Cucsat.G16557 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G16557
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Protein CMSS1
Location	ctg24: 629742 .. 632978 (+)
RNA-Seq Expression	Cucsat.G16557
Synteny	Cucsat.G16557

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGGCGTTCACTTCGTCCTCTTAAACCCTAGAAAAAATGGTGGGTTTAGAAAATGCAGACAAGTCTTCTCTTCGAAACCCTAGAAATAAACGTAAACAGCGGCCTCCTAATAAGCCTAGGAACGCCAAGAAGAGAAAGCCCGATGTGAACCACAATCGCCATGCTCAAGAGACCACAAATGGTAGTGAAGCCATTGCATCAGAGCCACTTCCATTGGAGCCCTTCAGCTTTTTCCTGAATGAGTTCCAAACGGCTAATGATGTGCAGGTTTCTTCTCTTGAGTTGGATTCCATGAAAGGTGCTTTACTAATCTGTGTCATATTCTTATTCTTTTTCCATGGAATATAATGTAATATGTTTTGTAGTGTTTAATTGTATTCGGCATCCATTTTTTCTTTTCTGAATGCGTGAGAATTTATCTGGTTTTTGTTATGATTGAAATTTTTTGTAGATAGATGCATTCTGGGTCCTCCTGAAAGTTCAGTTCAGGATGATAAAAGTTTGGTGAAACATGTTAAGGAAGCTTTTGGATCGTCGTGGAAAGAAATTCTATGTAAGGGGGAACTCTTGGAAGGACGGACTGAACCTGGGAGTCCTGCAGTTCTTATAATCAGTACATCTGCACTTAGGTCGATTGAACTTTTAAAGTAAGATGGATAATTTTTTTCTGCTAGTATGTTTTTGAAATAAGTGCGTGCTTTTGTGTAACTCATTTATATTTATTAGGGGTTTTCGATCGATAACTCAAGAATGCCATGCTGTAAAGCTATTTTCGAAGCACATGAAGGTTGAGGAACAGGTAGGTGGAAGTTTCTTTCCATGATATTTTCTCTTTTAGATGATTCTGAGATAGGGGTAACATATGTTTTTGTTGTTTGATGATGTTTCAAGTTGTATGGTTTACCAATTCTTTCAATTGAATGCTTGTTGTATATCAACGCTAAACAGAGTGTGGATGATAATTGTTTATATTTTGCTATCTGGAACAAGTGGGAAGAGTTCTTGATATGTTTTAAGAGGCCTGAAGTAGTCATTCTTTTCTTTATGTTGAAAACCTCGTAGTTTCAAAATTTTGTTTGGGAGATGAAGATAATTCAAAAAACCATCTGAGGCAAAAACACTGCTGAATTTAATGGTTTGCACGTCAGTCTGATCCTGTATTTTCATTACCTTTGCTTTTAATTTTCCTGATTTCTGAAACTGATCTTATCTTATCTTTGTGATTCATTCCAGTTTTGATCTTCATGGTCACATGATTAATTTTGTGAAAAGTGTTTGTTATACACTGCTTCTCTTCATGAGCTTGGAAAGCTCAAGCAGTGATTTAGCTTCTTGATTCTTCAACACATAACAAGTAACATTATTCAGCATTAGCAATTGGTGATTTTTATGGCTCTATTCTTTTTTTGGTAACTGGGTGTCTTGGCCAATTAGTGGTTTCCATGTGCATCCATGCAACTGCTTTTCTTTATTTTGTTTGGGAAGTGATGACAAACTAGAAAAGTTTCTCAGATGCAGTTGCTATGCCGAACTTTTTATTTGCACGTCAGTCTGATCCCGTTTTCTCAATAACATGGTTGTCATTTCTGAGCTTATGAATGCTAGACTTGAATTTTTCTTGTTATTTTTAATGGTTTTTTAAAAAACAAGGATAGAGAATTGGCATTTTTGCATTCCCCGTTGACCTCTTCAAACAATCATTAACATCCTTAACTTTTCCTTTAAATTTTTTGCGTTCCCTCTTCTTTTTGTTTTCTTACATCCATTTTGGACACAGATCTCTTATTTTTATGTGAAATCTTCAACTGAACTCCCAATATTATTTTCAGTTGCCTATGGTGATCACAATTATGTTATCTTATTTTTAAAGTATGGGAAATGAAGACAATTTGAAAATTTCATCAGAGGTAGATACTATGCTGAACTCTATTGCACGTCAGTCTGATCCCTATAATTGTTTATTGGGTGTAATCTATGCAATTACCACATAAAGTATGTTTTTGGTCCAAGATGAAAGGGGGGATGAGGCAATTCCAGGTTTTGTTATTCTGTTGTGATTTAGATAATTCCGTCTAGTTCACATTTCTGCTGAATTCGTTCAAGATCCTTTTGAATTGTGCAAAATTGTTTCAAATGACATCTAATTTCAATTGTGTCTCTAACCATCTGTGTAATGCAACATTACTTGGTGGTTTTTCTTAAAACATCCAGTTGTCGGTTTTGGTTTTCATATCTCTTGAACTGTTATTGTTATTCCCTTTATGATGGGTGCAGGTACAGCTGTTGAAGAACCGTGTTAACATTGCGAGTGGTACACCGAGCAGGTTAGGCTTTTTTTGTATTGGGTTTATCGTTCAGGAATTCTAGTTCCAGATTTTGTTTCTAATGGAGTACTGTTGAGCATCTATATTGATTATCTACATTCTTCCGGGATCTATCTCTTCTCATATACATACTCTTCTGTGTCTATTTTAGGATTAAAAAATTGATTGACATTGAGGCGTTGGGGCTGTCAAGACTAGCCGTCATTGTGCTGGACGTTCAACCAGATGTCAAGGGATATTCTTTATTTTCACTTCCACAAGTCAGGTTTGAAAACCTCCTTTATATAACTTGTCTCAACTTCCTCGATCTATGTTCAAATTAGAAGAGAATGTTTTTATATAAATAGCTGCTCATAAAATTCATATTGCAGAGATGAATTCTGGGATTTATACAAGAGCTACTTACACCCGCGGATAGTTGAGGGTGAGCTGCGAATTTGCCTCTTTGGACCTTTACAACCTACTCGTAAACGAAGAAAAAAGGAAATCTAGTTATTGTTAATGCATCCTCAAAGTTCATCAGTTCCCACAAATTATCTTTCATCACTTGATCATTTTTCCCCAACTTCCGTTTCATTCCTATAATTCCGATTTGGTTTGTTGTACCAAAATTTTGCAATCTGAGCTGAGTCAATTTTGAAGTCAAGCTGTGTGAAATATTACATTGTGTAATAGATTTTGGAATTATGTATAAATTATTCACTTTTTCTAATTTACTAATTTAACATAAATACCTCGTTTTATATGTATAATTTCTGTAGGAGTGGAGGCTGGAAATTAATTTTCAAAATATTAATAATCTAACACATTACGCATTGAATTTGAATTTAATATATAAGTACAATGTAGATTGGCAGTTTGTAGTCTATCAAGGATTTCATGCTTTGGAGATTATAGACGAATGACAGTGT

Coding sequence (CDS)

ATGGTGGGTTTAGAAAATGCAGACAAGTCTTCTCTTCGAAACCCTAGAAATAAACGTAAACAGCGGCCTCCTAATAAGCCTAGGAACGCCAAGAAGAGAAAGCCCGATGTGAACCACAATCGCCATGCTCAAGAGACCACAAATGGTAGTGAAGCCATTGCATCAGAGCCACTTCCATTGGAGCCCTTCAGCTTTTTCCTGAATGAGTTCCAAACGGCTAATGATGTGCAGGTTTCTTCTCTTGAGTTGGATTCCATGAAAGATAGATGCATTCTGGGTCCTCCTGAAAGTTCAGTTCAGGATGATAAAAGTTTGGTGAAACATGTTAAGGAAGCTTTTGGATCGTCGTGGAAAGAAATTCTATGTAAGGGGGAACTCTTGGAAGGACGGACTGAACCTGGGAGTCCTGCAGTTCTTATAATCAGTACATCTGCACTTAGGTCGATTGAACTTTTAAAGGGTTTTCGATCGATAACTCAAGAATGCCATGCTGTAAAGCTATTTTCGAAGCACATGAAGGTTGAGGAACAGGTAGGTGGAAGTTTCTTTCCATGA

Protein sequence

MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPLEPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEILCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQVGGSFFP

Homology

[Close]

BLAST of Cucsat.G16557 vs. ExPASy Swiss-Prot
Match: Q5XJK9 (Protein CMSS1 OS=Danio rerio OX=7955 GN=cmss1 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.1e-05
Identity = 44/161 (27.33%), Postives = 76/161 (47.20%), Query Frame = 0


Query: 20  KQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPLEPFSFFLNEFQTANDVQVS 79
           ++R   KP N   +    N  R  ++ T      +S+P+P  P               VS
Sbjct: 66  QERSEEKPDNESNK----NKKRRKKKKTITDVLTSSKPVPGSPVDL------------VS 125

Query: 80  SLELDSMKDRCILGPPESSVQDDKSL-VKHVKEAFGSSWKEILCK-GELLEGRTEPGSPA 139
            L+    + R ++   E ++QD   L    +  +  S  KE+  K  ++ +  T+  S  
Sbjct: 126 LLKTYHSQTRSVIEQEELTLQDSCFLSCNDLTHSLSSYLKEVCPKWAKMQKQHTQTSSVV 185

Query: 140 VLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 179
           +LI+  SALR+I+L+K   +   +   +KLF+KH+KVEEQ+
Sbjct: 186 LLIVCGSALRTIDLIKQLVTFKGQAKVLKLFAKHIKVEEQI 210

[Close]

BLAST of Cucsat.G16557 vs. NCBI nr
Match: XP_004152079.1 (protein CMSS1 [Cucumis sativus] >KGN53128.1 hypothetical protein Csa_014754 [Cucumis sativus])

HSP 1 Score: 348 bits (892), Expect = 4.41e-119
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 60
           MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL
Sbjct: 1   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 60

Query: 61  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 120
           EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 120

Query: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178

[Close]

BLAST of Cucsat.G16557 vs. NCBI nr
Match: KAA0044636.1 (protein CMSS1 [Cucumis melo var. makuwa])

HSP 1 Score: 337 bits (863), Expect = 1.15e-114
Identity = 170/178 (95.51%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 60
           MVGLENAD +SLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQ  TNGSE IASEPLPL
Sbjct: 1   MVGLENADNASLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQNATNGSEIIASEPLPL 60

Query: 61  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 120
           EPFSFFLNEFQTANDVQVSSLEL+SMKDRCILGPPESSVQDDKSLVKH+KEAFGSSWKE+
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELESMKDRCILGPPESSVQDDKSLVKHIKEAFGSSWKEV 120

Query: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178

[Close]

BLAST of Cucsat.G16557 vs. NCBI nr
Match: XP_008453922.1 (PREDICTED: protein CMSS1 [Cucumis melo])

HSP 1 Score: 332 bits (851), Expect = 7.68e-113
Identity = 168/178 (94.38%), Postives = 172/178 (96.63%), Query Frame = 0


Query: 1   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 60
           MVGLENAD +SLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQ  TN SE IASEPLPL
Sbjct: 1   MVGLENADNASLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQNATNSSEIIASEPLPL 60

Query: 61  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 120
           EPFSFFLNEFQTANDVQVSSLEL+SMKDRCILGPPESSVQDDKSLVKH+KEA GSSWKE+
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELESMKDRCILGPPESSVQDDKSLVKHIKEALGSSWKEV 120

Query: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178

[Close]

BLAST of Cucsat.G16557 vs. NCBI nr
Match: TYK16952.1 (protein CMSS1 [Cucumis melo var. makuwa])

HSP 1 Score: 332 bits (851), Expect = 7.68e-113
Identity = 168/178 (94.38%), Postives = 172/178 (96.63%), Query Frame = 0


Query: 1   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 60
           MVGLENAD +SLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQ  TN SE IASEPLPL
Sbjct: 1   MVGLENADNASLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQNATNSSEIIASEPLPL 60

Query: 61  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 120
           EPFSFFLNEFQTANDVQVSSLEL+SMKDRCILGPPESSVQDDKSLVKH+KEA GSSWKE+
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELESMKDRCILGPPESSVQDDKSLVKHIKEALGSSWKEV 120

Query: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178

[Close]

BLAST of Cucsat.G16557 vs. NCBI nr
Match: XP_038906109.1 (protein CMS1 isoform X3 [Benincasa hispida])

HSP 1 Score: 295 bits (754), Expect = 8.27e-98
Identity = 150/181 (82.87%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MVGLENADKSS---LRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEP 60
           MVGLENADK+S   LRNPR KRKQRPPN P+N+KKRK  VN+NR AQ   NGSE  ASE 
Sbjct: 1   MVGLENADKASEASLRNPRKKRKQRPPNNPKNSKKRKSVVNNNRDAQNANNGSENSASEA 60

Query: 61  LPLEPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSW 120
           LPLEPFSFFL+EFQTANDVQ+SSLE +SMKDRCILGPPESSVQDDK+LVKH+KEAFGSSW
Sbjct: 61  LPLEPFSFFLDEFQTANDVQISSLEFESMKDRCILGPPESSVQDDKTLVKHIKEAFGSSW 120

Query: 121 KEILCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQ 178
           KE+LCKG+L EG+TEPGSPAVLIISTSALRSIELLKGFRS+T+ECHAVKLFSKHMK+EEQ
Sbjct: 121 KEVLCKGKLFEGKTEPGSPAVLIISTSALRSIELLKGFRSLTEECHAVKLFSKHMKIEEQ 180

[Close]

BLAST of Cucsat.G16557 vs. ExPASy TrEMBL
Match: A0A0A0KUA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017160 PE=4 SV=1)

HSP 1 Score: 348 bits (892), Expect = 2.13e-119
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 60
           MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL
Sbjct: 1   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 60

Query: 61  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 120
           EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 120

Query: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178

[Close]

BLAST of Cucsat.G16557 vs. ExPASy TrEMBL
Match: A0A5A7TR86 (Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003890 PE=4 SV=1)

HSP 1 Score: 337 bits (863), Expect = 5.54e-115
Identity = 170/178 (95.51%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 60
           MVGLENAD +SLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQ  TNGSE IASEPLPL
Sbjct: 1   MVGLENADNASLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQNATNGSEIIASEPLPL 60

Query: 61  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 120
           EPFSFFLNEFQTANDVQVSSLEL+SMKDRCILGPPESSVQDDKSLVKH+KEAFGSSWKE+
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELESMKDRCILGPPESSVQDDKSLVKHIKEAFGSSWKEV 120

Query: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178

[Close]

BLAST of Cucsat.G16557 vs. ExPASy TrEMBL
Match: A0A5D3CZG6 (Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00910 PE=4 SV=1)

HSP 1 Score: 332 bits (851), Expect = 3.72e-113
Identity = 168/178 (94.38%), Postives = 172/178 (96.63%), Query Frame = 0


Query: 1   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 60
           MVGLENAD +SLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQ  TN SE IASEPLPL
Sbjct: 1   MVGLENADNASLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQNATNSSEIIASEPLPL 60

Query: 61  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 120
           EPFSFFLNEFQTANDVQVSSLEL+SMKDRCILGPPESSVQDDKSLVKH+KEA GSSWKE+
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELESMKDRCILGPPESSVQDDKSLVKHIKEALGSSWKEV 120

Query: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178

[Close]

BLAST of Cucsat.G16557 vs. ExPASy TrEMBL
Match: A0A1S3BYM0 (protein CMSS1 OS=Cucumis melo OX=3656 GN=LOC103494501 PE=4 SV=1)

HSP 1 Score: 332 bits (851), Expect = 3.72e-113
Identity = 168/178 (94.38%), Postives = 172/178 (96.63%), Query Frame = 0


Query: 1   MVGLENADKSSLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQETTNGSEAIASEPLPL 60
           MVGLENAD +SLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQ  TN SE IASEPLPL
Sbjct: 1   MVGLENADNASLRNPRNKRKQRPPNKPRNAKKRKPDVNHNRHAQNATNSSEIIASEPLPL 60

Query: 61  EPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 120
           EPFSFFLNEFQTANDVQVSSLEL+SMKDRCILGPPESSVQDDKSLVKH+KEA GSSWKE+
Sbjct: 61  EPFSFFLNEFQTANDVQVSSLELESMKDRCILGPPESSVQDDKSLVKHIKEALGSSWKEV 120

Query: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178
           LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV
Sbjct: 121 LCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMKVEEQV 178

[Close]

BLAST of Cucsat.G16557 vs. ExPASy TrEMBL
Match: A0A6J1GWA7 (protein CMS1 OS=Cucurbita moschata OX=3662 GN=LOC111458074 PE=4 SV=1)

HSP 1 Score: 270 bits (690), Expect = 1.68e-88
Identity = 142/185 (76.76%), Postives = 159/185 (85.95%), Query Frame = 0


Query: 1   MVGLENADKSS---LRNPRNKRKQRPPNK----PRNAKKRKPDVNHNRHAQETTNGSEAI 60
           M G  N+DK+S   LRNPR KRKQRP NK    P++AKKRK D   N  AQ  TNGSE+ 
Sbjct: 1   MGGFGNSDKASEASLRNPRKKRKQRPSNKLHTKPKSAKKRKSDPTLNTDAQNATNGSESS 60

Query: 61  ASEPLPLEPFSFFLNEFQTANDVQVSSLELDSMKDRCILGPPESSVQDDKSLVKHVKEAF 120
           A E LPLEPFSFFL+EFQTANDVQVSSLELDSMK RCILGPP+SS+QD+K+LVKH+KEAF
Sbjct: 61  ALEALPLEPFSFFLDEFQTANDVQVSSLELDSMKGRCILGPPQSSIQDEKTLVKHIKEAF 120

Query: 121 GSSWKEILCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSITQECHAVKLFSKHMK 178
           GSSWKE+LCKG+LLEG T PGSPAVLIISTSA+R+IELLKGFRS+TQECHAVKLFSKHMK
Sbjct: 121 GSSWKEVLCKGKLLEGETAPGSPAVLIISTSAIRAIELLKGFRSLTQECHAVKLFSKHMK 180

The following BLAST results are available for this feature:

BLAST of Cucsat.G16557 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XJK9	7.1e-05	27.33	Protein CMSS1 OS=Danio rerio OX=7955 GN=cmss1 PE=2 SV=1	[more]

BLAST of Cucsat.G16557 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152079.1	4.41e-119	100.00	protein CMSS1 [Cucumis sativus] >KGN53128.1 hypothetical protein Csa_014754 [Cuc...	[more]
KAA0044636.1	1.15e-114	95.51	protein CMSS1 [Cucumis melo var. makuwa]	[more]
XP_008453922.1	7.68e-113	94.38	PREDICTED: protein CMSS1 [Cucumis melo]	[more]
TYK16952.1	7.68e-113	94.38	protein CMSS1 [Cucumis melo var. makuwa]	[more]
XP_038906109.1	8.27e-98	82.87	protein CMS1 isoform X3 [Benincasa hispida]	[more]

BLAST of Cucsat.G16557 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUA9	2.13e-119	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017160 PE=4 SV=1	[more]
A0A5A7TR86	5.54e-115	95.51	Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003890 ...	[more]
A0A5D3CZG6	3.72e-113	94.38	Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00910 ...	[more]
A0A1S3BYM0	3.72e-113	94.38	protein CMSS1 OS=Cucumis melo OX=3656 GN=LOC103494501 PE=4 SV=1	[more]
A0A6J1GWA7	1.68e-88	76.76	protein CMS1 OS=Cucurbita moschata OX=3662 GN=LOC111458074 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 105..216 e-value: 3.0E-6 score: 28.5
IPR032704	Protein Cms1	PFAM	PF14617	CMS1	coord: 18..232 e-value: 1.5E-23 score: 83.5
IPR032704	Protein Cms1	PANTHER	PTHR24030	PROTEIN CMSS1	coord: 15..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G16557.T1	Cucsat.G16557.T1	mRNA
Cucsat.G16557.T2	Cucsat.G16557.T2	mRNA
Cucsat.G16557.T4	Cucsat.G16557.T4	mRNA
Cucsat.G16557.T5	Cucsat.G16557.T5	mRNA
Cucsat.G16557.T11	Cucsat.G16557.T11	mRNA
Cucsat.G16557.T6	Cucsat.G16557.T6	mRNA
Cucsat.G16557.T3	Cucsat.G16557.T3	mRNA
Cucsat.G16557.T7	Cucsat.G16557.T7	mRNA
Cucsat.G16557.T8	Cucsat.G16557.T8	mRNA
Cucsat.G16557.T12	Cucsat.G16557.T12	mRNA
Cucsat.G16557.T9	Cucsat.G16557.T9	mRNA
Cucsat.G16557.T13	Cucsat.G16557.T13	mRNA
Cucsat.G16557.T10	Cucsat.G16557.T10	mRNA