucsat.G16557.T13.C2CDS
Cucsat.G16557.T13.C3Cucsat.G16557.T13.C3CDS
Cucsat.G16557.T13.C4Cucsat.G16557.T13.C4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G16557.T13Cucsat.G16557.T13-proteinpolypeptide