Cucsat.G12797.T4 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G12797.T4
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Thioredoxin domain-containing protein
Location	ctg1838: 4532947 .. 4535378 (-)
RNA-Seq Expression	Cucsat.G12797.T4
Synteny	Cucsat.G12797.T4

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCCAATGCGACGTTGCGTCCTCCTCTTATCCACTTTTTCCCAAAATTCCTCATTCCATTTCAAACCGCTCCATTTGTTTTCTTTTCCATTCCTTTCCTTTCTTCTCTTATTCTCTTCTTCTCCTCCATTTCCATCCCCATCTTCTTGGCTTTCAAGATCTTCCCTCTTCACCTACTTCATTTTCTCTCAATTTCCCACCAACCCCACTTCTTAATTCTTCCTATCTTTCTTCAATTCTTTTGATTTCGTCAGATTTTTCATCCATTTTAATGGCTGACGCTCTCAGCAAGATTGCTTTTCTTGCCCCTTTTCCCCCTTCTTCTTCTTCTTCTCATCGTCACCTTCATCGTCTTTCTCTACCTTTTTCCGAATTTAAATCGGTTGATTCTTCTTCCCATCCCTTTAATTGGAAACGAATTTCTGTGAAATTACCATCCACCTCGGGGCCGTTTTCTAGCAGTTACTCCTATGGCAGAAGAATTGAGTCTACTGAAAGGAATTCTGTTTCTCCTCCACGATCTTCGACGATTTCCCATGTTTGTACTGCCTTCTATCTCTAATTTTAATCTCTAACGTCCTTGAATTTTTAACTGATGTTAGGGTTTGTGGATTTACTTTTTGACTTTTGTTTGTATTGTTAGCTTCTTTGTGTTTGTTTTATTTGATTTTGATTGGGAATCTCAGCTGTCTCTTCATGGTTGTAATTTGGGTTTTTATGAGCTGAAATAGTTGCTGTATGCTTTTATATTTCTGTATTTTAATCCTTTTTCTTGTCTGGAATATGTAGTGATGAATTCCGATGTTGGTGTTTTATTTGTGGGAGAATCCCACTTTTGCAATTCGGTTAGCACTTGATTATGTATATTGTTTATTAACCCTTTTGTTTGCTGTTCAATAGAGTGGCTTTCGGATTCCAAAAGCTCAGAAATGGTGGGAAAAAGGTTTACAACCTAATATGAAGGAGGTAACCGGTGCACATGATTTTGTGGATTCTCTTTTAAATGCTGGGGATAAGCTTGTTATTGTCGATTTCTTCTCCCCTGGTTGTGGTGGCTGCAAAGCTCTTCACCCGAAGGTCTTTCTCATTCTTTAGTGTCTAGAAAAATCTATCTTCTAAGTTTTTCTTGGTCCTGAAGTTTGTATACTGTATGCAGATATGCCAATTTGCTGAGATGTATCCTGATATCCAATTTTTGCAAGTAAACTATGAAGAACACAAATCCATGTGTTATAGTCTTGGTGTCCATGTGCTTCCCTTCTTCCGCTTCTACAGAGGCGCTCAAGGCCGTCTTTGCAGCTTTAGCTGCACTAATGCAACGGTAAGGAATCTTTAAATAGATTGGAAGTGTTCTGCTGTTCTAATGTTATTAGATGATTAGATCATAATATTTTATTTTGGACGTCTCTTCTTTGAAAGAAGCATGCTTTTCATGATTTTCCCTCACTTCGGTGTGGTCTACTAATTTAGGAGTTGTTTTTGGTACAATACTGCATTTCAATAGAGTATGTACTATGCAGTATTGTTGTCCTTTCATCAACGTTGGCCTGTCATTTATCGGTTTTAATTTTTCATTTAACCACATTTGAAACGATTTATTTGTTACTACCTGTTTTGTGGTTTTGTCTGAGCCTCATGAGTATGGAAATCCTTTTTCTTTTTCTTCTCTGCCGATGCATGCACTTGTTTCTCCATAAATTTATTGATGAAAAATTGGTCTGTTCTCACAGATTAAGAAATTCAAGGATGCGTTAGCCAAGCACAACACAGATCGATGCAGCCTTGGCCCCACGCAAGGGTTGGAGGAGAAAGATCTTGCGGCACTTGCCGCCAACAAAGAATTGTCTTTCGACTACACACCTAAACCAGCAGAAGAGGTCCCCATCTCCATCGCCATCCCCATCCCCATCCCCGCCACAGTGGGAGGGGTAAGAACTTCAGAATCAGAACGTTCACGTTCAGATGTGGGACAACTGCCTCTTCCTCTTTCTTCAACTATCCTCAAGTCGTCTGGCCAAGTCTCCATGGAGAATGCCTATGCGGGATGAAGCCGACCCCACCCATATTCTGTACTTAGCATGAGTGCTTTTGGTTGTAAAGGTTCAAGGGTCCTATATTATCGAGACCCAATGAAATAGTAGGGTTTGTTTCTTCTTTCTTTTTTACTTTTGGTGGCTTGGATCCCAGCCTGCTGATTCTTTAGAACATCAGCAGCTAGCTGTGTGATCAATCGATTCTATATTCAGTTGCGTTCTGTACATGGCTGTATAAAGCTTCTCTGCAAGATTATTAGTTAAATATCTCTATAAGATTGTAACTAGTAAATTGGTGTGAAACCAATGAAGAAACTTGTGAACGTTGTTGAATATCAAATATCATACTGAAAACCACCTTTGCTAATTCTTCATCCCTTGAGAATTTTCTTGCATAG

Coding sequence (CDS)

ATCCAATGCGACGTTGCGTCCTCCTCTTATCCACTTTTTCCCAAAATTCCTCATTCCATTTCAAACCGCTCCATTTGTTTTCTTTTCCATTCCTTTCCTTTCTTCTCTTATTCTCTTCTTCTCCTCCATTTCCATCCCCATCTTCTTGGCTTTCAAGATCTTCCCTCTTCACCTACTTCATTTTCTCTCAATTTCCCACCAACCCCACTTCTTAATTCTTCCTATCTTTCTTCAATTCTTTTGATTTCGTCAGATTTTTCATCCATTTTAATGGCTGACGCTCTCAGCAAGATTGCTTTTCTTGCCCCTTTTCCCCCTTCTTCTTCTTCTTCTCATCGTCACCTTCATCGTCTTTCTCTACCTTTTTCCGAATTTAAATCGGTTGATTCTTCTTCCCATCCCTTTAATTGGAAACGAATTTCTGTGAAATTACCATCCACCTCGGGGCCGTTTTCTAGCAGTTACTCCTATGGCAGAAGAATTGAGTCTACTGAAAGGAATTCTGTTTCTCCTCCACGATCTTCGACGATTTCCCATAGTGGCTTTCGGATTCCAAAAGCTCAGAAATGGTGGGAAAAAGGTTTACAACCTAATATGAAGGAGATATGCCAATTTGCTGAGATGTATCCTGATATCCAATTTTTGCAAGTAAACTATGAAGAACACAAATCCATGTGTTATAGTCTTGGTGTCCATGTGCTTCCCTTCTTCCGCTTCTACAGAGGCGCTCAAGGCCGTCTTTGCAGCTTTAGCTGCACTAATGCAACGATTAAGAAATTCAAGGATGCGTTAGCCAAGCACAACACAGATCGATGCAGCCTTGGCCCCACGCAAGGGTTGGAGGAGAAAGATCTTGCGGCACTTGCCGCCAACAAAGAATTGTCTTTCGACTACACACCTAAACCAGCAGAAGAGGTCCCCATCTCCATCGCCATCCCCATCCCCATCCCCGCCACAGTGGGAGGGGTAAGAACTTCAGAATCAGAACGTTCACGTTCAGATGTGGGACAACTGCCTCTTCCTCTTTCTTCAACTATCCTCAAGTCGTCTGGCCAAGTCTCCATGGAGAATGCCTATGCGGGATGA

Protein sequence

IQCDVASSSYPLFPKIPHSISNRSICFLFHSFPFFSYSLLLLHFHPHLLGFQDLPSSPTSFSLNFPPTPLLNSSYLSSILLISSDFSSILMADALSKIAFLAPFPPSSSSSHRHLHRLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGPFSSSYSYGRRIESTERNSVSPPRSSTISHSGFRIPKAQKWWEKGLQPNMKEICQFAEMYPDIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAALAANKELSFDYTPKPAEEVPISIAIPIPIPATVGGVRTSESERSRSDVGQLPLPLSSTILKSSGQVSMENAYAG

Homology

[Close]

BLAST of Cucsat.G12797.T4 vs. ExPASy Swiss-Prot
Match: O64654 (Thioredoxin-like 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g08570 PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.1e-54
Identity = 116/209 (55.50%), Postives = 136/209 (65.07%), Query Frame = 0


Query: 154 SYSYGRRIESTERNSVSPPRSSTI-SHSGFRIPKAQKWWEKGLQPNMKE----------- 213
           S  YG++I   +    S  RSS I + +  RI  AQKWWEKGL+ NM+E           
Sbjct: 53  SVFYGKQIVFGDSQDESFRRSSAITAQTTLRIGTAQKWWEKGLKDNMREISSAQELVDSL 112

Query: 214 --------------------------ICQFAEMYPDIQFLQVNYEEHKSMCYSLGVHVLP 273
                                     ICQFAEM PD+QFLQVNYEEHKSMCYSLGVHVLP
Sbjct: 113 TNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSLGVHVLP 172

Query: 274 FFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAALAANKELS 319
           FFRFYRG+QGR+CSFSCTNATIKKF+DALAKH  DRCSLGPT+GLEEK+L ALAANKEL+
Sbjct: 173 FFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGPTKGLEEKELVALAANKELN 232

[Close]

BLAST of Cucsat.G12797.T4 vs. ExPASy Swiss-Prot
Match: Q10M18 (Thioredoxin-like 1-2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0326500 PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-49
Identity = 108/188 (57.45%), Postives = 117/188 (62.23%), Query Frame = 0


Query: 158 GRRIESTERNSVSPPRSSTIS-HSGFRIPKAQKWWEKGLQPNMKE--------------- 217
           GRR+    R S   PR+            KA KWWEKGLQPNM+E               
Sbjct: 54  GRRLAVGPRRSRPVPRNLVAPVQMNLAFAKATKWWEKGLQPNMREVESAQDLVDSLTNAG 113

Query: 218 ----------------------ICQFAEMYPDIQFLQVNYEEHKSMCYSLGVHVLPFFRF 277
                                 ICQ AE  PD+ FLQVNYEEHKSMCYSL VHVLPFFRF
Sbjct: 114 DNLVIVDFFSPGCGGCRALHPKICQIAEQNPDVLFLQVNYEEHKSMCYSLHVHVLPFFRF 173

Query: 278 YRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAALAANKELSFDYT 308
           YRGAQGRLCSFSCTNATIKKF+DALAKH  DRCSLGPT+GLEE +L ALAANK+L F+YT
Sbjct: 174 YRGAQGRLCSFSCTNATIKKFRDALAKHKPDRCSLGPTRGLEESELLALAANKDLQFNYT 233

[Close]

BLAST of Cucsat.G12797.T4 vs. ExPASy Swiss-Prot
Match: Q6Z4N3 (Thioredoxin-like 1-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0684100 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.8e-45
Identity = 110/239 (46.03%), Postives = 135/239 (56.49%), Query Frame = 0


Query: 149 GPFSSSYSY-GRRIESTERNSVSPPRSSTISHS--GFRIPKAQKWWEKGLQPNMKE---- 208
           G +SS  ++   R+  TER +   PR+   +H      I KA +WWEK LQPNM+E    
Sbjct: 42  GGYSSKSTFPSGRVALTERKARPLPRNLEAAHGQMNLTIGKAMRWWEKCLQPNMREIESA 101

Query: 209 ---------------------------------ICQFAEMYPDIQFLQVNYEEHKSMCYS 268
                                            I Q AE  P++ FLQVNYE+HKSMCYS
Sbjct: 102 QDLADSLLNAGDKLVVVDFFSPGCGGCRALHPKIAQLAEKNPEVLFLQVNYEKHKSMCYS 161

Query: 269 LGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAAL 328
           L VHVLPFFRFYRGAQGR+ SFSCTNATIKKFKDALAKH  DRC LGP +GLEE +L AL
Sbjct: 162 LHVHVLPFFRFYRGAQGRVSSFSCTNATIKKFKDALAKHGPDRCGLGPAKGLEESELMAL 221

Query: 329 AANKELSFDYTPKPAEEVPISIAIP----------IPIPATVGGVRTSESERSRSDVGQ 338
           A N++L+F YTP   + VPI+ A+           +P+PAT   +    SE S    G+
Sbjct: 222 AINRDLNFTYTPN-QDLVPIADALLKEAAAPGGPWLPLPATATQLFIQGSENSLLSSGR 279

[Close]

BLAST of Cucsat.G12797.T4 vs. ExPASy Swiss-Prot
Match: O22779 (Thioredoxin-like 1-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g33270 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.2e-41
Identity = 81/154 (52.60%), Postives = 102/154 (66.23%), Query Frame = 0


Query: 184 IPKAQKWWEKGLQPNMK-------------------------------------EICQFA 243
           I + QKWWEK L+PNMK                                     +IC+ A
Sbjct: 80  IGRNQKWWEKELKPNMKSVTSPQDLVVSLRNAGDKLVVVDFFSPSCGGCKALHPKICKIA 139

Query: 244 EMYPDIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAK 301
           E  P+++FLQVNYEEH+S+C SL +HVLPFFRFYRG+ GR+CSFSCTNATI+KFK+AL K
Sbjct: 140 EKNPEVEFLQVNYEEHRSLCQSLNIHVLPFFRFYRGSSGRVCSFSCTNATIRKFKEALEK 199

[Close]

BLAST of Cucsat.G12797.T4 vs. ExPASy Swiss-Prot
Match: Q9XFI1 (Thioredoxin-like 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g61440 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.9e-31
Identity = 81/214 (37.85%), Postives = 111/214 (51.87%), Query Frame = 0


Query: 121 PFSEFKSVDSSSHPFNWKRISVKLPSTSGPFSSSYSYGRRIESTERNSVSPPRSSTISHS 180
           PFS+     S   PF      + L     P +S+    + + +   +S SP ++ T   S
Sbjct: 18  PFSQENQSKSKLSPF------MSLDLKEHPMASADFTNQTLTAFSSSSASPFQAKT---S 77

Query: 181 GFRIPKAQKWWEKGLQPNMKE-------------------------------------IC 240
              + +  +WWEK    NM E                                     IC
Sbjct: 78  SIGMSRGMRWWEKSTNHNMLEIQSANHLVDSLLNAGDRLVVLDFYSPGCGGCKSLHPKIC 137

Query: 241 QFAEMYPDIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDA 298
           Q AE  P++ FL+VN EE ++MC+ L VHVLPFF+FYRGA+G++CSFSCT ATI KFK A
Sbjct: 138 QLAETNPNVMFLKVNQEELRTMCHGLNVHVLPFFKFYRGAEGKVCSFSCTIATINKFKKA 197

[Close]

BLAST of Cucsat.G12797.T4 vs. NCBI nr
Match: XP_031738084.1 (thioredoxin-like 1-1, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 545 bits (1403), Expect = 7.42e-194
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0


Query: 91  MADALSKIAFLAPFPPSSSSSHRHLHRLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGP 150
           MADALSKIAFLAPFPPSSSSSHRHLHRLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGP
Sbjct: 1   MADALSKIAFLAPFPPSSSSSHRHLHRLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGP 60

Query: 151 FSSSYSYGRRIESTERNSVSPPRSSTISHSGFRIPKAQKWWEKGLQPNMKEICQFAEMYP 210
           FSSSYSYGRRIESTERNSVSPPRSSTISHSGFRIPKAQKWWEKGLQPNMKEICQFAEMYP
Sbjct: 61  FSSSYSYGRRIESTERNSVSPPRSSTISHSGFRIPKAQKWWEKGLQPNMKEICQFAEMYP 120

Query: 211 DIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTD 270
           DIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTD
Sbjct: 121 DIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTD 180

Query: 271 RCSLGPTQGLEEKDLAALAANKELSFDYTPKPAEEVPISIAIPIPIPATVGGVRTSESER 330
           RCSLGPTQGLEEKDLAALAANKELSFDYTPKPAEEVPISIAIPIPIPATVGGVRTSESER
Sbjct: 181 RCSLGPTQGLEEKDLAALAANKELSFDYTPKPAEEVPISIAIPIPIPATVGGVRTSESER 240

Query: 331 SRSDVGQLPLPLSSTILKSSGQVSMENAYAG 361
           SRSDVGQLPLPLSSTILKSSGQVSMENAYAG
Sbjct: 241 SRSDVGQLPLPLSSTILKSSGQVSMENAYAG 271

[Close]

BLAST of Cucsat.G12797.T4 vs. NCBI nr
Match: XP_004141145.1 (thioredoxin-like 1-1, chloroplastic isoform X1 [Cucumis sativus] >KGN59768.1 hypothetical protein Csa_002050 [Cucumis sativus])

HSP 1 Score: 526 bits (1355), Expect = 5.91e-186
Identity = 271/308 (87.99%), Postives = 271/308 (87.99%), Query Frame = 0


Query: 91  MADALSKIAFLAPFPPSSSSSHRHLHRLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGP 150
           MADALSKIAFLAPFPPSSSSSHRHLHRLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGP
Sbjct: 1   MADALSKIAFLAPFPPSSSSSHRHLHRLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGP 60

Query: 151 FSSSYSYGRRIESTERNSVSPPRSSTISHSGFRIPKAQKWWEKGLQPNMKE--------- 210
           FSSSYSYGRRIESTERNSVSPPRSSTISHSGFRIPKAQKWWEKGLQPNMKE         
Sbjct: 61  FSSSYSYGRRIESTERNSVSPPRSSTISHSGFRIPKAQKWWEKGLQPNMKEVTGAHDFVD 120

Query: 211 ----------------------------ICQFAEMYPDIQFLQVNYEEHKSMCYSLGVHV 270
                                       ICQFAEMYPDIQFLQVNYEEHKSMCYSLGVHV
Sbjct: 121 SLLNAGDKLVIVDFFSPGCGGCKALHPKICQFAEMYPDIQFLQVNYEEHKSMCYSLGVHV 180

Query: 271 LPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAALAANKE 330
           LPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAALAANKE
Sbjct: 181 LPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAALAANKE 240

Query: 331 LSFDYTPKPAEEVPISIAIPIPIPATVGGVRTSESERSRSDVGQLPLPLSSTILKSSGQV 361
           LSFDYTPKPAEEVPISIAIPIPIPATVGGVRTSESERSRSDVGQLPLPLSSTILKSSGQV
Sbjct: 241 LSFDYTPKPAEEVPISIAIPIPIPATVGGVRTSESERSRSDVGQLPLPLSSTILKSSGQV 300

[Close]

BLAST of Cucsat.G12797.T4 vs. NCBI nr
Match: XP_038906024.1 (thioredoxin-like 1-1, chloroplastic [Benincasa hispida])

HSP 1 Score: 405 bits (1041), Expect = 2.95e-138
Identity = 228/313 (72.84%), Postives = 236/313 (75.40%), Query Frame = 0


Query: 91  MADALSKIAFLAPFPPSSSSSHRHLHRLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGP 150
           MADALSKIAF APFPPSSSS   HLH+L  P S  KSV SSSHPFNW+ +SVKLP TS P
Sbjct: 1   MADALSKIAF-APFPPSSSSIC-HLHQLPPPSSGLKSVYSSSHPFNWQPLSVKLPPTSRP 60

Query: 151 FSSSYSYGRRIESTE-----RNSVSPPRSSTISHSGFRIPKAQKWWEKGLQPNMKE---- 210
           FSSS+SY RRIE TE     RNSVSP RSSTISHSGFRIPK QKWWEKGLQPNMKE    
Sbjct: 61  FSSSHSYCRRIEFTEAWGFSRNSVSPSRSSTISHSGFRIPKPQKWWEKGLQPNMKEVTGA 120

Query: 211 ---------------------------------ICQFAEMYPDIQFLQVNYEEHKSMCYS 270
                                            ICQ AEMYPDIQFLQVNYEEHKSMCYS
Sbjct: 121 HDLVDSLLNAGDKLVIVDFFSPGCGGCKALHPKICQSAEMYPDIQFLQVNYEEHKSMCYS 180

Query: 271 LGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAAL 330
           LGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDL AL
Sbjct: 181 LGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLVAL 240

Query: 331 AANKELSFDYTPKPAEEVPISIAIPIPIPATVGGVRTSESERSRSDVGQLPLPLSSTILK 361
           AANKELSF+Y PKPAEEVPI      PIPATV GVR SES+RSRSD+ QLPLPL STILK
Sbjct: 241 AANKELSFNYMPKPAEEVPI------PIPATVEGVRISESKRSRSDLEQLPLPLPSTILK 300

[Close]

BLAST of Cucsat.G12797.T4 vs. NCBI nr
Match: XP_031738086.1 (thioredoxin-like 1-1, chloroplastic isoform X4 [Cucumis sativus])

HSP 1 Score: 372 bits (954), Expect = 1.52e-126
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 180 SGFRIPKAQKWWEKGLQPNMKEICQFAEMYPDIQFLQVNYEEHKSMCYSLGVHVLPFFRF 239
           SGFRIPKAQKWWEKGLQPNMKEICQFAEMYPDIQFLQVNYEEHKSMCYSLGVHVLPFFRF
Sbjct: 25  SGFRIPKAQKWWEKGLQPNMKEICQFAEMYPDIQFLQVNYEEHKSMCYSLGVHVLPFFRF 84

Query: 240 YRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAALAANKELSFDYT 299
           YRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAALAANKELSFDYT
Sbjct: 85  YRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAALAANKELSFDYT 144

Query: 300 PKPAEEVPISIAIPIPIPATVGGVRTSESERSRSDVGQLPLPLSSTILKSSGQVSMENAY 359
           PKPAEEVPISIAIPIPIPATVGGVRTSESERSRSDVGQLPLPLSSTILKSSGQVSMENAY
Sbjct: 145 PKPAEEVPISIAIPIPIPATVGGVRTSESERSRSDVGQLPLPLSSTILKSSGQVSMENAY 204

Query: 360 AG 361
           AG
Sbjct: 205 AG 206

[Close]

BLAST of Cucsat.G12797.T4 vs. NCBI nr
Match: XP_023529031.1 (thioredoxin-like 1-1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 368 bits (944), Expect = 4.12e-123
Identity = 216/347 (62.25%), Postives = 237/347 (68.30%), Query Frame = 0


Query: 57  SPTSFSLNFPPTPLLNSSYLSSILLISSDFSSILMADALSKIAFLAPFPPSSSSSHRHLH 116
           SPT +   FPP   L    LSSI  IS   S I MADA+S I+F    P   SS+H    
Sbjct: 4   SPTIYPFKFPPISHLLILLLSSIAAISIHSSLISMADAVSNISFA---PSLRSSNH---- 63

Query: 117 RLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGPFSSSYSYGRRIESTE-----RNSVSP 176
            L  P S  KS++SSS+P NW+R+SVKLPST  PFS S S  + IE TE     RNSVSP
Sbjct: 64  -LPPPISALKSLNSSSYPLNWQRLSVKLPSTLRPFSISDSNSQIIEFTEARDISRNSVSP 123

Query: 177 PRSSTISHSGFRIPKAQKWWEKGLQPNMKEI----------------------------- 236
            RSST   SGFR+PKAQKWW+KGLQPNMK++                             
Sbjct: 124 TRSST---SGFRVPKAQKWWDKGLQPNMKDVTGAQDFVDSLLSAGDKLVIVIFFSPGCGG 183

Query: 237 --------CQFAEMYPDIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRLCSFSCTN 296
                   CQFAEMYPDIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRLCSFSCTN
Sbjct: 184 CKALHPKMCQFAEMYPDIQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGAQGRLCSFSCTN 243

Query: 297 ATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAALAANKELSFDYTPKPAEEVPISIAIPI 356
           ATIKKFKDALAKHNT+RCSLGPTQGLEEKDL ALAAN+ELSF+YTPKPAEEVP+      
Sbjct: 244 ATIKKFKDALAKHNTERCSLGPTQGLEEKDLVALAANRELSFNYTPKPAEEVPM------ 303

Query: 357 PIPATVGGVRTSESERSRSDVGQLPLPLSSTILKSSGQVSMENAYAG 361
           PIPATVGG+  SE ++SRSD  Q PLPL ST LKS G VS ENAY G
Sbjct: 304 PIPATVGGLGISELDKSRSDSEQPPLPLPSTFLKS-GHVSKENAYVG 332

[Close]

BLAST of Cucsat.G12797.T4 vs. ExPASy TrEMBL
Match: A0A0A0LD91 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G844860 PE=4 SV=1)

HSP 1 Score: 526 bits (1355), Expect = 2.86e-186
Identity = 271/308 (87.99%), Postives = 271/308 (87.99%), Query Frame = 0


Query: 91  MADALSKIAFLAPFPPSSSSSHRHLHRLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGP 150
           MADALSKIAFLAPFPPSSSSSHRHLHRLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGP
Sbjct: 1   MADALSKIAFLAPFPPSSSSSHRHLHRLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGP 60

Query: 151 FSSSYSYGRRIESTERNSVSPPRSSTISHSGFRIPKAQKWWEKGLQPNMKE--------- 210
           FSSSYSYGRRIESTERNSVSPPRSSTISHSGFRIPKAQKWWEKGLQPNMKE         
Sbjct: 61  FSSSYSYGRRIESTERNSVSPPRSSTISHSGFRIPKAQKWWEKGLQPNMKEVTGAHDFVD 120

Query: 211 ----------------------------ICQFAEMYPDIQFLQVNYEEHKSMCYSLGVHV 270
                                       ICQFAEMYPDIQFLQVNYEEHKSMCYSLGVHV
Sbjct: 121 SLLNAGDKLVIVDFFSPGCGGCKALHPKICQFAEMYPDIQFLQVNYEEHKSMCYSLGVHV 180

Query: 271 LPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAALAANKE 330
           LPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAALAANKE
Sbjct: 181 LPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAALAANKE 240

Query: 331 LSFDYTPKPAEEVPISIAIPIPIPATVGGVRTSESERSRSDVGQLPLPLSSTILKSSGQV 361
           LSFDYTPKPAEEVPISIAIPIPIPATVGGVRTSESERSRSDVGQLPLPLSSTILKSSGQV
Sbjct: 241 LSFDYTPKPAEEVPISIAIPIPIPATVGGVRTSESERSRSDVGQLPLPLSSTILKSSGQV 300

[Close]

BLAST of Cucsat.G12797.T4 vs. ExPASy TrEMBL
Match: A0A6J1ICM9 (thioredoxin-like 1-1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471322 PE=4 SV=1)

HSP 1 Score: 352 bits (903), Expect = 9.26e-118
Identity = 200/313 (63.90%), Postives = 219/313 (69.97%), Query Frame = 0


Query: 91  MADALSKIAFLAPFPPSSSSSHRHLHRLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGP 150
           MADA+S I+F        S S R  + L  P S  KS++SSS+P NW+R+SV LPST  P
Sbjct: 1   MADAVSNISF--------SPSLRCSNHLPPPISALKSLNSSSYPLNWQRLSVNLPSTLRP 60

Query: 151 FSSSYSYGRRIESTE-----RNSVSPPRSSTISHSGFRIPKAQKWWEKGLQPNMKEI--- 210
           FS S S  R IE TE     RNSVSP RSST   SGFR+PKAQKWW+KGLQPNMK++   
Sbjct: 61  FSISDSNSRIIEFTEARDISRNSVSPTRSST---SGFRVPKAQKWWDKGLQPNMKDVTGA 120

Query: 211 ----------------------------------CQFAEMYPDIQFLQVNYEEHKSMCYS 270
                                             CQFAEMYPDIQFLQVNYEEHKSMCYS
Sbjct: 121 QDFVDSLLSAGDKLVIVIFFSPGCGGCKALHPKMCQFAEMYPDIQFLQVNYEEHKSMCYS 180

Query: 271 LGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAAL 330
           LGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFK ALAKHNT+RCSLGPTQGLEEKDL AL
Sbjct: 181 LGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKYALAKHNTERCSLGPTQGLEEKDLVAL 240

Query: 331 AANKELSFDYTPKPAEEVPISIAIPIPIPATVGGVRTSESERSRSDVGQLPLPLSSTILK 361
           AAN+ELSF+YTPKPAEEVP+      PIPATVGG+  SE ++SRSD  QLPLPL ST LK
Sbjct: 241 AANRELSFNYTPKPAEEVPM------PIPATVGGLGISELDKSRSDSEQLPLPLPSTFLK 295

[Close]

BLAST of Cucsat.G12797.T4 vs. ExPASy TrEMBL
Match: A0A6J1EYA1 (thioredoxin-like 1-1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111439903 PE=4 SV=1)

HSP 1 Score: 349 bits (896), Expect = 1.07e-116
Identity = 200/313 (63.90%), Postives = 220/313 (70.29%), Query Frame = 0


Query: 91  MADALSKIAFLAPFPPSSSSSHRHLHRLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGP 150
           MADA+S I+F    P   SS+H     L  P S  KS++SSS+P N +R+SVKLPST  P
Sbjct: 1   MADAVSNISFA---PSLRSSNH-----LPPPISALKSLNSSSYPLNCQRLSVKLPSTLRP 60

Query: 151 FSSSYSYGRRIESTE-----RNSVSPPRSSTISHSGFRIPKAQKWWEKGLQPNMKEI--- 210
           FS S S  + IE TE     RNSVSP RSST   SGFR+PKAQKWW+KGLQPNMK++   
Sbjct: 61  FSISDSNSQIIEFTEARDISRNSVSPTRSST---SGFRVPKAQKWWDKGLQPNMKDVTGA 120

Query: 211 ----------------------------------CQFAEMYPDIQFLQVNYEEHKSMCYS 270
                                             CQFAEMYPDIQFLQVNYEEHKSMCYS
Sbjct: 121 QDFVDSLLSAGDKLVIVIFFSPGCGGCKALHPKMCQFAEMYPDIQFLQVNYEEHKSMCYS 180

Query: 271 LGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAAL 330
           LGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNT+RCSLGPTQGLEEKDL AL
Sbjct: 181 LGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTERCSLGPTQGLEEKDLVAL 240

Query: 331 AANKELSFDYTPKPAEEVPISIAIPIPIPATVGGVRTSESERSRSDVGQLPLPLSSTILK 361
           AAN+ELSF+YTPKPAEEVP+      PIPATVGG+  SE ++SRSD  Q PLPL ST LK
Sbjct: 241 AANRELSFNYTPKPAEEVPM------PIPATVGGLGISELDKSRSDSEQPPLPLPSTFLK 295

[Close]

BLAST of Cucsat.G12797.T4 vs. ExPASy TrEMBL
Match: A0A6J1I9C0 (thioredoxin-like 1-1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470833 PE=4 SV=1)

HSP 1 Score: 332 bits (851), Expect = 7.83e-110
Identity = 194/313 (61.98%), Postives = 210/313 (67.09%), Query Frame = 0


Query: 91  MADALSKIAFLAPFPPSSSSSHRHLHRLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGP 150
           MADALSKI+F +P  PS S      H L  P    KSV SSS+P  WKR+S+KLPS S  
Sbjct: 1   MADALSKISF-SPSRPSFSP-----HHLPPPIYGLKSVISSSNPSTWKRLSLKLPSASLS 60

Query: 151 FSSSYSYGRRIESTE-----RNSVSPPRSSTISHSGFRIPKAQKWWEKGLQPNMKE---- 210
           FSS  SYG RI+  E     RNS SP RSSTISHSGFR PKAQKWWE+GL+ NMKE    
Sbjct: 61  FSSRDSYGERIQFREAKVISRNSTSPTRSSTISHSGFRTPKAQKWWERGLEANMKEVSSA 120

Query: 211 ---------------------------------ICQFAEMYPDIQFLQVNYEEHKSMCYS 270
                                            ICQFAEM P+IQFLQVNYEEHKSMCYS
Sbjct: 121 EELVDSLLNAGDKLVIVDFFSPGCGGCKALHPKICQFAEMNPEIQFLQVNYEEHKSMCYS 180

Query: 271 LGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAAL 330
           LGVHVLPFFRFYRGAQGR+CSFSCTNATIKKFKDALAKHNTDRCSLGPT+GLEEK+L AL
Sbjct: 181 LGVHVLPFFRFYRGAQGRVCSFSCTNATIKKFKDALAKHNTDRCSLGPTRGLEEKELVAL 240

Query: 331 AANKELSFDYTPKPAEEVPISIAIPIPIPATVGGVRTSESERSRSDVGQLPLPLSSTILK 361
           AAN+EL F+YTPK AEEVPI I I     A  G V+ SESE SR       LPL STILK
Sbjct: 241 AANRELCFNYTPKAAEEVPIPITIHPR--AHAGSVKISESEPSR-------LPLPSTILK 298

[Close]

BLAST of Cucsat.G12797.T4 vs. ExPASy TrEMBL
Match: A0A6J1EXI9 (thioredoxin-like 1-1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111439173 PE=4 SV=1)

HSP 1 Score: 329 bits (843), Expect = 1.32e-108
Identity = 194/313 (61.98%), Postives = 211/313 (67.41%), Query Frame = 0


Query: 91  MADALSKIAFLAPFPPSSSSSHRHLHRLSLPFSEFKSVDSSSHPFNWKRISVKLPSTSGP 150
           MADALSKI+F +P  PS S      H L  P    KSV SSS+P  WKR+S+KLPS S  
Sbjct: 1   MADALSKISF-SPSRPSFSP-----HHLPPPIYGLKSVISSSNPSTWKRLSLKLPSASLS 60

Query: 151 FSSSYSYGRRIESTE-----RNSVSPPRSSTISHSGFRIPKAQKWWEKGLQPNMKE---- 210
           FSS  SYG RIE  E     RNS SP RSSTISHSGFR PKAQKWWEKGL+ NMKE    
Sbjct: 61  FSSRDSYGGRIEFREAKGISRNSTSPTRSSTISHSGFRTPKAQKWWEKGLEANMKEVSSA 120

Query: 211 ---------------------------------ICQFAEMYPDIQFLQVNYEEHKSMCYS 270
                                            ICQFAEM P+IQFLQVNYEEHKSMCYS
Sbjct: 121 EELVDSLLNAGDKLVIVDFFSPGCGGCKALHPKICQFAEMNPEIQFLQVNYEEHKSMCYS 180

Query: 271 LGVHVLPFFRFYRGAQGRLCSFSCTNATIKKFKDALAKHNTDRCSLGPTQGLEEKDLAAL 330
           LGVHVLPFFRFYRGAQGR+CSFSCTNATIKKFKDALAKHNT+RCSLGPT+GLEEK+L AL
Sbjct: 181 LGVHVLPFFRFYRGAQGRVCSFSCTNATIKKFKDALAKHNTERCSLGPTRGLEEKELMAL 240

Query: 331 AANKELSFDYTPKPAEEVPISIAIPIPIPATVGGVRTSESERSRSDVGQLPLPLSSTILK 361
           AAN+EL F+YTPK AEEVPI I I     A  G V+ SESE SR     LPLP S+ +LK
Sbjct: 241 AANRELCFNYTPKAAEEVPIPITIHAR--AHAGSVKISESEPSR-----LPLP-STILLK 299

The following BLAST results are available for this feature:

BLAST of Cucsat.G12797.T4 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64654	1.1e-54	55.50	Thioredoxin-like 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g08570...	[more]
Q10M18	1.1e-49	57.45	Thioredoxin-like 1-2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
Q6Z4N3	2.8e-45	46.03	Thioredoxin-like 1-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
O22779	4.2e-41	52.60	Thioredoxin-like 1-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g33270...	[more]
Q9XFI1	3.9e-31	37.85	Thioredoxin-like 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g61440...	[more]

BLAST of Cucsat.G12797.T4 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031738084.1	7.42e-194	100.00	thioredoxin-like 1-1, chloroplastic isoform X2 [Cucumis sativus]	[more]
XP_004141145.1	5.91e-186	87.99	thioredoxin-like 1-1, chloroplastic isoform X1 [Cucumis sativus] >KGN59768.1 hyp...	[more]
XP_038906024.1	2.95e-138	72.84	thioredoxin-like 1-1, chloroplastic [Benincasa hispida]	[more]
XP_031738086.1	1.52e-126	100.00	thioredoxin-like 1-1, chloroplastic isoform X4 [Cucumis sativus]	[more]
XP_023529031.1	4.12e-123	62.25	thioredoxin-like 1-1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cucsat.G12797.T4 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD91	2.86e-186	87.99	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G844860...	[more]
A0A6J1ICM9	9.26e-118	63.90	thioredoxin-like 1-1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471322 ...	[more]
A0A6J1EYA1	1.07e-116	63.90	thioredoxin-like 1-1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC11143990...	[more]
A0A6J1I9C0	7.83e-110	61.98	thioredoxin-like 1-1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470833 ...	[more]
A0A6J1EXI9	1.32e-108	61.98	thioredoxin-like 1-1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC11143917...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 193..267 e-value: 2.6E-5 score: 25.9
None	No IPR available	PANTHER	PTHR43601:SF9	THIOREDOXIN-LIKE 1-3, CHLOROPLASTIC	coord: 202..345 coord: 131..202
None	No IPR available	PANTHER	PTHR43601	THIOREDOXIN, MITOCHONDRIAL	coord: 202..345 coord: 131..202
None	No IPR available	CDD	cd02947	TRX_family	coord: 202..244 e-value: 3.17849E-6 score: 42.9305
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 202..268

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G12797	Cucsat.G12797	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G12797.T4.E1	Cucsat.G12797.T4.E1	exon
Cucsat.G12797.T4.E2	Cucsat.G12797.T4.E2	exon
Cucsat.G12797.T4.E3	Cucsat.G12797.T4.E3	exon
Cucsat.G12797.T4.E4	Cucsat.G12797.T4.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G12797.T4.C4	Cucsat.G12797.T4.C4	CDS
Cucsat.G12797.T4.C3	Cucsat.G12797.T4.C3	CDS
Cucsat.G12797.T4.C2	Cucsat.G12797.T4.C2	CDS
Cucsat.G12797.T4.C1	Cucsat.G12797.T4.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G12797.T4	Cucsat.G12797.T4-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
cellular_component	GO:0009507	chloroplast