Cucsat.G1052 (gene) Cucumber (B10) v3

Overview
NameCucsat.G1052
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description50S ribosomal protein L5, chloroplastic
Locationctg1: 7189676 .. 7191777 (+)
RNA-Seq ExpressionCucsat.G1052
SyntenyCucsat.G1052
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAGTAACACGAGGGTATAGAAGGAATTTGGAAATTGAGAAAAAACTCATTTTGGCTGAACTGATCCTATACTCCCTTTCTTTCACTGAGCGAAGGAGAAACGTCTGTGAACTCCGATGGCCTCTTCTTCACTGTTGAGCTCCTCTACGTCGTCGTTCCATGGCCACTCCCCGTTCTTCTCTGTCCGTTTTGCTGCACCTGTTGGCTGCGGAAACCCTAGCAATGTAGCTCAATTGGGGATGAGAGTTAAAGCCTTGGCTAGTACCGGTGGCGCTATAGTGCTTGTGGAGAAGGCCGAGGCCGAGAAGGTTAACCGGCTTAAATCCAATTACCTTGAGAAAATCGTGCCGTTGCTTATGGACGAGTTCTCATACGATAATATCCACCAGGTATTCACAGCTTAATTTGGTAGGTGTTGATTGAATTATTGATTTATTTGCTCGATTGGTCGTTGGAGTTCGTCGGATTTTTAATTTGGAGGAAGTTGGGTTGGATTTTGATTGTTTCCGAAGTATAATTTGTTTGTTTATTAACTATTTCTTACAAATGCTAGAAGGTTCGGAAATTATTATTGGTTTTCTACTAAAAATTTCTAGATACAAGTACTTCTGTGAATTACGTACAGCCGCGTGGAAGATGAGGATTCTTGATGAAATAAAATACTCTGAAAACTGAGACGAAGTTCATATTTGTATTCAGCGGTGGTATTCTACAATACTTTTTCTTCTTCTCTTGGATTAAGTTGGAGTTTTCATTTTTGGTTGTGATTTTAATTAGTGGGTCTCAAAGAATTATGGCTTTAGTGTTTTTTTCTCATTCCATCTCAAAATTTGACAGCATATGACGACTAAGTACAAATTCTTCCAATGAAATATCCGTACCTTTTCTCTTAGGTCCCCAAAATTGAGAAGATAGTGGTGAATTGTGGTATTGGAGATGCCCAGCAGAATGCGAAGGGTTTGGAAGCTGCAATAAATGAATTGGCATCCATTACCGGACAACGACCCGTGAAAACACGTGCAAAGAAGTCCATTGCAACCTTCAAGATCAGGGAGGGTCAACCACTTGGGATTGCTGCAACCCTAAGGGGAAATGTGAGTTTCACTTGTTTTTTCTCATAGAATTTCCAACTAGTCGTTGTTTCTTTTGGTATTTTGGCTTCTGTTGTAGTTCTCAGTGCTATTTTGTTCAGCATATCTTGATATGGGAAATGCATTTTGATACTTGGATCTGGCTCTAATTTTCAAAATTTGTAGTCACTAACATTTCTTATGTTTTACATGTCTATCTTTCCAGTCTTGAATTATTACATTGATAATCGTCTTGAATTATTACATTGATGATCTGTATACGCTTTTATCGTAGTTGGTGTAGTGGATGTCTCTGGTATGATAATGATGTTAGGAATTCGATTGTTTGAGATAATAATATAAAAGAAGTGCGAAAGAATGACTTTGGAGGAGGGAGTTGCCCCTTCACGTCATGGGCTTGATACATTTTATCCTGAACTCGTCTAATGAAGAAGATTTGTGTGAAATTTGTCAACGAGTGGAAAGGACAAGATAGATGCAACGTTTTTTTGTGCATTGTTATAATTGAAGAGATCTCACATCATTAAATGGAAAAGTTTATGTGTGTGGCTCTAGGCATTTATGATCCGTAAACGCCTTAATCAGCATATTTCTCTGTTTAATGATGTTAGGAATTTGGTTCTTTGAGATAATTATCCAAACCAAGTGCAAAGGAATGGGCTCATGTATGGAGTTGCTCCTTCACAGGCTTGATACTCGTTTAGTGAACAATATTTTTGTGTCAATGTTAATTATGATGGAGTATGTGGAAGGACAAAATAATGGAAGATATCTTGCATCAATACATAGAAGAAGTTTTGGGTGTTGCTGCTGCCATTCGTGTCCTGAGTGTTAAAACAGCTTGATTTTTATGTTACTTGCTCGTTGATTGTACTTATAGGTGATGTACTCTTTCCTGGATCGTTTGATCAACTTGGGGCTGCCTAGAACAAGGGACTTTCAGGGACTGAACTCGAGTAGCTTTGATGGACATGGAAATTACTCCATTGGTATCCGTGAACAGAGTGTGTTCCCAGAAATAAAGTTCGACACACTTGGCAAACCGAGGGGGATGGACGTTTGTATCACAACAACAGCTGAAACCGATCAAGAAGCTCAGCGGCTCCTGGCTCTCATGGGAATGCCGTTCAGAGAGAGTGGTGGTGCCGCAGCTGTGATGCGGAAAAAGAAGCTAAAGTCCCACCATTTTGATTCCAAATCCAAGGGAAGAGCTCGGAGGTAATGAATTCATTTTTAGGAACAAGGCTTTTACATTTCCTCAATTCATCTGTTGTATCTTTACTAGAAAAACTATACTCTAGCTAATTTAGCTGGGTTGTATGCTATAATTTGATGAAGTTATAGAGTTTTGTTTATTAGATTACTTCCATTAGCTCTGAACGCCAACCGGCAATTTCGCAGTTCTGAATAGAGTTCTAGCACCGAATGCTGCATACGAACAGTATCCCCTTGGCCATTGAACAAACCATAGGCCTTGCTCTGAATAGAAAATACCTAAA

Coding sequence (CDS)

ATGGCCTCTTCTTCACTGTTGAGCTCCTCTACGTCGTCGTTCCATGGCCACTCCCCGTTCTTCTCTGTCCGTTTTGCTGCACCTGTTGGCTGCGGAAACCCTAGCAATGTAGCTCAATTGGGGATGAGAGTTAAAGCCTTGGCTAGTACCGGTGGCGCTATAGTGCTTGTGGAGAAGGCCGAGGCCGAGAAGGTTAACCGGCTTAAATCCAATTACCTTGAGAAAATCGTGCCGTTGCTTATGGACGAGTTCTCATACGATAATATCCACCAGGTCCCCAAAATTGAGAAGATAGTGGTGAATTGTGGTATTGGAGATGCCCAGCAGAATGCGAAGGGTTTGGAAGCTGCAATAAATGAATTGGCATCCATTACCGGACAACGACCCGTGAAAACACGTGCAAAGAAGTCCATTGCAACCTTCAAGATCAGGGAGGGTCAACCACTTGGGATTGCTGCAACCCTAAGGGGAAATGTGATGTACTCTTTCCTGGATCGTTTGATCAACTTGGGGCTGCCTAGAACAAGGGACTTTCAGGGACTGAACTCGAGTAGCTTTGATGGACATGGAAATTACTCCATTGGTATCCGTGAACAGAGTGTGTTCCCAGAAATAAAGTTCGACACACTTGGCAAACCGAGGGGGATGGACGTTTGTATCACAACAACAGCTGAAACCGATCAAGAAGCTCAGCGGCTCCTGGCTCTCATGGGAATGCCGTTCAGAGAGAGTGGTGGTGCCGCAGCTGTGATGCGGAAAAAGAAGCTAAAGTCCCACCATTTTGATTCCAAATCCAAGGGAAGAGCTCGGAGGTAA

Protein sequence

MASSSLLSSSTSSFHGHSPFFSVRFAAPVGCGNPSNVAQLGMRVKALASTGGAIVLVEKAEAEKVNRLKSNYLEKIVPLLMDEFSYDNIHQVPKIEKIVVNCGIGDAQQNAKGLEAAINELASITGQRPVKTRAKKSIATFKIREGQPLGIAATLRGNVMYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVCITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR
Homology
[Close]
BLAST of Cucsat.G1052 vs. ExPASy Swiss-Prot
Match: O04603 (50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL5 PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 8.1e-44
Identity = 83/111 (74.77%), Postives = 100/111 (90.09%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINL LPRTRDFQG++ SSFDG+GNYSIG+++Q VFPEI+FD +GK RGMDVC
Sbjct: 151 MYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRFDAVGKTRGMDVC 210

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAA--AVMRKKKLKSHHFDSKSKGR 110
           I+TTA++DQE Q+LLALMGMPFRE GG +  A++RKKKLKSHHFD+K KG+
Sbjct: 211 ISTTAKSDQEGQKLLALMGMPFREGGGGSTGAIVRKKKLKSHHFDAKGKGK 261

[Close]
BLAST of Cucsat.G1052 vs. ExPASy Swiss-Prot
Match: P82192 (50S ribosomal protein L5, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL5 PE=1 SV=3)

HSP 1 Score: 174.9 bits (442), Expect = 5.2e-43
Identity = 84/109 (77.06%), Postives = 97/109 (88.99%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINL LPRTRDFQG+N +SFDGHGNYS+G REQSVFPEIK + +GK RGMDVC
Sbjct: 149 MYSFLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVC 208

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGR 110
           ITTTA+TD+EA +LL+LMGMPFRE  G + ++RKKKLKSHHFD+K KGR
Sbjct: 209 ITTTAKTDKEAYKLLSLMGMPFREGSGPSTLVRKKKLKSHHFDAK-KGR 256

[Close]
BLAST of Cucsat.G1052 vs. ExPASy Swiss-Prot
Match: Q9ZST0 (50S ribosomal protein L5, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 151.8 bits (382), Expect = 4.7e-36
Identity = 71/109 (65.14%), Postives = 88/109 (80.73%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           M++FLDRLINLGLPRT DF G+N +SFDGHGN++IG+R+Q VFPEI ++  GK  GMDVC
Sbjct: 170 MFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPYEVGGKKNGMDVC 229

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGR 110
           I TTA+TD EA RLL L+GMPF E   ++ V+RKK+LK HHF SK +GR
Sbjct: 230 IVTTAKTDNEALRLLTLLGMPFAEHIKSSVVIRKKRLKRHHFMSKGRGR 278

[Close]
BLAST of Cucsat.G1052 vs. ExPASy Swiss-Prot
Match: Q9MUU5 (50S ribosomal protein L5, chloroplastic OS=Mesostigma viride OX=41882 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-27
Identity = 54/84 (64.29%), Postives = 69/84 (82.14%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MY+FLDRLINL LPR RDFQG++S SFDGHGNY++G++EQ +FPEI +D + K RGMD+C
Sbjct: 97  MYAFLDRLINLALPRIRDFQGVSSKSFDGHGNYNLGLKEQLMFPEIDYDQIDKIRGMDIC 156

Query: 61  ITTTAETDQEAQRLLALMGMPFRE 85
           I T A+TD E   LL ++GMPF+E
Sbjct: 157 IVTNAKTDSEGFYLLEVLGMPFKE 180

[Close]
BLAST of Cucsat.G1052 vs. ExPASy Swiss-Prot
Match: B8HMR6 (50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rplE PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.0e-27
Identity = 54/84 (64.29%), Postives = 68/84 (80.95%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MY+F DRLINL LPR RDF+G+N  SFDG GNYS+G+REQ +FPEI +D++ + RGMDV 
Sbjct: 97  MYAFFDRLINLALPRIRDFRGVNPKSFDGRGNYSLGLREQLIFPEISYDSIDQMRGMDVS 156

Query: 61  ITTTAETDQEAQRLLALMGMPFRE 85
           I TTA TD+E + LL +MGMPFR+
Sbjct: 157 IITTATTDEEGRALLKVMGMPFRD 180

[Close]
BLAST of Cucsat.G1052 vs. NCBI nr
Match: XP_004133849.1 (50S ribosomal protein L5, chloroplastic [Cucumis sativus] >KGN56524.2 hypothetical protein Csa_011628 [Cucumis sativus])

HSP 1 Score: 224 bits (572), Expect = 1.06e-71
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 160 MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 219

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR
Sbjct: 220 ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 271

[Close]
BLAST of Cucsat.G1052 vs. NCBI nr
Match: XP_008438004.1 (PREDICTED: 50S ribosomal protein L5, chloroplastic [Cucumis melo] >KAA0048949.1 50S ribosomal protein L5 [Cucumis melo var. makuwa])

HSP 1 Score: 222 bits (566), Expect = 8.63e-71
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 160 MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 219

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRES GAAAVMRKKKLKSHHFDSKSKGRARR
Sbjct: 220 ITTTAETDQEAQRLLALMGMPFRESAGAAAVMRKKKLKSHHFDSKSKGRARR 271

[Close]
BLAST of Cucsat.G1052 vs. NCBI nr
Match: TYK17619.1 (50S ribosomal protein L5 [Cucumis melo var. makuwa])

HSP 1 Score: 222 bits (566), Expect = 8.63e-71
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 160 MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 219

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRES GAAAVMRKKKLKSHHFDSKSKGRARR
Sbjct: 220 ITTTAETDQEAQRLLALMGMPFRESAGAAAVMRKKKLKSHHFDSKSKGRARR 271

[Close]
BLAST of Cucsat.G1052 vs. NCBI nr
Match: XP_038878175.1 (50S ribosomal protein L5, chloroplastic [Benincasa hispida])

HSP 1 Score: 221 bits (562), Expect = 3.28e-70
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNS+SFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 158 MYSFLDRLINLGLPRTRDFQGLNSNSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 217

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRESGG+ AVMRKKKLKSHHFDSKSKGRARR
Sbjct: 218 ITTTAETDQEAQRLLALMGMPFRESGGSVAVMRKKKLKSHHFDSKSKGRARR 269

[Close]
BLAST of Cucsat.G1052 vs. NCBI nr
Match: XP_022147519.1 (50S ribosomal protein L5, chloroplastic [Momordica charantia])

HSP 1 Score: 213 bits (542), Expect = 3.55e-67
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDR+INLGLPRTRDFQG+NS+SFDGHGNYSIGIREQSVFPEIKFDT GKPRGMD+C
Sbjct: 158 MYSFLDRVINLGLPRTRDFQGVNSNSFDGHGNYSIGIREQSVFPEIKFDTFGKPRGMDIC 217

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRES G+A +MRKKKLKSHHFDSKSKGRARR
Sbjct: 218 ITTTAETDQEAQRLLALMGMPFRESSGSATLMRKKKLKSHHFDSKSKGRARR 269

[Close]
BLAST of Cucsat.G1052 vs. ExPASy TrEMBL
Match: A0A0A0L3D6 (50S ribosomal protein L5, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_3G121660 PE=3 SV=1)

HSP 1 Score: 224 bits (572), Expect = 2.19e-72
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 133 MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 192

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR
Sbjct: 193 ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 244

[Close]
BLAST of Cucsat.G1052 vs. ExPASy TrEMBL
Match: A0A5A7U637 (50S ribosomal protein L5, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001700 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 4.18e-71
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 160 MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 219

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRES GAAAVMRKKKLKSHHFDSKSKGRARR
Sbjct: 220 ITTTAETDQEAQRLLALMGMPFRESAGAAAVMRKKKLKSHHFDSKSKGRARR 271

[Close]
BLAST of Cucsat.G1052 vs. ExPASy TrEMBL
Match: A0A5D3D3L2 (50S ribosomal protein L5, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004890 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 4.18e-71
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 160 MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 219

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRES GAAAVMRKKKLKSHHFDSKSKGRARR
Sbjct: 220 ITTTAETDQEAQRLLALMGMPFRESAGAAAVMRKKKLKSHHFDSKSKGRARR 271

[Close]
BLAST of Cucsat.G1052 vs. ExPASy TrEMBL
Match: A0A1S3AVB4 (50S ribosomal protein L5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483250 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 4.18e-71
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC
Sbjct: 160 MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 219

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRES GAAAVMRKKKLKSHHFDSKSKGRARR
Sbjct: 220 ITTTAETDQEAQRLLALMGMPFRESAGAAAVMRKKKLKSHHFDSKSKGRARR 271

[Close]
BLAST of Cucsat.G1052 vs. ExPASy TrEMBL
Match: A0A6J1D186 (50S ribosomal protein L5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111016423 PE=3 SV=1)

HSP 1 Score: 213 bits (542), Expect = 1.72e-67
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDR+INLGLPRTRDFQG+NS+SFDGHGNYSIGIREQSVFPEIKFDT GKPRGMD+C
Sbjct: 158 MYSFLDRVINLGLPRTRDFQGVNSNSFDGHGNYSIGIREQSVFPEIKFDTFGKPRGMDIC 217

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAAAVMRKKKLKSHHFDSKSKGRARR 112
           ITTTAETDQEAQRLLALMGMPFRES G+A +MRKKKLKSHHFDSKSKGRARR
Sbjct: 218 ITTTAETDQEAQRLLALMGMPFRESSGSATLMRKKKLKSHHFDSKSKGRARR 269

[Close]
BLAST of Cucsat.G1052 vs. TAIR 10
Match: AT4G01310.1 (Ribosomal L5P family protein )

HSP 1 Score: 177.6 bits (449), Expect = 5.7e-45
Identity = 83/111 (74.77%), Postives = 100/111 (90.09%), Query Frame = 0 

Query: 1   MYSFLDRLINLGLPRTRDFQGLNSSSFDGHGNYSIGIREQSVFPEIKFDTLGKPRGMDVC 60
           MYSFLDRLINL LPRTRDFQG++ SSFDG+GNYSIG+++Q VFPEI+FD +GK RGMDVC
Sbjct: 151 MYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRFDAVGKTRGMDVC 210

Query: 61  ITTTAETDQEAQRLLALMGMPFRESGGAA--AVMRKKKLKSHHFDSKSKGR 110
           I+TTA++DQE Q+LLALMGMPFRE GG +  A++RKKKLKSHHFD+K KG+
Sbjct: 211 ISTTAKSDQEGQKLLALMGMPFREGGGGSTGAIVRKKKLKSHHFDAKGKGK 261

The following BLAST results are available for this feature:
BLAST of Cucsat.G1052 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O046038.1e-4474.7750S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL5 ... [more]
P821925.2e-4377.0650S ribosomal protein L5, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL5 PE=... [more]
Q9ZST04.7e-3665.1450S ribosomal protein L5, chloroplastic OS=Oryza sativa subsp. japonica OX=39947... [more]
Q9MUU51.1e-2764.2950S ribosomal protein L5, chloroplastic OS=Mesostigma viride OX=41882 GN=rpl5 PE... [more]
B8HMR64.0e-2764.2950S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395... [more]
BLAST of Cucsat.G1052 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004133849.11.06e-71100.0050S ribosomal protein L5, chloroplastic [Cucumis sativus] >KGN56524.2 hypothetic... [more]
XP_008438004.18.63e-7199.11PREDICTED: 50S ribosomal protein L5, chloroplastic [Cucumis melo] >KAA0048949.1 ... [more]
TYK17619.18.63e-7199.1150S ribosomal protein L5 [Cucumis melo var. makuwa][more]
XP_038878175.13.28e-7097.3250S ribosomal protein L5, chloroplastic [Benincasa hispida][more]
XP_022147519.13.55e-6791.9650S ribosomal protein L5, chloroplastic [Momordica charantia][more]
BLAST of Cucsat.G1052 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3D62.19e-72100.0050S ribosomal protein L5, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_3G1216... [more]
A0A5A7U6374.18e-7199.1150S ribosomal protein L5, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3D3L24.18e-7199.1150S ribosomal protein L5, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A1S3AVB44.18e-7199.1150S ribosomal protein L5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483250 ... [more]
A0A6J1D1861.72e-6791.9650S ribosomal protein L5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111... [more]
BLAST of Cucsat.G1052 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G01310.15.7e-4574.77Ribosomal L5P family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031309Ribosomal protein L5, C-terminalPFAMPF00673Ribosomal_L5_Ccoord: 1..82
e-value: 3.1E-29
score: 101.0
IPR022803Ribosomal protein L5 domain superfamilyGENE3D3.30.1440.10coord: 1..84
e-value: 7.1E-32
score: 112.3
IPR022803Ribosomal protein L5 domain superfamilySUPERFAMILY55282RL5-likecoord: 1..83
NoneNo IPR availablePANTHERPTHR11994:SF454S RIBOSOMAL PROTEIN L7, MITOCHONDRIALcoord: 1..84
IPR002132Ribosomal protein L5PANTHERPTHR1199460S RIBOSOMAL PROTEIN L11-RELATEDcoord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G1052.T2Cucsat.G1052.T2mRNA
Cucsat.G1052.T1Cucsat.G1052.T1mRNA
Cucsat.G1052.T3Cucsat.G1052.T3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome