Cucsat.G13222.T14 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G13222.T14
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	NUC173 domain-containing protein
Location	ctg1838: 2664058 .. 2667146 (+)
RNA-Seq Expression	Cucsat.G13222.T14
Synteny	Cucsat.G13222.T14

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTACAATTATTTTTTGTTTGTTGTACTAAATCATAGCATTGCCATTAACTCATTTTTTTAATCTAATATCTCATAGGATGAAGTTTTGAGGTCATATGTGCACTCTTTGTTTTCTCTCTGCTCATGTAATATCTTGAGAAATATTTGACATGTTAATATGCCGGATGTCATTTATGTTGTGACGTAGGCAGAGGAAGACAGCAGGAAAGCAGCTTATGACATTCTTCATTGTATCAGTTGCAGCCTAAAAGATTTGTCGCATACAAATTCTGATGCACATAAAAAATTTGTGGCCATGGTAAGTGTTTATAATCTTTCCTTAGGATTTTAATTTATTTATGGTATCCATTTAAATATCAGCGACAAATGTGTTTATTGGGATGGGATGAGGAGAAAATTAAAGACCCTCTTTGGGATGAGGAGAAAATTTCTTTTGTACTTCAGTTTCTATTTGGAGGGCGAATTGACAGCCTTTTCTTTTTTTTGTCACCTCATGGTCTTTTGTTGCGTATTATGTATTCTCATTACAGTAATAGTCTTGTTTCTTTGAAAGAAATGATGTTAGCAGCAAAAGTTTTGTTTCTATCTCCGAAAGCATACAAGTTTTATCACAAATAATGTTTTAGGGTATGAAGGCCATTAAAGATTCCTATGTTACCTTGTTGGTAATTAGAATATGATTTTGTAGACCCTTAGATTGGGCTCTTTTGTATATCCTTTGGTCTATTTTACTCATCAAATAAATCATTTCTTATTTTTAAAAATCTAGTTTAATTTATTTTTTTTAATACGAAGAGGGTGTTGATTATGTTAATTCATATTAAAAATAAAAAATAAGTATTGCAAATCAATGCAATTATTTTTAAAAATTATTTTCAATGAGCAATTTAATGTCATGATCTTCTGATGGAATCTGGTTACTTCAGTTTAATAATTATGACAAGTTCTTCTATGGCTGATTCAGATAATGGGCTATCTGTCTGGTGCATCTCCTCATGTAAAAAGTGGAGCAATCTCTGCAGTCTCAGTGTTGATTTATGAAGACGCAGATATATGTCTTTCAATACCTGATCTTGTGCCCTCCATCTTATCTTTGCTACGAGGAAAGGCTATAGAAGTTATAAAAGTATGCATCTTAACTTTGGGTTCTAATATTATTTTCATTTTAATCTCAGAGATAACAAGTTGACCTGATTCGTTAAATAGGCAGTGCTGGGGTTCGTGAAAGTTTTAGTGTCTTCCTTGCAAGCTAAGCATCTTCAGAGCATCATTTCTGATATTCTTACGGCGGCTTTACCTTGGTCGTCTGTCTCAAGGCATCATTTTAGATCCAAGGTAACCCTTCAATTATATCAATAGAAACTTTTGGAATAAATATTTGTATGAATAACTAACTATACAGTATTCAATTCTACCAATTTCCTGTTTTATTCTTTTTTCCACTCAGACACTCGTAATTGTTGTTAATTATCCTCACAATATCTTCATAAACTTGTTCATTTTGCTAAAGGTCACAGTGATTTTGGAGATTCTCATTCGAAAATGTGGTTATGCTGCAATTGAGGGCTTTACTCCTGAAAATTACAAGGGTTTCATCAAACCTTTTGGGGAGGTGAATCTCTTGAGTCTTATGTAGTTTTACTCCCGAACTTTAATTAACTGCAGTTTTAGTCTGAATAAAAGTTCTGTTTATGGATTCATAGGCATCGTTAGGATAATCTCTTGTTGTCAGTCTCCTATTCAGTGTAACATTTGTAATTGAAACTGTAGCATGTTCCAATCGATCCATACTTGACTAGTTCACAGCTGGGTATACATAAATGTTATATGATACAAATACAATCTAAGTATTTGCCTGCTGAATGTATCTTTTCGAAGGGAGACGTAGAACAGAAAATACTTGTAGGTGTGAACTTCTGAATTACCCCCTAAACTTCTTTTATCCATGATTCGTCTACTTGCAGAAACGCCTTAACAAGACCAGTTCCAAGGATGTTGGTGATGCCAATACAGATGTTGCAGATTTATCCACTAACGGGTCTAGATCATTTGTTTCAAGCCAACTTGTTTTCAGTACGTTGTATATACATGTGCTTATTACGTTTAACTTTTTAATTGTCAGGGTGAGGGATAAGCAACAGGACGGGCTGGACTCTCTTCCCAAGAAAAATGAATCGGGTCATCACAGGAAAAGGAAGTGGGAAAAACCTTCCGGTTTCATCAGGAGCAAAACTGATAATGCATCCGCTGAGGATGGTAGTAGATTTAAGATGAGAAAAAGAGCTGCGACCTCCAGTAGTAAGAGGAGTTCAATGGTGGACGGTCCAGGAGACGGTCGGAGAACAAAATTTTCAAGACGTGGGGATCCTAGAAAGGAAGGAAAGGGAGGGATCAAACACGGAAACAGACATCAGAAAGAAAGATTTGGAGTTCGTAGGCCTTTTAAAGCTTCAAAATCTAATCACAATAACTCCTCTAGTTGATGATTGGGGATCTTATTAGTTGGGTATTTTTAGAACGGTAAACAACAGTTCTTGCAAGTTAGAAGTCCCACATTGCACAAGCCCCTGCATTGCTTGTTCGAATCGCCTGCATGCTCCTCTGTTTCAGGAAGATGTAATCAGGAACGCAATGAAAACGAATACGACATGAGCAGACCTGGTCCTTCTTTTAGAACTTTTTACAAGAAGGAAGCTCAATGCCAAATGTTTTGATGGTGGTGGTGAATTGGTCAGCTTAACACCGTGATGGTTCTCCAAGGCAACTCTCTTCTTTTTAAAACATGACATCACAAGTGATAGGTGAGAATTCAAACTTTTGCTTCAAATTAGAAAAGTATACATACATGTCTTACTTGTTTAATCATGCCCAATTTGGGGTTAGTTTACTTATAGTGTAAGTTTTACATTTAAGGTGTAAGATTGCTTGGTCTTTAATTTAATTTATTATCAATAAAGATTGTCATATAAAGATGTTCTTTATAGTATTGATTTGCTGTACAAGGTAGCAGCTTTGGAGATTTCAGTTCAAACAAAAATATTAAAACTGCTGAAGAGATTGGTTCGACCTTCAAATTTGAATTCCATAGA

Coding sequence (CDS)

ATGATAATGGGCTATCTGTCTGGTGCATCTCCTCATGTAAAAAGTGGAGCAATCTCTGCAGTCTCAGTGTTGATTTATGAAGACGCAGATATATGTCTTTCAATACCTGATCTTGTGCCCTCCATCTTATCTTTGCTACGAGGAAAGGCTATAGAAGTTATAAAAGCAGTGCTGGGGTTCGTGAAAGTTTTAGTGTCTTCCTTGCAAGCTAAGCATCTTCAGAGCATCATTTCTGATATTCTTACGGCGGCTTTACCTTGGTCGTCTGTCTCAAGGCATCATTTTAGATCCAAGGTCACAGTGATTTTGGAGATTCTCATTCGAAAATGTGGTTATGCTGCAATTGAGGGCTTTACTCCTGAAAATTACAAGGGTTTCATCAAACCTTTTGGGGAGAAACGCCTTAACAAGACCAGTTCCAAGGATGTTGGTGATGCCAATACAGATGTTGCAGATTTATCCACTAACGGGGTGAGGGATAAGCAACAGGACGGGCTGGACTCTCTTCCCAAGAAAAATGAATCGGGTCATCACAGGAAAAGGAAGTGGGAAAAACCTTCCGGTTTCATCAGGAGCAAAACTGATAATGCATCCGCTGAGGATGGTAGTAGATTTAAGATGAGAAAAAGAGCTGCGACCTCCAGTAGTAAGAGGAGTTCAATGGTGGACGGTCCAGGAGACGGTCGGAGAACAAAATTTTCAAGACGTGGGGATCCTAGAAAGGAAGGAAAGGGAGGGATCAAACACGGAAACAGACATCAGAAAGAAAGATTTGGAGTTCGTAGGCCTTTTAAAGCTTCAAAATCTAATCACAATAACTCCTCTAGTTGA

Protein sequence

MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTPENYKGFIKPFGEKRLNKTSSKDVGDANTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRKRKWEKPSGFIRSKTDNASAEDGSRFKMRKRAATSSSKRSSMVDGPGDGRRTKFSRRGDPRKEGKGGIKHGNRHQKERFGVRRPFKASKSNHNNSSS

Homology

[Close]

BLAST of Cucsat.G13222.T14 vs. ExPASy Swiss-Prot
Match: Q12754 (Ribosomal RNA-processing protein 12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RRP12 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-09
Identity = 51/165 (30.91%), Postives = 84/165 (50.91%), Query Frame = 0


Query: 1    MIMGYLSGASPHVKSGAISAVSVLIYE-----DADICLSIPDLVPSILSLLRGKAIEVIK 60
            +I   L G S H+ S +I+  + L++E     D+ I + I D +   L+     + E++K
Sbjct: 888  IISAGLIGESQHMVSSSITGYACLVFEFKNELDSGILMDIYDTIELYLT---SNSREIVK 947

Query: 61   AVLGFVKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAI 120
            + +GF KV V  L  + ++  + ++L   L WS     HF++KV  I+E LIR+ GY  I
Sbjct: 948  SAIGFTKVCVLGLPEELMRPKVPELLLKLLRWSHEHTGHFKAKVKHIIERLIRRFGYDYI 1007

Query: 121  EGFTPENYKGFIKPFGEKR-LNKTSSKDVGDANTDVADLSTNGVR 160
            E   PE  +  +    + R  NK   ++V    +DVA  +T G R
Sbjct: 1008 EANFPEEDRRLLTNIRKMRNRNKRKDEEVTTGVSDVA--ATKGSR 1047

[Close]

BLAST of Cucsat.G13222.T14 vs. ExPASy Swiss-Prot
Match: Q9C0X8 (Putative ribosomal RNA-processing protein 12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp12 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-07
Identity = 43/146 (29.45%), Postives = 74/146 (50.68%), Query Frame = 0


Query: 1   MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSL---LRGKAIEVIKAV 60
           +I   L+G+S H+ S  I A+S ++ E   + +S P LV  I +L   +     E+ KA 
Sbjct: 828 VISAGLAGSSTHMISATIIAISSIVME-YKVFISEPFLVQLISTLNLFITSSKREIAKAA 887

Query: 61  LGFVKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEG 120
           + F+K+ VSS   + ++ ++ +++   L WS   + + R KV  + E + RK G A IE 
Sbjct: 888 IDFIKISVSSFPVECIKPLLPELIPNLLAWSHEGKANLRVKVRHLFEKMGRKYGIAEIEP 947

Query: 121 FTPENYKGFIKPFGEKRLNKTSSKDV 144
           F P   K  I       + KT  +++
Sbjct: 948 FFPAEDKKLI-----TNIRKTQERNI 967

[Close]

BLAST of Cucsat.G13222.T14 vs. ExPASy Swiss-Prot
Match: Q5JTH9 (RRP12-like protein OS=Homo sapiens OX=9606 GN=RRP12 PE=1 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 1.3e-05
Identity = 32/111 (28.83%), Postives = 58/111 (52.25%), Query Frame = 0


Query: 15   SGAISAVSVLIYEDADI--CLSIPDLVPSILSLLRGKAIEVIKAVLGFVKVLVSSLQAKH 74
            S +I A++ L++E   +    ++  L+ ++  LL  +  +V+K+ LGF+KV V+ +   H
Sbjct: 918  SCSILALTHLLFEFKGLMGTSTVEQLLENVCLLLASRTRDVVKSALGFIKVAVTVMDVAH 977

Query: 75   LQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTPENY 124
            L   +  ++ A    S   R HFR K+  +    IRK G+  ++   PE Y
Sbjct: 978  LAKHVQLVMEAIGKLSDDMRRHFRMKLRNLFTKFIRKFGFELVKRLLPEEY 1028

[Close]

BLAST of Cucsat.G13222.T14 vs. ExPASy Swiss-Prot
Match: Q5ZKD5 (RRP12-like protein OS=Gallus gallus OX=9031 GN=RRP12 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 5.3e-04
Identity = 41/155 (26.45%), Postives = 71/155 (45.81%), Query Frame = 0


Query: 35   IPDLVPSILSLLRGKAIEVIKAVLGFVKVLV----SSLQAKHLQSIISDILTAALPWSSV 94
            +  L+ +I  LL  +  +V+KA LGF+KV++    ++L AKH+Q+    +L A    S  
Sbjct: 943  VEQLLQNICLLLGSRTRDVVKAALGFIKVVLLLVDTTLLAKHVQT----MLEAVGSLSDD 1002

Query: 95   SRHHFRSKVTVILEILIRKCGYAAIEGFTPENYKGFI----KPFGEKRLNKTSSKDVGDA 154
             R HFR K+  +    IRK G+  ++G  P  +   +    K     R  +   +   +A
Sbjct: 1003 MRRHFRMKLRNLFTKFIRKFGFELVQGLLPAEFHKVLVNIRKAEARSRKQRALRQAAAEA 1062

Query: 155  NTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRKR 182
              + A     G  D  ++ L    ++ E    R+R
Sbjct: 1063 EEEEAPAQPKG--DSMEEILADSEEEEEEEEERRR 1091

[Close]

BLAST of Cucsat.G13222.T14 vs. NCBI nr
Match: XP_004136785.1 (RRP12-like protein [Cucumis sativus] >KGN59491.1 hypothetical protein Csa_001385 [Cucumis sativus])

HSP 1 Score: 517 bits (1332), Expect = 1.15e-172
Identity = 275/276 (99.64%), Postives = 275/276 (99.64%), Query Frame = 0


Query: 1    MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSLLRGKAIEVIKAVLGF 60
            MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSLLRGKAIEVIKAVLGF
Sbjct: 874  MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSLLRGKAIEVIKAVLGF 933

Query: 61   VKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 120
            VKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP
Sbjct: 934  VKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 993

Query: 121  ENYKGFIKPFGEKRLNKTSSKDVGDANTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRK 180
            ENYKGFIKPFGEKRLNKTSSKDVGDANTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRK
Sbjct: 994  ENYKGFIKPFGEKRLNKTSSKDVGDANTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRK 1053

Query: 181  RKWEKPSGFIRSKTDNASAEDGSRFKMRKRAATSSSKRSSMVDGPGDGRRTKFSRRGDPR 240
            RKWEKPSGFIRSKTDNASAEDGSRFKMRKRAATSSSKRSSMVDG GDGRRTKFSRRGDPR
Sbjct: 1054 RKWEKPSGFIRSKTDNASAEDGSRFKMRKRAATSSSKRSSMVDGRGDGRRTKFSRRGDPR 1113

Query: 241  KEGKGGIKHGNRHQKERFGVRRPFKASKSNHNNSSS 276
            KEGKGGIKHGNRHQKERFGVRRPFKASKSNHNNSSS
Sbjct: 1114 KEGKGGIKHGNRHQKERFGVRRPFKASKSNHNNSSS 1149

[Close]

BLAST of Cucsat.G13222.T14 vs. NCBI nr
Match: XP_008443313.1 (PREDICTED: RRP12-like protein [Cucumis melo])

HSP 1 Score: 478 bits (1229), Expect = 2.61e-157
Identity = 253/276 (91.67%), Postives = 262/276 (94.93%), Query Frame = 0


Query: 1    MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSLLRGKAIEVIKAVLGF 60
            MI+GYLSGASPHVKSGAISA+SVL+Y+DADICLSIPDLVPS+LSLLRGKAIEVIKA LGF
Sbjct: 878  MILGYLSGASPHVKSGAISALSVLVYDDADICLSIPDLVPSLLSLLRGKAIEVIKAALGF 937

Query: 61   VKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 120
            VKVLVSSLQAKHLQSI SDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP
Sbjct: 938  VKVLVSSLQAKHLQSITSDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 997

Query: 121  ENYKGFIKPFGEKRLNKTSSKDVGDANTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRK 180
            +NYKGFIKP GEKR NKTS KDVGDANTDVADLSTN  RDKQQDGLDSLPKK+ESGHHRK
Sbjct: 998  DNYKGFIKPLGEKRHNKTSFKDVGDANTDVADLSTNRARDKQQDGLDSLPKKSESGHHRK 1057

Query: 181  RKWEKPSGFIRSKTDNASAEDGSRFKMRKRAATSSSKRSSMVDGPGDGRRTKFSRRGDPR 240
            RKWEKPSGFIRSKTDN SAEDG RFKMRKRAATS+SK SSMVDG GDG RTKFSRRGDPR
Sbjct: 1058 RKWEKPSGFIRSKTDNTSAEDGGRFKMRKRAATSNSKTSSMVDGTGDGCRTKFSRRGDPR 1117

Query: 241  KEGKGGIKHGNRHQKERFGVRRPFKASKSNHNNSSS 276
            K+GK GIKHGNRHQKERFGVRR FKASKSNHNNSSS
Sbjct: 1118 KDGKRGIKHGNRHQKERFGVRRTFKASKSNHNNSSS 1153

[Close]

BLAST of Cucsat.G13222.T14 vs. NCBI nr
Match: TYK25566.1 (RRP12-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 452 bits (1162), Expect = 1.31e-156
Identity = 239/265 (90.19%), Postives = 250/265 (94.34%), Query Frame = 0


Query: 1   MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSLLRGKAIEVIKAVLGF 60
           MI+GYLSGASPHVKSGAISA+SVL+Y+DADICLSIPDLVPS+LSLLRGKAIEVIKA LGF
Sbjct: 108 MILGYLSGASPHVKSGAISALSVLVYDDADICLSIPDLVPSLLSLLRGKAIEVIKAALGF 167

Query: 61  VKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 120
           VKVLVSSLQAKHLQSI SDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP
Sbjct: 168 VKVLVSSLQAKHLQSITSDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 227

Query: 121 ENYKGFIKPFGEKRLNKTSSKDVGDANTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRK 180
           +NYKGFIKP GEKR NKTS KDVGDANTDVADLSTN  RDKQQDGLDSLPKK+ESGHHRK
Sbjct: 228 DNYKGFIKPLGEKRHNKTSFKDVGDANTDVADLSTNRARDKQQDGLDSLPKKSESGHHRK 287

Query: 181 RKWEKPSGFIRSKTDNASAEDGSRFKMRKRAATSSSKRSSMVDGPGDGRRTKFSRRGDPR 240
           RKWEKPSGFIRSKTDN SAEDG RFKMRKRAATS+SK SSMVDG GDG RTKFSRRGDPR
Sbjct: 288 RKWEKPSGFIRSKTDNTSAEDGGRFKMRKRAATSNSKTSSMVDGTGDGCRTKFSRRGDPR 347

Query: 241 KEGKGGIKHGNRHQKERFGV-RRPF 264
           K+GK GIKHGNRHQKERFG  ++PF
Sbjct: 348 KDGKRGIKHGNRHQKERFGEGKQPF 372

[Close]

BLAST of Cucsat.G13222.T14 vs. NCBI nr
Match: KAA0053835.1 (RRP12-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 452 bits (1162), Expect = 2.75e-147
Identity = 239/265 (90.19%), Postives = 250/265 (94.34%), Query Frame = 0


Query: 1    MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSLLRGKAIEVIKAVLGF 60
            MI+GYLSGASPHVKSGAISA+SVL+Y+DADICLSIPDLVPS+LSLLRGKAIEVIKA LGF
Sbjct: 872  MILGYLSGASPHVKSGAISALSVLVYDDADICLSIPDLVPSLLSLLRGKAIEVIKAALGF 931

Query: 61   VKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 120
            VKVLVSSLQAKHLQSI SDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP
Sbjct: 932  VKVLVSSLQAKHLQSITSDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 991

Query: 121  ENYKGFIKPFGEKRLNKTSSKDVGDANTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRK 180
            +NYKGFIKP GEKR NKTS KDVGDANTDVADLSTN  RDKQQDGLDSLPKK+ESGHHRK
Sbjct: 992  DNYKGFIKPLGEKRHNKTSFKDVGDANTDVADLSTNRARDKQQDGLDSLPKKSESGHHRK 1051

Query: 181  RKWEKPSGFIRSKTDNASAEDGSRFKMRKRAATSSSKRSSMVDGPGDGRRTKFSRRGDPR 240
            RKWEKPSGFIRSKTDN SAEDG RFKMRKRAATS+SK SSMVDG GDG RTKFSRRGDPR
Sbjct: 1052 RKWEKPSGFIRSKTDNTSAEDGGRFKMRKRAATSNSKTSSMVDGTGDGCRTKFSRRGDPR 1111

Query: 241  KEGKGGIKHGNRHQKERFGV-RRPF 264
            K+GK GIKHGNRHQKERFG  ++PF
Sbjct: 1112 KDGKRGIKHGNRHQKERFGEGKQPF 1136

[Close]

BLAST of Cucsat.G13222.T14 vs. NCBI nr
Match: XP_038905709.1 (RRP12-like protein [Benincasa hispida])

HSP 1 Score: 439 bits (1129), Expect = 1.38e-142
Identity = 235/276 (85.14%), Postives = 249/276 (90.22%), Query Frame = 0


Query: 1    MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSLLRGKAIEVIKAVLGF 60
            MI+GYLSGASPHVKSGAISA+SVL+YEDADICLSIPDLVPS+LSLLRGKAIEVIKAVLGF
Sbjct: 869  MILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGF 928

Query: 61   VKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 120
            VKVLVSSLQAK LQSIISDILTA LPWSSVSRHHFRSKVTVILEILIRKCGYAAIEG +P
Sbjct: 929  VKVLVSSLQAKLLQSIISDILTATLPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGVSP 988

Query: 121  ENYKGFIKPFGEKRLNKTSSKDVGDANTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRK 180
            E YK FIKP GEKR NKT+SKD GDAN DVAD STNG  DKQQDGLDS  KK+ESGHHRK
Sbjct: 989  EKYKAFIKPLGEKRHNKTNSKDAGDANADVADSSTNGATDKQQDGLDSRSKKSESGHHRK 1048

Query: 181  RKWEKPSGFIRSKTDNASAEDGSRFKMRKRAATSSSKRSSMVDGPGDGRRTKFSRRGDPR 240
            RKWEKPSG I SKTD+   EDG R KMRKR ATS++KR+ MVDG GDGRRTKFSRRG PR
Sbjct: 1049 RKWEKPSGLIGSKTDDTFTEDGGRSKMRKRVATSNNKRNLMVDGLGDGRRTKFSRRGAPR 1108

Query: 241  KEGKGGIKHGNRHQKERFGVRRPFKASKSNHNNSSS 276
            K+GK GI+HGN+HQKERFGVRRPFKASKSNH NSSS
Sbjct: 1109 KDGKRGIEHGNKHQKERFGVRRPFKASKSNHKNSSS 1144

[Close]

BLAST of Cucsat.G13222.T14 vs. ExPASy TrEMBL
Match: A0A0A0LHL3 (NUC173 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G822420 PE=3 SV=1)

HSP 1 Score: 517 bits (1332), Expect = 5.55e-173
Identity = 275/276 (99.64%), Postives = 275/276 (99.64%), Query Frame = 0


Query: 1    MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSLLRGKAIEVIKAVLGF 60
            MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSLLRGKAIEVIKAVLGF
Sbjct: 874  MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSLLRGKAIEVIKAVLGF 933

Query: 61   VKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 120
            VKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP
Sbjct: 934  VKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 993

Query: 121  ENYKGFIKPFGEKRLNKTSSKDVGDANTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRK 180
            ENYKGFIKPFGEKRLNKTSSKDVGDANTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRK
Sbjct: 994  ENYKGFIKPFGEKRLNKTSSKDVGDANTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRK 1053

Query: 181  RKWEKPSGFIRSKTDNASAEDGSRFKMRKRAATSSSKRSSMVDGPGDGRRTKFSRRGDPR 240
            RKWEKPSGFIRSKTDNASAEDGSRFKMRKRAATSSSKRSSMVDG GDGRRTKFSRRGDPR
Sbjct: 1054 RKWEKPSGFIRSKTDNASAEDGSRFKMRKRAATSSSKRSSMVDGRGDGRRTKFSRRGDPR 1113

Query: 241  KEGKGGIKHGNRHQKERFGVRRPFKASKSNHNNSSS 276
            KEGKGGIKHGNRHQKERFGVRRPFKASKSNHNNSSS
Sbjct: 1114 KEGKGGIKHGNRHQKERFGVRRPFKASKSNHNNSSS 1149

[Close]

BLAST of Cucsat.G13222.T14 vs. ExPASy TrEMBL
Match: A0A1S3B7P4 (RRP12-like protein OS=Cucumis melo OX=3656 GN=LOC103486929 PE=3 SV=1)

HSP 1 Score: 478 bits (1229), Expect = 1.26e-157
Identity = 253/276 (91.67%), Postives = 262/276 (94.93%), Query Frame = 0


Query: 1    MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSLLRGKAIEVIKAVLGF 60
            MI+GYLSGASPHVKSGAISA+SVL+Y+DADICLSIPDLVPS+LSLLRGKAIEVIKA LGF
Sbjct: 878  MILGYLSGASPHVKSGAISALSVLVYDDADICLSIPDLVPSLLSLLRGKAIEVIKAALGF 937

Query: 61   VKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 120
            VKVLVSSLQAKHLQSI SDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP
Sbjct: 938  VKVLVSSLQAKHLQSITSDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 997

Query: 121  ENYKGFIKPFGEKRLNKTSSKDVGDANTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRK 180
            +NYKGFIKP GEKR NKTS KDVGDANTDVADLSTN  RDKQQDGLDSLPKK+ESGHHRK
Sbjct: 998  DNYKGFIKPLGEKRHNKTSFKDVGDANTDVADLSTNRARDKQQDGLDSLPKKSESGHHRK 1057

Query: 181  RKWEKPSGFIRSKTDNASAEDGSRFKMRKRAATSSSKRSSMVDGPGDGRRTKFSRRGDPR 240
            RKWEKPSGFIRSKTDN SAEDG RFKMRKRAATS+SK SSMVDG GDG RTKFSRRGDPR
Sbjct: 1058 RKWEKPSGFIRSKTDNTSAEDGGRFKMRKRAATSNSKTSSMVDGTGDGCRTKFSRRGDPR 1117

Query: 241  KEGKGGIKHGNRHQKERFGVRRPFKASKSNHNNSSS 276
            K+GK GIKHGNRHQKERFGVRR FKASKSNHNNSSS
Sbjct: 1118 KDGKRGIKHGNRHQKERFGVRRTFKASKSNHNNSSS 1153

[Close]

BLAST of Cucsat.G13222.T14 vs. ExPASy TrEMBL
Match: A0A5D3DPH3 (RRP12-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007200 PE=4 SV=1)

HSP 1 Score: 452 bits (1162), Expect = 6.33e-157
Identity = 239/265 (90.19%), Postives = 250/265 (94.34%), Query Frame = 0


Query: 1   MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSLLRGKAIEVIKAVLGF 60
           MI+GYLSGASPHVKSGAISA+SVL+Y+DADICLSIPDLVPS+LSLLRGKAIEVIKA LGF
Sbjct: 108 MILGYLSGASPHVKSGAISALSVLVYDDADICLSIPDLVPSLLSLLRGKAIEVIKAALGF 167

Query: 61  VKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 120
           VKVLVSSLQAKHLQSI SDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP
Sbjct: 168 VKVLVSSLQAKHLQSITSDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 227

Query: 121 ENYKGFIKPFGEKRLNKTSSKDVGDANTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRK 180
           +NYKGFIKP GEKR NKTS KDVGDANTDVADLSTN  RDKQQDGLDSLPKK+ESGHHRK
Sbjct: 228 DNYKGFIKPLGEKRHNKTSFKDVGDANTDVADLSTNRARDKQQDGLDSLPKKSESGHHRK 287

Query: 181 RKWEKPSGFIRSKTDNASAEDGSRFKMRKRAATSSSKRSSMVDGPGDGRRTKFSRRGDPR 240
           RKWEKPSGFIRSKTDN SAEDG RFKMRKRAATS+SK SSMVDG GDG RTKFSRRGDPR
Sbjct: 288 RKWEKPSGFIRSKTDNTSAEDGGRFKMRKRAATSNSKTSSMVDGTGDGCRTKFSRRGDPR 347

Query: 241 KEGKGGIKHGNRHQKERFGV-RRPF 264
           K+GK GIKHGNRHQKERFG  ++PF
Sbjct: 348 KDGKRGIKHGNRHQKERFGEGKQPF 372

[Close]

BLAST of Cucsat.G13222.T14 vs. ExPASy TrEMBL
Match: A0A5A7UJH3 (RRP12-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002250 PE=3 SV=1)

HSP 1 Score: 452 bits (1162), Expect = 1.33e-147
Identity = 239/265 (90.19%), Postives = 250/265 (94.34%), Query Frame = 0


Query: 1    MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSLLRGKAIEVIKAVLGF 60
            MI+GYLSGASPHVKSGAISA+SVL+Y+DADICLSIPDLVPS+LSLLRGKAIEVIKA LGF
Sbjct: 872  MILGYLSGASPHVKSGAISALSVLVYDDADICLSIPDLVPSLLSLLRGKAIEVIKAALGF 931

Query: 61   VKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 120
            VKVLVSSLQAKHLQSI SDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP
Sbjct: 932  VKVLVSSLQAKHLQSITSDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 991

Query: 121  ENYKGFIKPFGEKRLNKTSSKDVGDANTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRK 180
            +NYKGFIKP GEKR NKTS KDVGDANTDVADLSTN  RDKQQDGLDSLPKK+ESGHHRK
Sbjct: 992  DNYKGFIKPLGEKRHNKTSFKDVGDANTDVADLSTNRARDKQQDGLDSLPKKSESGHHRK 1051

Query: 181  RKWEKPSGFIRSKTDNASAEDGSRFKMRKRAATSSSKRSSMVDGPGDGRRTKFSRRGDPR 240
            RKWEKPSGFIRSKTDN SAEDG RFKMRKRAATS+SK SSMVDG GDG RTKFSRRGDPR
Sbjct: 1052 RKWEKPSGFIRSKTDNTSAEDGGRFKMRKRAATSNSKTSSMVDGTGDGCRTKFSRRGDPR 1111

Query: 241  KEGKGGIKHGNRHQKERFGV-RRPF 264
            K+GK GIKHGNRHQKERFG  ++PF
Sbjct: 1112 KDGKRGIKHGNRHQKERFGEGKQPF 1136

[Close]

BLAST of Cucsat.G13222.T14 vs. ExPASy TrEMBL
Match: A0A6J1FK07 (RRP12-like protein OS=Cucurbita moschata OX=3662 GN=LOC111444726 PE=3 SV=1)

HSP 1 Score: 369 bits (947), Expect = 3.42e-116
Identity = 207/274 (75.55%), Postives = 226/274 (82.48%), Query Frame = 0


Query: 1    MIMGYLSGASPHVKSGAISAVSVLIYEDADICLSIPDLVPSILSLLRGKAIEVIKAVLGF 60
            MI+GYLSGASPHVKSGAISA+SVL+YEDADICLSIPDLVPS+LSLL+GKAIEVIKAVLGF
Sbjct: 875  MILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLQGKAIEVIKAVLGF 934

Query: 61   VKVLVSSLQAKHLQSIISDILTAALPWSSVSRHHFRSKVTVILEILIRKCGYAAIEGFTP 120
            VKVLVSSLQAK LQSI+SDIL AALPWSSVSRHHFRSKVTVILEIL+RKCGYAAIEG +P
Sbjct: 935  VKVLVSSLQAKDLQSIVSDILLAALPWSSVSRHHFRSKVTVILEILLRKCGYAAIEGVSP 994

Query: 121  ENYKGFIKPFGEKRLNKTSSKDVGDANTDVADLSTNGVRDKQQDGLDSLPKKNESGHHRK 180
            + YKGFIK   EKR NKTSSKD  DANTDVAD  +NGVRDKQ DGL++ PKKN +G +RK
Sbjct: 995  DKYKGFIKSLFEKRHNKTSSKDAEDANTDVADSPSNGVRDKQHDGLETAPKKNVAGQYRK 1054

Query: 181  RKWEKPSGFIRSKTDNASAEDGSRFKMRKRAATSSSKRSSMVDGPGDGRRTKFSRRGDPR 240
            RKWEK SGFI  K D    EDG R KM KRAA SSSKRSS +DG GD RR  FSR   PR
Sbjct: 1055 RKWEKSSGFIGRKNDIVFTEDGDRSKMIKRAAISSSKRSSTMDGFGDSRRADFSRHDAPR 1114

Query: 241  KEGKGGIKHGNRHQKERFGVRRPFKASKSNHNNS 274
            K  + G K G +HQKERFG  +P KASK  H +S
Sbjct: 1115 KAQQRGNKSGKKHQKERFG--KPVKASKFYHKSS 1146

The following BLAST results are available for this feature:

BLAST of Cucsat.G13222.T14 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q12754	1.4e-09	30.91	Ribosomal RNA-processing protein 12 OS=Saccharomyces cerevisiae (strain ATCC 204...	[more]
Q9C0X8	3.0e-07	29.45	Putative ribosomal RNA-processing protein 12 OS=Schizosaccharomyces pombe (strai...	[more]
Q5JTH9	1.3e-05	28.83	RRP12-like protein OS=Homo sapiens OX=9606 GN=RRP12 PE=1 SV=2	[more]
Q5ZKD5	5.3e-04	26.45	RRP12-like protein OS=Gallus gallus OX=9031 GN=RRP12 PE=2 SV=1	[more]

BLAST of Cucsat.G13222.T14 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136785.1	1.15e-172	99.64	RRP12-like protein [Cucumis sativus] >KGN59491.1 hypothetical protein Csa_001385...	[more]
XP_008443313.1	2.61e-157	91.67	PREDICTED: RRP12-like protein [Cucumis melo]	[more]
TYK25566.1	1.31e-156	90.19	RRP12-like protein [Cucumis melo var. makuwa]	[more]
KAA0053835.1	2.75e-147	90.19	RRP12-like protein [Cucumis melo var. makuwa]	[more]
XP_038905709.1	1.38e-142	85.14	RRP12-like protein [Benincasa hispida]	[more]

BLAST of Cucsat.G13222.T14 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHL3	5.55e-173	99.64	NUC173 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G822420 PE=3...	[more]
A0A1S3B7P4	1.26e-157	91.67	RRP12-like protein OS=Cucumis melo OX=3656 GN=LOC103486929 PE=3 SV=1	[more]
A0A5D3DPH3	6.33e-157	90.19	RRP12-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G0...	[more]
A0A5A7UJH3	1.33e-147	90.19	RRP12-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G0...	[more]
A0A6J1FK07	3.42e-116	75.55	RRP12-like protein OS=Cucurbita moschata OX=3662 GN=LOC111444726 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..276
None	No IPR available	PANTHER	PTHR21576:SF81	ARM REPEAT SUPERFAMILY PROTEIN	coord: 9..242
None	No IPR available	PANTHER	PTHR21576	UNCHARACTERIZED NODULIN-LIKE PROTEIN	coord: 9..242
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 2..114

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G13222	Cucsat.G13222	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13222.T14.E1	Cucsat.G13222.T14.E1	exon
Cucsat.G13222.T14.E2	Cucsat.G13222.T14.E2	exon
Cucsat.G13222.T14.E3	Cucsat.G13222.T14.E3	exon
Cucsat.G13222.T14.E4	Cucsat.G13222.T14.E4	exon
Cucsat.G13222.T14.E5	Cucsat.G13222.T14.E5	exon
Cucsat.G13222.T14.E6	Cucsat.G13222.T14.E6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13222.T14.C1	Cucsat.G13222.T14.C1	CDS
Cucsat.G13222.T14.C2	Cucsat.G13222.T14.C2	CDS
Cucsat.G13222.T14.C3	Cucsat.G13222.T14.C3	CDS
Cucsat.G13222.T14.C4	Cucsat.G13222.T14.C4	CDS
Cucsat.G13222.T14.C5	Cucsat.G13222.T14.C5	CDS
Cucsat.G13222.T14.C6	Cucsat.G13222.T14.C6	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13222.T14	Cucsat.G13222.T14-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051131	chaperone-mediated protein complex assembly
biological_process	GO:0006457	protein folding
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0051879	Hsp90 protein binding