Cucsat.G16292.T4 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16292.T4
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	protein TIC 40, chloroplastic
Location	ctg2246: 440463 .. 443892 (+)
RNA-Seq Expression	Cucsat.G16292.T4
Synteny	Cucsat.G16292.T4

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGATAAGCATCGTGTGAGACCTATAATTTTATTAGTGTAACAACACTTTTGTAATTGTATCGATTTGGATTCTCAATTAAGTTTTTTTTCTTTTAAAGTAGTCCATGCATCTATTCTAGATCGTCCATTTTATTAATTTAACATTTGAAGAAGCCACGTGTGAGAATTGAATGTTGGATGATTATCAAATGCAAGCTTAATAAAGGGTCTAAATTGGTTCACTTATATCAATTTACAAATTTAATTGAAACAATTATATGTTTCACACGATATCTATCAAACTAAGTTTGATGAAGGGTGTTAAACTGTTAATTGATGGACTTCAACTACAACGTGGAAGTATGATTATTATAGTGTTGCATATTGTACTATTATTCATTATTATAGTGTTGCATATTGTACTATTATTCTTTAAGCAGCCTCACAAGTCACAGATATATGAAAATGAAAGCTATATTATTGGGCCTTTTTTCTACCATGTTTTTGTTACTCCTACTACTAATTACATTCAGATGGTGAATTTTGTTACTCCTACTAATTATATTCTGTACATTATTTTGAACTTCACAATCTAGAATAAATTTCTGGTGTTTCTGTGGTTTTCTTTGGGGGCATACTTGGGAGATTGGCTACTTAGTTTGAAATTTTACTTGAGCAGTTTCTATTTTCTAATCTTCAGCAAGGCATCACTTATTTATTAGCTATATTGAATAGGGATGATGCAAAATCCATTATATCGCCAACAATTAGAAGAAATGCTGTAAGTTCAGTTTATTTATTTCTTTTTCCTCCTTTATAGAAATAATTATTTTATTCTATTCAAAGACTTCTCATATATATCAACGTTCGAATATTTGATGATGACATTTTTCCAGGGGTTGCTTATCCCAATTGTTTTTGAGACATAATTGATAGGTTGGACAGACTGGAGGTGTCGGTGCCTGTGGATGCGGACATATTTAAATAGTTATTTGTGCTTAATTTTATATCATTTGTATAACATTCAATAGTATATAATGTTACTTTTCATTTCATGGATGCGAGGTGCTAAACAATAATTACATGCTCGTATTTCTTGTCCCACTGTCTTCTCATTTTCATCATCTTAGTCCATTGGGTTAGAAGTTTCTAATATGTTTGAAATAGCGACATAACTACATCTTCTAAAGTGGTTGTTTTTTTCCATACATAATGTTTGAAGTATGGCTTTGCGTTTAATCACTTTATAAGTAAAACATTTGAAGCATGTGATATAACACTATTCTTAATCATTACTCTCAGTAACAATATGAGTGGAAGCCCACAATGGGACGGTCGCCTCATGGATTCTTTGAAGAACTTTGATCTTAGTAGCCCTGAAGTTAAGCAGCAATTTGGTCAGTCAAGTTGATCTCCTTTGATTTTGTACATTTTGTCTATAGTTGTTTCGTGGGTGTTAAATGGCTTGAATACTATTCTGTTGGCATTTGTTATGACGTCATATATTTCATATATAGCTGAGATGATGATATTTGTGATTTTCTGGTTGCATTGCAATCATATATTCTTCCACTCTTAAAAAAATCTGACCAACATTTGATTGTGTTTTTTGGTCAATAATTGATGAGCTCTGAAGTTTTTGTTAACTTTTATTCAGTTTTGGTTTTTTGATGCTGTTTGTTTCCCTTCTGGCTGAAATTGATTTAAATATATTTTTTGAAATTGAGTTGTAAAATCACGATTCATGAAGTCTCAGAATTAATAATTTCATTTAATATATCAATATGTTTTCGTGAGTTGGTACTTTTTAGAAATTAGATTTTAAAACAACTTTTATGTAATTAGGAATTAAAACCGTTTTCCCCCATGTTCCTGTGATGTTTTCTCAATTAGTTATTCATTTATATTAATAGTAAAAATAATTTAGGCTTGCTCTTCATTTTTGTACCTTGACAGATCAAATTGGGCTTACACCTGAAGAAGTTATTTCAAAAATTATGGCCAATCCGGAAATTGCAATGGCATTTCAAAATCCAAGAGTTCAAGCAGCCATCATGGATGTATGTTCTACTTAAGGTTGATAAATTTTTGGTTTCGAACCTAATATTTTGATTTTACTTTTTGCAGTGTTCACAAAATCCACTGAGTATCACAAAGTATCAAAACGACAAAGAGGTACGTGATTTGCACTTCCATCTATCACTCGGCTTATATAGAATCCAAACCAAGTTAACATAAATTCAGAATTTAACTTTCTTAATTCTGGTGGAAGACCTCTTTTTGCTGATTGTTGGTATATATTTTATGTAGTTAACTTGTTCATTCTCAACTTCACTTTATGCCTTTCTACGTTCATTCACATCGCTTCTATTTAATAATTAGGAAACTGTGGAGTTCTGTTGGAACATCCATTTCTGTTGTGATATATGGTCTGTAGATCTATTGTTTAGCTGTTTGTTCCATCATTTTTGGCTTTGTGTTTCGTGCGTGCATCTGCATATACCTTCTCATTCAATTCCTGCTGACGAAAGTTCCGTCAATTAAAGAAAATAAACACATCGCCAAAACTTGAGAGAATAACTTAACTGCTTGAGACAGTATATGTTTGAGTTCAGAAATCTGAATTTCAACCATCCCATGATCAACTCTTAAAAGAAAAAACCTATTGAATCTGTTCTTTCACACATGCGGTTGATTGTTTCATTTGTCTTTTTGTAATTTTCGATGTGATATTTTTGGACTTGTATTTCTTATTTTCTTGGGCAGATGAGTATTGATTTCCATTGCCTTATTTCTTTCCAACTATCAATAGGATATCACTCTCTCTCTTCTCTCATTTCTTTTATATTTTTTTTTTCTTTCTATTCCTTTAGGTCATGGACGTTTTCAATAAGATATCAGAACTATTCCCCGGAGTTTCTGGAGCACCATGATAGTTGTAGCTGTATTAGTACTGAATAGTATAAAATAACAAAATGTGAATTTGTGGAAGCTTGAGCATGGTTCTTCCCTGTCCAATTGCAAAATAAGTTGGGGGAAGCCATATCGATCTTCTAGTTCTCGAAACGAAGTTAGCTGAGTAAGGTCTCACCTGCTTCAATTACATGATATATATTGGAAATTTTTGGGTGAGCTAATTCTTTTTTCCCTTTTATAAACTAAGTTTCCTGTGTATTACTTACTTTCTCTGGAGATCATGTATTTATTAGTGGTTTTGCATTTAATCAGTTTTATAGGAACCTCCTTTTCACAGTGGTCAGATTGTAACTAAGAATCTTTTATGTCCCTTGATACATCAAGGCGGTCGATGTAATTTATTAGTAATTTTGGCATATTCCTATTTGCTTTAATTGAATGGCATTGTTGGAGGTAATGGCTGAATGAGAATATTGACCACCCTTTATTTGTAAACTAGTTGTAAGATTGTATGTTTTGACTTTCCATTTTT

Coding sequence (CDS)

ATGATGCAAAATCCATTATATCGCCAACAATTAGAAGAAATGCTTAACAATATGAGTGGAAGCCCACAATGGGACGGTCGCCTCATGGATTCTTTGAAGAACTTTGATCTTAGTAGCCCTGAAGTTAAGCAGCAATTTGATCAAATTGGGCTTACACCTGAAGAAGTTATTTCAAAAATTATGGCCAATCCGGAAATTGCAATGGCATTTCAAAATCCAAGAGTTCAAGCAGCCATCATGGATTGTTCACAAAATCCACTGAGTATCACAAAGTATCAAAACGACAAAGAGGTCATGGACGTTTTCAATAAGATATCAGAACTATTCCCCGGAGTTTCTGGAGCACCATGA

Protein sequence

MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP

Homology

[Close]

BLAST of Cucsat.G16292.T4 vs. ExPASy Swiss-Prot
Match: Q8GT66 (Protein TIC 40, chloroplastic OS=Pisum sativum OX=3888 GN=TIC40 PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.2e-52
Identity = 98/116 (84.48%), Postives = 108/116 (93.10%), Query Frame = 0


Query: 1   MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 60
           MMQNP YRQQLE MLNNM G  +WD R+MD+LKNFDL+SP+VKQQFDQIGL+P+EVISKI
Sbjct: 321 MMQNPEYRQQLEAMLNNMGGGTEWDSRMMDTLKNFDLNSPDVKQQFDQIGLSPQEVISKI 380

Query: 61  MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 117
           MANP++AMAFQNPRVQAAIMDCSQNP+SI KYQNDKEVMDVFNKISELFPGVSG P
Sbjct: 381 MANPDVAMAFQNPRVQAAIMDCSQNPMSIVKYQNDKEVMDVFNKISELFPGVSGPP 436

[Close]

BLAST of Cucsat.G16292.T4 vs. ExPASy Swiss-Prot
Match: Q9FMD5 (Protein TIC 40, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC40 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.5e-48
Identity = 89/114 (78.07%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 60
           M++NP YRQQL++MLNNMSGS +WD R+ D+LKNFDL+SPEVKQQF+QIGLTPEEVISKI
Sbjct: 334 MLKNPQYRQQLQDMLNNMSGSGEWDKRMTDTLKNFDLNSPEVKQQFNQIGLTPEEVISKI 393

Query: 61  MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSG 115
           M NP++AMAFQNPRVQAA+M+CS+NP++I KYQNDKEVMDVFNKIS+LFPG++G
Sbjct: 394 MENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGMTG 447

[Close]

BLAST of Cucsat.G16292.T4 vs. ExPASy Swiss-Prot
Match: P50503 (Hsc70-interacting protein OS=Rattus norvegicus OX=10116 GN=St13 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.3e-07
Identity = 23/57 (40.35%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 57  ISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVS 114
           +++I+++PE+  A Q+P V  A  D +QNP +++KYQN+ +VM++ +K+S  F G S
Sbjct: 312 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQNNPKVMNLISKLSAKFGGHS 368

[Close]

BLAST of Cucsat.G16292.T4 vs. ExPASy Swiss-Prot
Match: Q5ZLF0 (Hsc70-interacting protein OS=Gallus gallus OX=9031 GN=ST13 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-06
Identity = 22/53 (41.51%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 57  ISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELF 110
           +++I+++PE+  A Q+P V AA  D +QNP +++KYQN+ +VM +  K+S  F
Sbjct: 305 LNEILSDPEVLAAMQDPEVMAAFQDVAQNPANMSKYQNNPKVMSLITKLSAKF 357

[Close]

BLAST of Cucsat.G16292.T4 vs. ExPASy Swiss-Prot
Match: Q99L47 (Hsc70-interacting protein OS=Mus musculus OX=10090 GN=St13 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-06
Identity = 22/57 (38.60%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 57  ISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVS 114
           +++I+++PE+  A Q+P V  A  D +QNP +++KYQ++ +VM++ +K+S  F G S
Sbjct: 315 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQSNPKVMNLISKLSAKFGGQS 371

[Close]

BLAST of Cucsat.G16292.T4 vs. NCBI nr
Match: TYK08643.1 (protein TIC 40 [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (593), Expect = 1.26e-74
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 60
           MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI
Sbjct: 170 MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 229

Query: 61  MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 116
           MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 230 MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 285

[Close]

BLAST of Cucsat.G16292.T4 vs. NCBI nr
Match: KAA0066218.1 (protein TIC 40 [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (593), Expect = 1.26e-74
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 60
           MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI
Sbjct: 170 MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 229

Query: 61  MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 116
           MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 230 MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 285

[Close]

BLAST of Cucsat.G16292.T4 vs. NCBI nr
Match: XP_008463125.1 (PREDICTED: protein TIC 40, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 233 bits (593), Expect = 5.74e-73
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 60
           MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI
Sbjct: 301 MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 360

Query: 61  MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 116
           MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 361 MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 416

[Close]

BLAST of Cucsat.G16292.T4 vs. NCBI nr
Match: XP_008463124.1 (PREDICTED: protein TIC 40, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 233 bits (593), Expect = 6.22e-73
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 60
           MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI
Sbjct: 304 MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 363

Query: 61  MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 116
           MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 364 MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 419

[Close]

BLAST of Cucsat.G16292.T4 vs. NCBI nr
Match: XP_004148914.1 (protein TIC 40, chloroplastic [Cucumis sativus] >KAE8648338.1 hypothetical protein Csa_023106 [Cucumis sativus])

HSP 1 Score: 233 bits (593), Expect = 6.22e-73
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 60
           MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI
Sbjct: 304 MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 363

Query: 61  MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 116
           MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 364 MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 419

[Close]

BLAST of Cucsat.G16292.T4 vs. ExPASy TrEMBL
Match: A0A0A0KML6 (STI1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G314860 PE=4 SV=1)

HSP 1 Score: 233 bits (593), Expect = 8.02e-77
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 60
           MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI
Sbjct: 37  MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 96

Query: 61  MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 116
           MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 97  MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 152

[Close]

BLAST of Cucsat.G16292.T4 vs. ExPASy TrEMBL
Match: A0A5D3C9U5 (Protein TIC 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold871G00040 PE=4 SV=1)

HSP 1 Score: 233 bits (593), Expect = 6.09e-75
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 60
           MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI
Sbjct: 170 MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 229

Query: 61  MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 116
           MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 230 MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 285

[Close]

BLAST of Cucsat.G16292.T4 vs. ExPASy TrEMBL
Match: A0A5A7VET2 (Protein TIC 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002380 PE=4 SV=1)

HSP 1 Score: 233 bits (593), Expect = 6.09e-75
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 60
           MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI
Sbjct: 170 MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 229

Query: 61  MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 116
           MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 230 MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 285

[Close]

BLAST of Cucsat.G16292.T4 vs. ExPASy TrEMBL
Match: A0A1S3CIH5 (protein TIC 40, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501349 PE=4 SV=1)

HSP 1 Score: 233 bits (593), Expect = 2.78e-73
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 60
           MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI
Sbjct: 301 MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 360

Query: 61  MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 116
           MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 361 MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 416

[Close]

BLAST of Cucsat.G16292.T4 vs. ExPASy TrEMBL
Match: A0A1S3CIG9 (protein TIC 40, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501349 PE=4 SV=1)

HSP 1 Score: 233 bits (593), Expect = 3.01e-73
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 60
           MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI
Sbjct: 304 MMQNPLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKI 363

Query: 61  MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 116
           MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 364 MANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 419

The following BLAST results are available for this feature:

BLAST of Cucsat.G16292.T4 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GT66	2.2e-52	84.48	Protein TIC 40, chloroplastic OS=Pisum sativum OX=3888 GN=TIC40 PE=1 SV=1	[more]
Q9FMD5	2.5e-48	78.07	Protein TIC 40, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC40 PE=1 SV=1	[more]
P50503	6.3e-07	40.35	Hsc70-interacting protein OS=Rattus norvegicus OX=10116 GN=St13 PE=1 SV=1	[more]
Q5ZLF0	1.4e-06	41.51	Hsc70-interacting protein OS=Gallus gallus OX=9031 GN=ST13 PE=2 SV=1	[more]
Q99L47	1.8e-06	38.60	Hsc70-interacting protein OS=Mus musculus OX=10090 GN=St13 PE=1 SV=1	[more]

BLAST of Cucsat.G16292.T4 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK08643.1	1.26e-74	100.00	protein TIC 40 [Cucumis melo var. makuwa]	[more]
KAA0066218.1	1.26e-74	100.00	protein TIC 40 [Cucumis melo var. makuwa]	[more]
XP_008463125.1	5.74e-73	100.00	PREDICTED: protein TIC 40, chloroplastic isoform X2 [Cucumis melo]	[more]
XP_008463124.1	6.22e-73	100.00	PREDICTED: protein TIC 40, chloroplastic isoform X1 [Cucumis melo]	[more]
XP_004148914.1	6.22e-73	100.00	protein TIC 40, chloroplastic [Cucumis sativus] >KAE8648338.1 hypothetical prote...	[more]

BLAST of Cucsat.G16292.T4 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KML6	8.02e-77	100.00	STI1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G314860 PE=4 S...	[more]
A0A5D3C9U5	6.09e-75	100.00	Protein TIC 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold871G00040...	[more]
A0A5A7VET2	6.09e-75	100.00	Protein TIC 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002380...	[more]
A0A1S3CIH5	2.78e-73	100.00	protein TIC 40, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501349...	[more]
A0A1S3CIG9	3.01e-73	100.00	protein TIC 40, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501349...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006636	Heat shock chaperonin-binding	SMART	SM00727	CBM	coord: 53..92 e-value: 7.7E-4 score: 28.8
IPR041243	STI1 domain	PFAM	PF17830	STI1	coord: 54..105 e-value: 7.3E-13 score: 48.3
None	No IPR available	GENE3D	1.10.260.100		coord: 53..114 e-value: 1.4E-24 score: 87.8
None	No IPR available	PANTHER	PTHR47296:SF1	PROTEIN TIC 40, CHLOROPLASTIC	coord: 1..115
None	No IPR available	PANTHER	PTHR47296	PROTEIN TIC 40, CHLOROPLASTIC	coord: 1..115

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16292	Cucsat.G16292	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16292.T4.E1	Cucsat.G16292.T4.E1	exon
Cucsat.G16292.T4.E2	Cucsat.G16292.T4.E2	exon
Cucsat.G16292.T4.E3	Cucsat.G16292.T4.E3	exon
Cucsat.G16292.T4.E4	Cucsat.G16292.T4.E4	exon
Cucsat.G16292.T4.E5	Cucsat.G16292.T4.E5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16292.T4.C1	Cucsat.G16292.T4.C1	CDS
Cucsat.G16292.T4.C2	Cucsat.G16292.T4.C2	CDS
Cucsat.G16292.T4.C3	Cucsat.G16292.T4.C3	CDS
Cucsat.G16292.T4.C4	Cucsat.G16292.T4.C4	CDS
Cucsat.G16292.T4.C5	Cucsat.G16292.T4.C5	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16292.T4	Cucsat.G16292.T4-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0045037	protein import into chloroplast stroma
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane