Cucsat.G16292.T2 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16292.T2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	protein TIC 40, chloroplastic
Location	ctg2246: 440032 .. 443892 (+)
RNA-Seq Expression	Cucsat.G16292.T2
Synteny	Cucsat.G16292.T2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAATCCAGAAACATTCAAGTGTAAGTCTATTGATTAATTCAATCTTCAGGCAATATGCTTTCAATAGAAGTGAGAAATCAGGGTATAAATCAAAAAGATTAAGGCCAAGGGGTGTTCCTGCTCAAGATAGAAGCGGGAATCCTAGGAGGGGGAGGTTATGTTGGAAGTAAATAAGAAGAAAGTTAATGAACCAAAATTGAAAGGAAAAAACAAATGAAAAGAAAATGTAAGTATGAACTAAGTGGGTACTGTGAATGCAAGGAATAAATTAACTTGTGATTCCAACGTGATACAAGCTAGTTTTTCATTTCTATTTTAATCTTCTAAAATACATATTCGAAAAGTATTAATTTACACAACTAAGGGGGGTTGGTATCAATTTAATCCTTAAACTTTCATGTGTCAATCTATACTCTCCATTACATTTTGTTTGGATAAGCATCGTGTGAGACCTATAATTTTATTAGTGTAACAACACTTTTGTAATTGTATCGATTTGGATTCTCAATTAAGTTTTTTTTCTTTTAAAGTAGTCCATGCATCTATTCTAGATCGTCCATTTTATTAATTTAACATTTGAAGAAGCCACGTGTGAGAATTGAATGTTGGATGATTATCAAATGCAAGCTTAATAAAGGGTCTAAATTGGTTCACTTATATCAATTTACAAATTTAATTGAAACAATTATATGTTTCACACGATATCTATCAAACTAAGTTTGATGAAGGGTGTTAAACTGTTAATTGATGGACTTCAACTACAACGTGGAAGTATGATTATTATAGTGTTGCATATTGTACTATTATTCATTATTATAGTGTTGCATATTGTACTATTATTCTTTAAGCAGCCTCACAAGTCACAGATATATGAAAATGAAAGCTATATTATTGGGCCTTTTTTCTACCATGTTTTTGTTACTCCTACTACTAATTACATTCAGATGGTGAATTTTGTTACTCCTACTAATTATATTCTGTACATTATTTTGAACTTCACAATCTAGAATAAATTTCTGGTGTTTCTGTGGTTTTCTTTGGGGGCATACTTGGGAGATTGGCTACTTAGTTTGAAATTTTACTTGAGCAGTTTCTATTTTCTAATCTTCAGCAAGGCATCACTTATTTATTAGCTATATTGAATAGGGATGATGCAAAATCCATTATATCGCCAACAATTAGAAGAAATGCTGTAAGTTCAGTTTATTTATTTCTTTTTCCTCCTTTATAGAAATAATTATTTTATTCTATTCAAAGACTTCTCATATATATCAACGTTCGAATATTTGATGATGACATTTTTCCAGGGGTTGCTTATCCCAATTGTTTTTGAGACATAATTGATAGGTTGGACAGACTGGAGGTGTCGGTGCCTGTGGATGCGGACATATTTAAATAGTTATTTGTGCTTAATTTTATATCATTTGTATAACATTCAATAGTATATAATGTTACTTTTCATTTCATGGATGCGAGGTGCTAAACAATAATTACATGCTCGTATTTCTTGTCCCACTGTCTTCTCATTTTCATCATCTTAGTCCATTGGGTTAGAAGTTTCTAATATGTTTGAAATAGCGACATAACTACATCTTCTAAAGTGGTTGTTTTTTTCCATACATAATGTTTGAAGTATGGCTTTGCGTTTAATCACTTTATAAGTAAAACATTTGAAGCATGTGATATAACACTATTCTTAATCATTACTCTCAGTAACAATATGAGTGGAAGCCCACAATGGGACGGTCGCCTCATGGATTCTTTGAAGAACTTTGATCTTAGTAGCCCTGAAGTTAAGCAGCAATTTGGTCAGTCAAGTTGATCTCCTTTGATTTTGTACATTTTGTCTATAGTTGTTTCGTGGGTGTTAAATGGCTTGAATACTATTCTGTTGGCATTTGTTATGACGTCATATATTTCATATATAGCTGAGATGATGATATTTGTGATTTTCTGGTTGCATTGCAATCATATATTCTTCCACTCTTAAAAAAATCTGACCAACATTTGATTGTGTTTTTTGGTCAATAATTGATGAGCTCTGAAGTTTTTGTTAACTTTTATTCAGTTTTGGTTTTTTGATGCTGTTTGTTTCCCTTCTGGCTGAAATTGATTTAAATATATTTTTTGAAATTGAGTTGTAAAATCACGATTCATGAAGTCTCAGAATTAATAATTTCATTTAATATATCAATATGTTTTCGTGAGTTGGTACTTTTTAGAAATTAGATTTTAAAACAACTTTTATGTAATTAGGAATTAAAACCGTTTTCCCCCATGTTCCTGTGATGTTTTCTCAATTAGTTATTCATTTATATTAATAGTAAAAATAATTTAGGCTTGCTCTTCATTTTTGTACCTTGACAGATCAAATTGGGCTTACACCTGAAGAAGTTATTTCAAAAATTATGGCCAATCCGGAAATTGCAATGGCATTTCAAAATCCAAGAGTTCAAGCAGCCATCATGGATGTATGTTCTACTTAAGGTTGATAAATTTTTGGTTTCGAACCTAATATTTTGATTTTACTTTTTGCAGTGTTCACAAAATCCACTGAGTATCACAAAGTATCAAAACGACAAAGAGGTACGTGATTTGCACTTCCATCTATCACTCGGCTTATATAGAATCCAAACCAAGTTAACATAAATTCAGAATTTAACTTTCTTAATTCTGGTGGAAGACCTCTTTTTGCTGATTGTTGGTATATATTTTATGTAGTTAACTTGTTCATTCTCAACTTCACTTTATGCCTTTCTACGTTCATTCACATCGCTTCTATTTAATAATTAGGAAACTGTGGAGTTCTGTTGGAACATCCATTTCTGTTGTGATATATGGTCTGTAGATCTATTGTTTAGCTGTTTGTTCCATCATTTTTGGCTTTGTGTTTCGTGCGTGCATCTGCATATACCTTCTCATTCAATTCCTGCTGACGAAAGTTCCGTCAATTAAAGAAAATAAACACATCGCCAAAACTTGAGAGAATAACTTAACTGCTTGAGACAGTATATGTTTGAGTTCAGAAATCTGAATTTCAACCATCCCATGATCAACTCTTAAAAGAAAAAACCTATTGAATCTGTTCTTTCACACATGCGGTTGATTGTTTCATTTGTCTTTTTGTAATTTTCGATGTGATATTTTTGGACTTGTATTTCTTATTTTCTTGGGCAGATGAGTATTGATTTCCATTGCCTTATTTCTTTCCAACTATCAATAGGATATCACTCTCTCTCTTCTCTCATTTCTTTTATATTTTTTTTTTCTTTCTATTCCTTTAGGTCATGGACGTTTTCAATAAGATATCAGAACTATTCCCCGGAGTTTCTGGAGCACCATGATAGTTGTAGCTGTATTAGTACTGAATAGTATAAAATAACAAAATGTGAATTTGTGGAAGCTTGAGCATGGTTCTTCCCTGTCCAATTGCAAAATAAGTTGGGGGAAGCCATATCGATCTTCTAGTTCTCGAAACGAAGTTAGCTGAGTAAGGTCTCACCTGCTTCAATTACATGATATATATTGGAAATTTTTGGGTGAGCTAATTCTTTTTTCCCTTTTATAAACTAAGTTTCCTGTGTATTACTTACTTTCTCTGGAGATCATGTATTTATTAGTGGTTTTGCATTTAATCAGTTTTATAGGAACCTCCTTTTCACAGTGGTCAGATTGTAACTAAGAATCTTTTATGTCCCTTGATACATCAAGGCGGTCGATGTAATTTATTAGTAATTTTGGCATATTCCTATTTGCTTTAATTGAATGGCATTGTTGGAGGTAATGGCTGAATGAGAATATTGACCACCCTTTATTTGTAAACTAGTTGTAAGATTGTATGTTTTGACTTTCCATTTTT

Coding sequence (CDS)

ATGAGTGGAAGCCCACAATGGGACGGTCGCCTCATGGATTCTTTGAAGAACTTTGATCTTAGTAGCCCTGAAGTTAAGCAGCAATTTGATCAAATTGGGCTTACACCTGAAGAAGTTATTTCAAAAATTATGGCCAATCCGGAAATTGCAATGGCATTTCAAAATCCAAGAGTTCAAGCAGCCATCATGGATTGTTCACAAAATCCACTGAGTATCACAAAGTATCAAAACGACAAAGAGGTCATGGACGTTTTCAATAAGATATCAGAACTATTCCCCGGAGTTTCTGGAGCACCATGA

Protein sequence

MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP

Homology

[Close]

BLAST of Cucsat.G16292.T2 vs. ExPASy Swiss-Prot
Match: Q8GT66 (Protein TIC 40, chloroplastic OS=Pisum sativum OX=3888 GN=TIC40 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.2e-44
Identity = 83/99 (83.84%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 60
           M G  +WD R+MD+LKNFDL+SP+VKQQFDQIGL+P+EVISKIMANP++AMAFQNPRVQA
Sbjct: 338 MGGGTEWDSRMMDTLKNFDLNSPDVKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQA 397

Query: 61  AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 100
           AIMDCSQNP+SI KYQNDKEVMDVFNKISELFPGVSG P
Sbjct: 398 AIMDCSQNPMSIVKYQNDKEVMDVFNKISELFPGVSGPP 436

[Close]

BLAST of Cucsat.G16292.T2 vs. ExPASy Swiss-Prot
Match: Q9FMD5 (Protein TIC 40, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC40 PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 7.4e-41
Identity = 77/97 (79.38%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 1   MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 60
           MSGS +WD R+ D+LKNFDL+SPEVKQQF+QIGLTPEEVISKIM NP++AMAFQNPRVQA
Sbjct: 351 MSGSGEWDKRMTDTLKNFDLNSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQA 410

Query: 61  AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSG 98
           A+M+CS+NP++I KYQNDKEVMDVFNKIS+LFPG++G
Sbjct: 411 ALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGMTG 447

[Close]

BLAST of Cucsat.G16292.T2 vs. ExPASy Swiss-Prot
Match: P50503 (Hsc70-interacting protein OS=Rattus norvegicus OX=10116 GN=St13 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-07
Identity = 23/57 (40.35%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 40  ISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVS 97
           +++I+++PE+  A Q+P V  A  D +QNP +++KYQN+ +VM++ +K+S  F G S
Sbjct: 312 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQNNPKVMNLISKLSAKFGGHS 368

[Close]

BLAST of Cucsat.G16292.T2 vs. ExPASy Swiss-Prot
Match: Q5ZLF0 (Hsc70-interacting protein OS=Gallus gallus OX=9031 GN=ST13 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 22/53 (41.51%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 40  ISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELF 93
           +++I+++PE+  A Q+P V AA  D +QNP +++KYQN+ +VM +  K+S  F
Sbjct: 305 LNEILSDPEVLAAMQDPEVMAAFQDVAQNPANMSKYQNNPKVMSLITKLSAKF 357

[Close]

BLAST of Cucsat.G16292.T2 vs. ExPASy Swiss-Prot
Match: Q99L47 (Hsc70-interacting protein OS=Mus musculus OX=10090 GN=St13 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 22/57 (38.60%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 40  ISKIMANPEIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVS 97
           +++I+++PE+  A Q+P V  A  D +QNP +++KYQ++ +VM++ +K+S  F G S
Sbjct: 315 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQSNPKVMNLISKLSAKFGGQS 371

[Close]

BLAST of Cucsat.G16292.T2 vs. NCBI nr
Match: TYK08643.1 (protein TIC 40 [Cucumis melo var. makuwa])

HSP 1 Score: 202 bits (513), Expect = 8.35e-63
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 60
           MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA
Sbjct: 187 MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 246

Query: 61  AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 99
           AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 247 AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 285

[Close]

BLAST of Cucsat.G16292.T2 vs. NCBI nr
Match: KAA0066218.1 (protein TIC 40 [Cucumis melo var. makuwa])

HSP 1 Score: 202 bits (513), Expect = 8.35e-63
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 60
           MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA
Sbjct: 187 MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 246

Query: 61  AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 99
           AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 247 AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 285

[Close]

BLAST of Cucsat.G16292.T2 vs. NCBI nr
Match: XP_008463125.1 (PREDICTED: protein TIC 40, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 202 bits (513), Expect = 2.95e-61
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 60
           MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA
Sbjct: 318 MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 377

Query: 61  AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 99
           AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 378 AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 416

[Close]

BLAST of Cucsat.G16292.T2 vs. NCBI nr
Match: XP_008463124.1 (PREDICTED: protein TIC 40, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 202 bits (513), Expect = 3.17e-61
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 60
           MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA
Sbjct: 321 MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 380

Query: 61  AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 99
           AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 381 AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 419

[Close]

BLAST of Cucsat.G16292.T2 vs. NCBI nr
Match: XP_004148914.1 (protein TIC 40, chloroplastic [Cucumis sativus] >KAE8648338.1 hypothetical protein Csa_023106 [Cucumis sativus])

HSP 1 Score: 202 bits (513), Expect = 3.17e-61
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 60
           MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA
Sbjct: 321 MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 380

Query: 61  AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 99
           AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 381 AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 419

[Close]

BLAST of Cucsat.G16292.T2 vs. ExPASy TrEMBL
Match: A0A0A0KML6 (STI1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G314860 PE=4 SV=1)

HSP 1 Score: 202 bits (513), Expect = 6.20e-65
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 60
           MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA
Sbjct: 54  MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 113

Query: 61  AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 99
           AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 114 AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 152

[Close]

BLAST of Cucsat.G16292.T2 vs. ExPASy TrEMBL
Match: A0A5D3C9U5 (Protein TIC 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold871G00040 PE=4 SV=1)

HSP 1 Score: 202 bits (513), Expect = 4.04e-63
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 60
           MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA
Sbjct: 187 MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 246

Query: 61  AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 99
           AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 247 AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 285

[Close]

BLAST of Cucsat.G16292.T2 vs. ExPASy TrEMBL
Match: A0A5A7VET2 (Protein TIC 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002380 PE=4 SV=1)

HSP 1 Score: 202 bits (513), Expect = 4.04e-63
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 60
           MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA
Sbjct: 187 MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 246

Query: 61  AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 99
           AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 247 AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 285

[Close]

BLAST of Cucsat.G16292.T2 vs. ExPASy TrEMBL
Match: A0A1S3CIH5 (protein TIC 40, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501349 PE=4 SV=1)

HSP 1 Score: 202 bits (513), Expect = 1.43e-61
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 60
           MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA
Sbjct: 318 MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 377

Query: 61  AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 99
           AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 378 AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 416

[Close]

BLAST of Cucsat.G16292.T2 vs. ExPASy TrEMBL
Match: A0A1S3CIG9 (protein TIC 40, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501349 PE=4 SV=1)

HSP 1 Score: 202 bits (513), Expect = 1.54e-61
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 60
           MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA
Sbjct: 321 MSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 380

Query: 61  AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 99
           AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP
Sbjct: 381 AIMDCSQNPLSITKYQNDKEVMDVFNKISELFPGVSGAP 419

The following BLAST results are available for this feature:

BLAST of Cucsat.G16292.T2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GT66	3.2e-44	83.84	Protein TIC 40, chloroplastic OS=Pisum sativum OX=3888 GN=TIC40 PE=1 SV=1	[more]
Q9FMD5	7.4e-41	79.38	Protein TIC 40, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC40 PE=1 SV=1	[more]
P50503	5.3e-07	40.35	Hsc70-interacting protein OS=Rattus norvegicus OX=10116 GN=St13 PE=1 SV=1	[more]
Q5ZLF0	1.2e-06	41.51	Hsc70-interacting protein OS=Gallus gallus OX=9031 GN=ST13 PE=2 SV=1	[more]
Q99L47	1.6e-06	38.60	Hsc70-interacting protein OS=Mus musculus OX=10090 GN=St13 PE=1 SV=1	[more]

BLAST of Cucsat.G16292.T2 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK08643.1	8.35e-63	100.00	protein TIC 40 [Cucumis melo var. makuwa]	[more]
KAA0066218.1	8.35e-63	100.00	protein TIC 40 [Cucumis melo var. makuwa]	[more]
XP_008463125.1	2.95e-61	100.00	PREDICTED: protein TIC 40, chloroplastic isoform X2 [Cucumis melo]	[more]
XP_008463124.1	3.17e-61	100.00	PREDICTED: protein TIC 40, chloroplastic isoform X1 [Cucumis melo]	[more]
XP_004148914.1	3.17e-61	100.00	protein TIC 40, chloroplastic [Cucumis sativus] >KAE8648338.1 hypothetical prote...	[more]

BLAST of Cucsat.G16292.T2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KML6	6.20e-65	100.00	STI1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G314860 PE=4 S...	[more]
A0A5D3C9U5	4.04e-63	100.00	Protein TIC 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold871G00040...	[more]
A0A5A7VET2	4.04e-63	100.00	Protein TIC 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002380...	[more]
A0A1S3CIH5	1.43e-61	100.00	protein TIC 40, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501349...	[more]
A0A1S3CIG9	1.54e-61	100.00	protein TIC 40, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501349...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006636	Heat shock chaperonin-binding	SMART	SM00727	CBM	coord: 36..75 e-value: 7.7E-4 score: 28.8
IPR041243	STI1 domain	PFAM	PF17830	STI1	coord: 37..88 e-value: 4.9E-13 score: 48.8
None	No IPR available	GENE3D	1.10.260.100		coord: 36..97 e-value: 8.9E-25 score: 88.4
None	No IPR available	PANTHER	PTHR47296	PROTEIN TIC 40, CHLOROPLASTIC	coord: 1..98

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16292	Cucsat.G16292	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16292.T2.E1	Cucsat.G16292.T2.E1	exon
Cucsat.G16292.T2.E2	Cucsat.G16292.T2.E2	exon
Cucsat.G16292.T2.E3	Cucsat.G16292.T2.E3	exon
Cucsat.G16292.T2.E4	Cucsat.G16292.T2.E4	exon
Cucsat.G16292.T2.E5	Cucsat.G16292.T2.E5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16292.T2.C1	Cucsat.G16292.T2.C1	CDS
Cucsat.G16292.T2.C2	Cucsat.G16292.T2.C2	CDS
Cucsat.G16292.T2.C3	Cucsat.G16292.T2.C3	CDS
Cucsat.G16292.T2.C4	Cucsat.G16292.T2.C4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16292.T2	Cucsat.G16292.T2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0045037	protein import into chloroplast stroma
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane