Cucsat.G1052.T3 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G1052.T3
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	50S ribosomal protein L5, chloroplastic
Location	ctg1: 7189676 .. 7191777 (+)
RNA-Seq Expression	Cucsat.G1052.T3
Synteny	Cucsat.G1052.T3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGGATTTTGATTGTTTCCGAAGTATAATTTGTTTGTTTATTAACTATTTCTTACAAATGCTAGAAGGTTCGGAAATTATTATTGGTTTTCTACTAAAAATTTCTAGATACAAGTACTTCTGTGAATTACGTACAGCCGCGTGGAAGATGAGGATTCTTGATGAAATAAAATACTCTGAAAACTGAGACGAAGTTCATATTTGTATTCAGCGGTGGTATTCTACAATACTTTTTCTTCTTCTCTTGGATTAAGTTGGAGTTTTCATTTTTGGTTGTGATTTTAATTAGTGGGTCTCAAAGAATTATGGCTTTAGTGTTTTTTTCTCATTCCATCTCAAAATTTGACAGCATATGACGACTAAGTACAAATTCTTCCAATGAAATATCCGTACCTTTTCTCTTAGGTCCCCAAAATTGAGAAGATAGTGGTGAATTGTGGTATTGGAGATGCCCAGCAGAATGCGAAGGGTTTGGAAGCTGCAATAAATGAATTGGCATCCATTACCGGACAACGACCCGTGAAAACACGTGCAAAGAAGTCCATTGCAACCTTCAAGATCAGGGAGGGTCAACCACTTGGGATTGCTGCAACCCTAAGGGGAAATGTGAGTTTCACTTGTTTTTTCTCATAGAATTTCCAACTAGTCGTTGTTTCTTTTGGTATTTTGGCTTCTGTTGTAGTTCTCAGTGCTATTTTGTTCAGCATATCTTGATATGGGAAATGCATTTTGATACTTGGATCTGGCTCTAATTTTCAAAATTTGTAGTCACTAACATTTCTTATGTTTTACATGTCTATCTTTCCAGTCTTGAATTATTACATTGATAATCGTCTTGAATTATTACATTGATGATCTGTATACGCTTTTATCGTAGTTGGTGTAGTGGATGTCTCTGGTATGATAATGATGTTAGGAATTCGATTGTTTGAGATAATAATATAAAAGAAGTGCGAAAGAATGACTTTGGAGGAGGGAGTTGCCCCTTCACGTCATGGGCTTGATACATTTTATCCTGAACTCGTCTAATGAAGAAGATTTGTGTGAAATTTGTCAACGAGTGGAAAGGACAAGATAGATGCAACGTTTTTTTGTGCATTGTTATAATTGAAGAGATCTCACATCATTAAATGGAAAAGTTTATGTGTGTGGCTCTAGGCATTTATGATCCGTAAACGCCTTAATCAGCATATTTCTCTGTTTAATGATGTTAGGAATTTGGTTCTTTGAGATAATTATCCAAACCAAGTGCAAAGGAATGGGCTCATGTATGGAGTTGCTCCTTCACAGGCTTGATACTCGTTTAGTGAACAATATTTTTGTGTCAATGTTAATTATGATGGAGTATGTGGAAGGACAAAATAATGGAAGATATCTTGCATCAATACATAGAAGAAGTTTTGGGTGTTGCTGCTGCCATTCGTGTCCTGAGTGTTAAAACAGCTTGATTTTTATGTTACTTGCTCGTTGATTGTACTTATAGGTGATGTACTCTTTCCTGGATCGTTTGATCAACTTGGGGCTGCCTAGAACAAGGGACTTTCAGGGACTGAACTCGAGTAGCTTTGATGGACATGGAAATTACTCCATTGGTATCCGTGAACAGAGTGTGTTCCCAGAAATAAAGTTCGACACACTTGGCAAACCGAGGGGGATGGACGTTTGTATCACAACAACAGCTGAAACCGATCAAGAAGCTCAGCGGCTCCTGGCTCTCATGGGAATGCCGTTCAGAGAGAGTGGTGGTGCCGCAGCTGTGATGCGGAAAAAGAAGCTAAAGTCCCACCATTTTGATTCCAAATCCAAGGGAAGAGCTCGGAGGTAATGAATTCATTTTTAGGAACAAGGCTTTTACATTTCCTCAATTCATCTGTTGTATCTTTACTAGAAAAACTATACTCTAGCTAATTTAGCTGGGTTGTATGCTATAATTTGATGAAGTTATAGAGTTTTGTTTATTAGATTACTTCCATTAGCTCTGAACGCCAACCGGCAATTTCGCAGTTCTGAATAGAGTTCTAGCACCGAATGCTGCATACGAACAGTATCCCCTTGGCCATTGAACAAACCATAGGCCTTGCTCTGAATAGAAAATACCTAAA

Coding sequence (CDS)

ATGTACTCTTTCCTGGATCGTTTGATCAACTTGGGGCTGCCTAGAACAAGGGACTTTCAGGGACTGAACTCGAGTAGCTTTGATGGACATGGAAATTACTCCATTGGTATCCGTGAACAGAGTGTGTTCCCAGAAATAAAGTTCGACACACTTGGCAAACCGAGGGGGATGGACGTTTGTATCACAACAACAGCTGAAACCGATCAAGAAGCTCAGCGGCTCCTGGCTCTCATGGGAATGCCGTTCAGAGAGAGTGGTGGTGCCGCAGCTGTGATGCGGAAAAAGAAGCTAAAGTCCCACCATTTTGATTCCAAATCCAAGGGAAGAGCTCGGAGGTAA

Protein sequence

MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVCITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR

Homology

[Close]

BLAST of Cucsat.G1052.T3 vs. ExPASy Swiss-Prot
Match: O04603 (50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL5 PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 8.1e-44
Identity = 83/111 (74.77%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINL LPRTRDFQG++ SSFDG+GNYSIG+++Q VFPEI+FD +GK RGMDVC
Sbjct: 151 MYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRFDAVGKTRGMDVC 210

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAA--AVMRKKKLKSHHFDSKSKGR 110
           I+TTA++DQE Q+LLALMGMPFRE GG +  A++RKKKLKSHHFD+K KG+
Sbjct: 211 ISTTAKSDQEGQKLLALMGMPFREGGGGSTGAIVRKKKLKSHHFDAKGKGK 261

[Close]

BLAST of Cucsat.G1052.T3 vs. ExPASy Swiss-Prot
Match: P82192 (50S ribosomal protein L5, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL5 PE=1 SV=3)

HSP 1 Score: 174.9 bits (442), Expect = 5.2e-43
Identity = 84/109 (77.06%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINL LPRTRDFQG+N +SFDGHGNYS+G REQSVFPEIK + +GK RGMDVC
Sbjct: 149 MYSFLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVC 208

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGR 110
           ITTTA+TD+EA +LL+LMGMPFRE  G + ++RKKKLKSHHFD+K KGR
Sbjct: 209 ITTTAKTDKEAYKLLSLMGMPFREGSGPSTLVRKKKLKSHHFDAK-KGR 256

[Close]

BLAST of Cucsat.G1052.T3 vs. ExPASy Swiss-Prot
Match: Q9ZST0 (50S ribosomal protein L5, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 151.8 bits (382), Expect = 4.7e-36
Identity = 71/109 (65.14%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           M++FLDRLINLGLPRT DF G+N +SFDGHGN++IG+R+Q VFPEI ++  GK  GMDVC
Sbjct: 170 MFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPYEVGGKKNGMDVC 229

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGR 110
           I TTA+TD EA RLL L+GMPF E   ++ V+RKK+LK HHF SK +GR
Sbjct: 230 IVTTAKTDNEALRLLTLLGMPFAEHIKSSVVIRKKRLKRHHFMSKGRGR 278

[Close]

BLAST of Cucsat.G1052.T3 vs. ExPASy Swiss-Prot
Match: Q9MUU5 (50S ribosomal protein L5, chloroplastic OS=Mesostigma viride OX=41882 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-27
Identity = 54/84 (64.29%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MY+FLDRLINL LPR RDFQG++S SFDGHGNY++G++EQ +FPEI +D + K RGMD+C
Sbjct: 97  MYAFLDRLINLALPRIRDFQGVSSKSFDGHGNYNLGLKEQLMFPEIDYDQIDKIRGMDIC 156

Query: 61  ITTTAETDQEAQRLLALMGMPFRE 85
           I T A+TD E   LL ++GMPF+E
Sbjct: 157 IVTNAKTDSEGFYLLEVLGMPFKE 180

[Close]

BLAST of Cucsat.G1052.T3 vs. ExPASy Swiss-Prot
Match: B8HMR6 (50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rplE PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.0e-27
Identity = 54/84 (64.29%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MY+F DRLINL LPR RDF+G+N  SFDG GNYS+G+REQ +FPEI +D++ + RGMDV 
Sbjct: 97  MYAFFDRLINLALPRIRDFRGVNPKSFDGRGNYSLGLREQLIFPEISYDSIDQMRGMDVS 156

Query: 61  ITTTAETDQEAQRLLALMGMPFRE 85
           I TTA TD+E + LL +MGMPFR+
Sbjct: 157 IITTATTDEEGRALLKVMGMPFRD 180

[Close]

BLAST of Cucsat.G1052.T3 vs. NCBI nr
Match: XP_004133849.1 (50S ribosomal protein L5, chloroplastic [Cucumis sativus] >KGN56524.2 hypothetical protein Csa_011628 [Cucumis sativus])

HSP 1 Score: 224 bits (572), Expect = 1.06e-71
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 160 MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 219

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR
Sbjct: 220 ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 271

[Close]

BLAST of Cucsat.G1052.T3 vs. NCBI nr
Match: XP_008438004.1 (PREDICTED: 50S ribosomal protein L5, chloroplastic [Cucumis melo] >KAA0048949.1 50S ribosomal protein L5 [Cucumis melo var. makuwa])

HSP 1 Score: 222 bits (566), Expect = 8.63e-71
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 160 MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 219

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRES GAAAVMRKKKLKSHHFDSKSKGRARR
Sbjct: 220 ITTTAETDQEAQRLLALMGMPFRESAGAAAVMRKKKLKSHHFDSKSKGRARR 271

[Close]

BLAST of Cucsat.G1052.T3 vs. NCBI nr
Match: TYK17619.1 (50S ribosomal protein L5 [Cucumis melo var. makuwa])

HSP 1 Score: 222 bits (566), Expect = 8.63e-71
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 160 MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 219

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRES GAAAVMRKKKLKSHHFDSKSKGRARR
Sbjct: 220 ITTTAETDQEAQRLLALMGMPFRESAGAAAVMRKKKLKSHHFDSKSKGRARR 271

[Close]

BLAST of Cucsat.G1052.T3 vs. NCBI nr
Match: XP_038878175.1 (50S ribosomal protein L5, chloroplastic [Benincasa hispida])

HSP 1 Score: 221 bits (562), Expect = 3.28e-70
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNS+SFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 158 MYSFLDRLINLGLPRTRDFQGLNSNSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 217

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRESGG+ AVMRKKKLKSHHFDSKSKGRARR
Sbjct: 218 ITTTAETDQEAQRLLALMGMPFRESGGSVAVMRKKKLKSHHFDSKSKGRARR 269

[Close]

BLAST of Cucsat.G1052.T3 vs. NCBI nr
Match: XP_022147519.1 (50S ribosomal protein L5, chloroplastic [Momordica charantia])

HSP 1 Score: 213 bits (542), Expect = 3.55e-67
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDR+INLGLPRTRDFQG+NS+SFDGHGNYSIGIREQSVFPEIKFDT GKPRGMD+C
Sbjct: 158 MYSFLDRVINLGLPRTRDFQGVNSNSFDGHGNYSIGIREQSVFPEIKFDTFGKPRGMDIC 217

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRES G+A +MRKKKLKSHHFDSKSKGRARR
Sbjct: 218 ITTTAETDQEAQRLLALMGMPFRESSGSATLMRKKKLKSHHFDSKSKGRARR 269

[Close]

BLAST of Cucsat.G1052.T3 vs. ExPASy TrEMBL
Match: A0A0A0L3D6 (50S ribosomal protein L5, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_3G121660 PE=3 SV=1)

HSP 1 Score: 224 bits (572), Expect = 2.19e-72
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 133 MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 192

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR
Sbjct: 193 ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 244

[Close]

BLAST of Cucsat.G1052.T3 vs. ExPASy TrEMBL
Match: A0A5A7U637 (50S ribosomal protein L5, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001700 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 4.18e-71
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 160 MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 219

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRES GAAAVMRKKKLKSHHFDSKSKGRARR
Sbjct: 220 ITTTAETDQEAQRLLALMGMPFRESAGAAAVMRKKKLKSHHFDSKSKGRARR 271

[Close]

BLAST of Cucsat.G1052.T3 vs. ExPASy TrEMBL
Match: A0A5D3D3L2 (50S ribosomal protein L5, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004890 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 4.18e-71
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 160 MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 219

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRES GAAAVMRKKKLKSHHFDSKSKGRARR
Sbjct: 220 ITTTAETDQEAQRLLALMGMPFRESAGAAAVMRKKKLKSHHFDSKSKGRARR 271

[Close]

BLAST of Cucsat.G1052.T3 vs. ExPASy TrEMBL
Match: A0A1S3AVB4 (50S ribosomal protein L5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483250 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 4.18e-71
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 160 MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 219

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRES GAAAVMRKKKLKSHHFDSKSKGRARR
Sbjct: 220 ITTTAETDQEAQRLLALMGMPFRESAGAAAVMRKKKLKSHHFDSKSKGRARR 271

[Close]

BLAST of Cucsat.G1052.T3 vs. ExPASy TrEMBL
Match: A0A6J1D186 (50S ribosomal protein L5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111016423 PE=3 SV=1)

HSP 1 Score: 213 bits (542), Expect = 1.72e-67
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDR+INLGLPRTRDFQG+NS+SFDGHGNYSIGIREQSVFPEIKFDT GKPRGMD+C
Sbjct: 158 MYSFLDRVINLGLPRTRDFQGVNSNSFDGHGNYSIGIREQSVFPEIKFDTFGKPRGMDIC 217

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRES G+A +MRKKKLKSHHFDSKSKGRARR
Sbjct: 218 ITTTAETDQEAQRLLALMGMPFRESSGSATLMRKKKLKSHHFDSKSKGRARR 269

[Close]

BLAST of Cucsat.G1052.T3 vs. TAIR 10
Match: AT4G01310.1 (Ribosomal L5P family protein )

HSP 1 Score: 177.6 bits (449), Expect = 5.7e-45
Identity = 83/111 (74.77%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINL LPRTRDFQG++ SSFDG+GNYSIG+++Q VFPEI+FD +GK RGMDVC
Sbjct: 151 MYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRFDAVGKTRGMDVC 210

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAA--AVMRKKKLKSHHFDSKSKGR 110
           I+TTA++DQE Q+LLALMGMPFRE GG +  A++RKKKLKSHHFD+K KG+
Sbjct: 211 ISTTAKSDQEGQKLLALMGMPFREGGGGSTGAIVRKKKLKSHHFDAKGKGK 261

The following BLAST results are available for this feature:

BLAST of Cucsat.G1052.T3 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04603	8.1e-44	74.77	50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL5 ...	[more]
P82192	5.2e-43	77.06	50S ribosomal protein L5, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL5 PE=...	[more]
Q9ZST0	4.7e-36	65.14	50S ribosomal protein L5, chloroplastic OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q9MUU5	1.1e-27	64.29	50S ribosomal protein L5, chloroplastic OS=Mesostigma viride OX=41882 GN=rpl5 PE...	[more]
B8HMR6	4.0e-27	64.29	50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395...	[more]

BLAST of Cucsat.G1052.T3 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133849.1	1.06e-71	100.00	50S ribosomal protein L5, chloroplastic [Cucumis sativus] >KGN56524.2 hypothetic...	[more]
XP_008438004.1	8.63e-71	99.11	PREDICTED: 50S ribosomal protein L5, chloroplastic [Cucumis melo] >KAA0048949.1 ...	[more]
TYK17619.1	8.63e-71	99.11	50S ribosomal protein L5 [Cucumis melo var. makuwa]	[more]
XP_038878175.1	3.28e-70	97.32	50S ribosomal protein L5, chloroplastic [Benincasa hispida]	[more]
XP_022147519.1	3.55e-67	91.96	50S ribosomal protein L5, chloroplastic [Momordica charantia]	[more]

BLAST of Cucsat.G1052.T3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3D6	2.19e-72	100.00	50S ribosomal protein L5, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_3G1216...	[more]
A0A5A7U637	4.18e-71	99.11	50S ribosomal protein L5, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3D3L2	4.18e-71	99.11	50S ribosomal protein L5, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3AVB4	4.18e-71	99.11	50S ribosomal protein L5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483250 ...	[more]
A0A6J1D186	1.72e-67	91.96	50S ribosomal protein L5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of Cucsat.G1052.T3 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01310.1	5.7e-45	74.77	Ribosomal L5P family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031309	Ribosomal protein L5, C-terminal	PFAM	PF00673	Ribosomal_L5_C	coord: 1..82 e-value: 3.1E-29 score: 101.0
IPR022803	Ribosomal protein L5 domain superfamily	GENE3D	3.30.1440.10		coord: 1..84 e-value: 7.1E-32 score: 112.3
IPR022803	Ribosomal protein L5 domain superfamily	SUPERFAMILY	55282	RL5-like	coord: 1..83
None	No IPR available	PANTHER	PTHR11994:SF4	54S RIBOSOMAL PROTEIN L7, MITOCHONDRIAL	coord: 1..84
IPR002132	Ribosomal protein L5	PANTHER	PTHR11994	60S RIBOSOMAL PROTEIN L11-RELATED	coord: 1..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G1052	Cucsat.G1052	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1052.T3.E1	Cucsat.G1052.T3.E1	exon
Cucsat.G1052.T3.E2	Cucsat.G1052.T3.E2	exon
Cucsat.G1052.T3.E3	Cucsat.G1052.T3.E3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1052.T3.C1	Cucsat.G1052.T3.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1052.T3	Cucsat.G1052.T3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003729	mRNA binding