Cucsat.G13124.T13 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G13124.T13
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Nudix hydrolase 26
Location	ctg1838: 561053 .. 564705 (+)
RNA-Seq Expression	Cucsat.G13124.T13
Synteny	Cucsat.G13124.T13

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATATAATAATAATAATAATAATATGAATATTGAAAAAGTAGTATTGTTCCAGTCCAAGGTCGTAGAAACTGCACAGAACGTGATCCTTTTTTCCTTACGTTTCTCACCAAAACAAAAAAAGAAGAAGAAGAAAGAAAAGAACCTCTTTCCTCCTATTGGTCAAAATAGTCTCACAAATTTAAAAGAAAAAAAGAAAATTAGGTGGATGATGGACCCACCTACTTGGGTATGATCAACGGCTGCTGCGATCCTACGGATCAAAATGTAGCCAATGGGAAGGACTTCGGTACACTCTTCTTACGATGTACTCGACTTCACGGGAACAGTCCCCGCACCATTCCTTCTCCTTCTCAAACCTACTCTGTTATTCACACGCACCGCACAATGCACATAACATCAATTCTAAAACAACCTCAATTCGGGTCGGATTATTACTCCGATTCTTTTACGGGTCGGGCTATTGGACCCGCGTGTGACCGGAATCCCGCCGTCACCGCGTCGTTCGCGCAGCAGTGAAATCCCGCCGCCACCCCTCTTTCTTTTGCACTCAAGCAATCTCCGCAGATTCTCCTTTCCGATCTCCCACTCTTGTTCCGCCCCCCATCTCCGCCATCCCCCATCCTCAGGTTGCTCATCTGTATGCTCATTAAATACTTCTCCTTCTCCAATTGCAGCTTCCTAATTCGGTCTTCGTATTCGTATCGATCCATCACCGGCGAGATGAAGCCAGCCAGCAATTCGTTTTCGATGCCTCCGTTCCGTCTCAACAGCATCACATTCTCTGGTGGATTCTTCTTCTTTAATAGATTCGTCTTTGTTTGCGTCTTCGTCGCCGACGAGAAGTAATAATCCTCTTCGTTGTCGTGGATGACCTTTCGCCTCCTCTCGCGTCTTGACCGTTTCAAAACCACAAGAAAGAAACTATTCTTCTCGCCGGAGATTGCGCCAAAATTGACCTTCCCAGTAATAGGAATTCTCCGCCGAATCTTCGTGGAGGAATCCAGAGAGATCTTATACTCCGCGAGATAAACCGTGAACTGGTGCGAAGAGATTCCAATCATCTTGCTCAAACTGGACTGGAAATTCTTGAACTCCGTCGAAGAAGAAACGATAACGGAACCGATGTTGGTATCACGTTCGCCATCGTGGAAAACGATCGGGAACGAAACGCCCTCGACGGTCTCCGCCATCGCCTCTACAAATAAAAGAAAAACTCTTCAATTAAGGAACAGAAGGAAACTTTCATAAAAAAAGAAAGAAAGAAAGAAGAGGGTTTTACGGAGAAATCTTGAAGAAGACTATGGAAGGTTTTTACTTTAACAAGTGGGTTTTAGGTTTTTATGGTAACAACCTCAAGGCGGTGAGGGTATTTTCGGAATAAGATATTAGATTTATGGCCTTCGTACCTAAGGAAGCCAAACGAAGAACTAAGAAGGAAACTTCAAAACGTTTATATAGAAGGAAAGAGACTTGGGAATCAAGTAAAATATAAACGACATCGTAATAGTCAGCTTGGCTGTGTTTAGACCAAAATGCCCCCGTCTTCTAATTAAATCCTCGTCAACGCATTTTTGGAAGGGGTCGTCTTCTTCTTCATCTACCATCCTCCATCCATGGAGTTTCCTCCAGAAGGTTACAGAAGAGGCGTTGGGATTTGCCTTCTTAATTCTTCTGGAAAAGTAATTTCGCTTCGTTGCCTTCTTCTTTCGCTCTTATCTTGTTTTCTTCTGATCATAACCAATTTTTCTCTCTCCAATTCATCTTTTGCAGATTTTTGCAGCTTCGAGACTGAACGGGCATGAAATCTGGGAAATGCCTCAGGTAGTTTCTATTCCGTTGTATTTTCAGCTTTATTCATTGGGAAACAGGAAAAGTACTATCTCTCTGCTTTTCTTTAAGTACTTCTCTCGCTCTCGCTTTATTCTGTGCGAATTAGGGCACATATTTATAGGTTCCATCTCTGATTTCCTTGTGGGAATATCCCAAAATTCTTTCTTGAGATCCCTTTTTGAAGCAATTCGAGGATCAGCTGAAAATGAGAATGGGATTTTTGAGTAATCTGTACCCATTTCTCTCGATTTTTCTCTTTGAACGTAGTGTTGGTGGAATTCTTGCAATGGTGCTGCGGGTTCTGGTTCTTTCCATTAGAGAATTGTATTAGCTTTCAGAAAGCTGTTTATTATGGTTCTGATGGAAACTTTGGTGGGATTCTCATCTTTTCAATCATGAGACGGAGAGGTGTTTGATATTATGTCTTTTATTTCTTTTACAATTGGAGTATCTACATGAGTTAGCTTATATACTATTTAACTAGGAAACTCATAGTTGACTTCAAATGATGGATTGATCCAGTAACTTCAAAATCATATAGATCTGTATTGCCTTGTGGAACTTGAAGCTTGTGTTCCCTGACACTGATTTTCCATCATACAGGGTGGTGTAAATGAAGGGGAAGATCTCAAAACTGCAGCCAAGAGAGAACTCATGGAAGAAACAGGAGTAGTTTCTGCAGAAATTATAGCTGAGGTATGCATTTTGAGATGGTTACAGTTATATAACTTTGCAGCTTCCATATCTCGTCTTTAGTACACTGTATGATGAACTTTAGAAAAATGAATTCTGGCTTCATTTGAATTGGGACTGATTCGATCCATGGTTAAATATAGCTACCCTACTGGCTTTCTTACGATTTCTCTCCCGAAGTAAGCATCAGACACATCAAACACTGGGGAGTCATATACAAAGGCCAGACCCATAAGTGGTATTGCCTCCATAAAATCCGACTCCTATAACCTTTTCTTGTTAAGGAACTTTCTTTTTTGGAAAGCATCTCCACATTTATTTTTTTTGCTTTCTTTGCATGATCCTATATTTTTTTAATCCTCAAAGAACTGTACATAGTTGGTAACTTTTTCTTTCTTTCAGCTTCAAAGAATTGATCAACGTATATGGATTATATTATTTCCCCTTCAAGCTTCCGCGTTCAATTGATCAATCATAAAGCTCGTGAACAGGTTTCTCATGAAGTTTACCGGAAAAGACGAAGAGATAAATCTTCTAGGTGATGGAACAGAAAGGCAAGAGTTTGGGAAATGGTCATGGATGTCAATTGAACAGCTACTGAACCAAGTGTGTAAACAACTTCTACCTAATTCATTCTTTCTCCTGCAACAATTTTTCATAAACCTTCACAATAATTTGAACAGGCTAAGAAATCCAGGAAGCCTGTTTACGAACAAGTGATGAAGGAGTTTGGTAACATCATACTTGGAATTGTGGGTGACGATCTTTCTCCCACGCAGAGTGAAACTCAATTGGTTATTTGATGGGTTTCGAATATATTTATCGAGAGTACCACGAACATATACCATACGAATCACAGGTTCATATAAGATGTTATGTAGTCATATCTAAGTTTGATTTTTAAAATAAGAGATGCCTTTATTTAGAGATAAGGCAGATATGTTTGATCCTCTTGGAACTTGAAGTGGTGGATTAATGAAATCTGAGGCCAAGATATTGGAATCAGAACCTTCACTAAATTGTGCAGCTGTAAAAGGATTTAAGTGTCCAAATAAGAGATAAAGGGATTTTGATTTATAGAAAGGAATCAAAACGTGGGATTCACTTTTAAATTTCGGAATTATTCTCT

Coding sequence (CDS)

ATGGAGTTTCCTCCAGAAGGTTACAGAAGAGGCGTTGGGATTTGCCTTCTTAATTCTTCTGGAAAAATTTTTGCAGCTTCGAGACTGAACGGGCATGAAATCTGGGAAATGCCTCAGGTAGTTTCTATTCCGTTGTATTTTCAGCTTTATTCATTGGGAAACAGGAAAAGTACTATCTCTCTGCTTTTCTTTAAGTACTTCTCTCGCTCTCGCTTTATTCTGTGCGAATTAGGGCACATATTTATAGGTTCCATCTCTGATTTCCTTGTGGGAATATCCCAAAATTCTTTCTTGAGATCCCTTTTTGAAGCAATTCGAGGATCAGCTGAAAATGAGAATGGGATTTTTGAGTAA

Protein sequence

MEFPPEGYRRGVGICLLNSSGKIFAASRLNGHEIWEMPQVVSIPLYFQLYSLGNRKSTISLLFFKYFSRSRFILCELGHIFIGSISDFLVGISQNSFLRSLFEAIRGSAENENGIFE

Homology

[Close]

BLAST of Cucsat.G13124.T13 vs. ExPASy Swiss-Prot
Match: Q9CAF2 (Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NUDT26 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRLNGHEIWEMPQ 40
          ME PPEGYRR VG+CL+NSS KIF ASRL+    W+MPQ
Sbjct: 56 MESPPEGYRRNVGVCLMNSSKKIFTASRLDIPSAWQMPQ 94

[Close]

BLAST of Cucsat.G13124.T13 vs. ExPASy Swiss-Prot
Match: Q9C6Z2 (Nudix hydrolase 25 OS=Arabidopsis thaliana OX=3702 GN=NUDT25 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.1e-06
Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRLNGHEIWEMPQ 40
          ME  P GYR  VG+CL+NS   +F ASRLN    W+MPQ
Sbjct: 1  MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQ 39

[Close]

BLAST of Cucsat.G13124.T13 vs. ExPASy Swiss-Prot
Match: Q9FNH4 (Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NUDT27 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.0e-06
Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRLNGHEIWEMPQ 40
          +E PP GYR+ VGICL++   KIF AS+++  + W+MPQ
Sbjct: 55 VESPPVGYRKNVGICLVSPCRKIFTASKIHIPDTWQMPQ 93

[Close]

BLAST of Cucsat.G13124.T13 vs. ExPASy Swiss-Prot
Match: Q2RV14 (RNA pyrophosphohydrolase OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=rppH PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-04
Identity = 18/32 (56.25%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 8  YRRGVGICLLNSSGKIFAASRLNGHEIWEMPQ 40
          YR+GVGI L+N+ G++F A RL+  E W+MPQ
Sbjct: 14 YRQGVGIMLINARGQVFVARRLDSPEAWQMPQ 45

[Close]

BLAST of Cucsat.G13124.T13 vs. NCBI nr
Match: KGN59203.1 (hypothetical protein Csa_001538 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.33e-18
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRLNGHEIWEMPQ 39
          MEFPPEGYRRGVGICLLNSSGKIFAASR NGHEIWEMPQ
Sbjct: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQ 39

[Close]

BLAST of Cucsat.G13124.T13 vs. NCBI nr
Match: XP_008443595.2 (PREDICTED: nudix hydrolase 26, chloroplastic-like [Cucumis melo] >TYK25315.1 nudix hydrolase 26 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.60e-18
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRLNGHEIWEMPQ 39
          MEFPPEGYRRGVGICL NSSGKIFAASRLNGHEIWEMPQ
Sbjct: 1  MEFPPEGYRRGVGICLFNSSGKIFAASRLNGHEIWEMPQ 39

[Close]

BLAST of Cucsat.G13124.T13 vs. NCBI nr
Match: KAA0043817.1 (nudix hydrolase 26 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.71e-18
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRLNGHEIWEMPQ 39
          MEFPPEGYRRGVGICL NSSGKIFAASRLNGHEIWEMPQ
Sbjct: 1  MEFPPEGYRRGVGICLFNSSGKIFAASRLNGHEIWEMPQ 39

[Close]

BLAST of Cucsat.G13124.T13 vs. NCBI nr
Match: XP_031739122.1 (nudix hydrolase 26, chloroplastic [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 4.93e-18
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRLNGHEIWEMPQ 39
          MEFPPEGYRRGVGICLLNSSGKIFAASR NGHEIWEMPQ
Sbjct: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQ 39

[Close]

BLAST of Cucsat.G13124.T13 vs. NCBI nr
Match: XP_038904841.1 (nudix hydrolase 26, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 8.53e-16
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRLNGHEIWEMPQ 39
          MEFPPEGYRRGVGICL NSSGKIFAASRLN  EIWEMPQ
Sbjct: 1  MEFPPEGYRRGVGICLFNSSGKIFAASRLNRPEIWEMPQ 39

[Close]

BLAST of Cucsat.G13124.T13 vs. ExPASy TrEMBL
Match: A0A0A0LBJ8 (Nudix hydrolase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G781040 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.46e-19
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRLNGHEIWEMPQ 39
          MEFPPEGYRRGVGICLLNSSGKIFAASR NGHEIWEMPQ
Sbjct: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQ 39

[Close]

BLAST of Cucsat.G13124.T13 vs. ExPASy TrEMBL
Match: A0A5D3DP41 (Nudix hydrolase 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004530 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.74e-19
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRLNGHEIWEMPQ 39
          MEFPPEGYRRGVGICL NSSGKIFAASRLNGHEIWEMPQ
Sbjct: 1  MEFPPEGYRRGVGICLFNSSGKIFAASRLNGHEIWEMPQ 39

[Close]

BLAST of Cucsat.G13124.T13 vs. ExPASy TrEMBL
Match: A0A1S3B8G6 (nudix hydrolase 26, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487152 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.74e-19
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRLNGHEIWEMPQ 39
          MEFPPEGYRRGVGICL NSSGKIFAASRLNGHEIWEMPQ
Sbjct: 1  MEFPPEGYRRGVGICLFNSSGKIFAASRLNGHEIWEMPQ 39

[Close]

BLAST of Cucsat.G13124.T13 vs. ExPASy TrEMBL
Match: A0A5A7TPT1 (Nudix hydrolase 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001500 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 8.30e-19
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRLNGHEIWEMPQ 39
          MEFPPEGYRRGVGICL NSSGKIFAASRLNGHEIWEMPQ
Sbjct: 1  MEFPPEGYRRGVGICLFNSSGKIFAASRLNGHEIWEMPQ 39

[Close]

BLAST of Cucsat.G13124.T13 vs. ExPASy TrEMBL
Match: A0A6J1DB53 (nudix hydrolase 26, chloroplastic-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111019369 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.64e-15
Identity = 35/39 (89.74%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 1  MEFPPEGYRRGVGICLLNSSGKIFAASRLNGHEIWEMPQ 39
          MEFPPEGYRR VGICL NSSGKIFAASRLN  EIWEMPQ
Sbjct: 43 MEFPPEGYRRNVGICLFNSSGKIFAASRLNRPEIWEMPQ 81

The following BLAST results are available for this feature:

BLAST of Cucsat.G13124.T13 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAF2	1.4e-09	69.23	Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NUDT26 PE=1...	[more]
Q9C6Z2	4.1e-06	56.41	Nudix hydrolase 25 OS=Arabidopsis thaliana OX=3702 GN=NUDT25 PE=1 SV=1	[more]
Q9FNH4	7.0e-06	51.28	Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NUDT27 PE=1...	[more]
Q2RV14	1.3e-04	56.25	RNA pyrophosphohydrolase OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1...	[more]

BLAST of Cucsat.G13124.T13 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59203.1	1.33e-18	97.44	hypothetical protein Csa_001538 [Cucumis sativus]	[more]
XP_008443595.2	1.60e-18	97.44	PREDICTED: nudix hydrolase 26, chloroplastic-like [Cucumis melo] >TYK25315.1 nud...	[more]
KAA0043817.1	1.71e-18	97.44	nudix hydrolase 26 [Cucumis melo var. makuwa]	[more]
XP_031739122.1	4.93e-18	97.44	nudix hydrolase 26, chloroplastic [Cucumis sativus]	[more]
XP_038904841.1	8.53e-16	92.31	nudix hydrolase 26, chloroplastic-like [Benincasa hispida]	[more]

BLAST of Cucsat.G13124.T13 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBJ8	6.46e-19	97.44	Nudix hydrolase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G78...	[more]
A0A5D3DP41	7.74e-19	97.44	Nudix hydrolase 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G0...	[more]
A0A1S3B8G6	7.74e-19	97.44	nudix hydrolase 26, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487152 P...	[more]
A0A5A7TPT1	8.30e-19	97.44	Nudix hydrolase 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G0...	[more]
A0A6J1DB53	4.64e-15	89.74	nudix hydrolase 26, chloroplastic-like isoform X3 OS=Momordica charantia OX=3673...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G13124	Cucsat.G13124	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13124.T13.E1	Cucsat.G13124.T13.E1	exon
Cucsat.G13124.T13.E2	Cucsat.G13124.T13.E2	exon
Cucsat.G13124.T13.E3	Cucsat.G13124.T13.E3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13124.T13.C1	Cucsat.G13124.T13.C1	CDS
Cucsat.G13124.T13.C2	Cucsat.G13124.T13.C2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13124.T13	Cucsat.G13124.T13-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006753	nucleoside phosphate metabolic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0034432	bis(5'-adenosyl)-pentaphosphatase activity
molecular_function	GO:0004081	bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity
molecular_function	GO:0008893	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity
molecular_function	GO:0016740	transferase activity