Cucsat.G1016.T8 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G1016.T8
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionserine/arginine-rich splicing factor RS31-like
Locationctg1: 6735223 .. 6738951 (+)
RNA-Seq ExpressionCucsat.G1016.T8
SyntenyCucsat.G1016.T8
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTCGACGGTAGTCTTGCATAGGAAAGTCAGATAATCGGACGGTGTGAAAGGAAGAACATCAAGAGTACCGGTTTTGCTTTGCGGTTTAAAATGAATCGATTTGCGTCATTAGGGCTTCTTTGAAAAAAGAAAAGACACAGCCTTTCTCTTCCTCTCTCTCCTAGGGTTTCTCTGTTCTGTTCGAATCCGAGAATCTCCAAGGTTTGTTCTCTTCAATCCTTTGGTAATTGATCCAATCGATCGTTTTACTTTTCGTTTCTGGTCAAACCCCCAAACTAAGTTATTTCCTTTCTTTCATCGTTTGATTCGAAAGAACATAGGTCGATTCATGTCGATGAAGTTGTTTATTATATATATATATACACACACATATATGGAGGAAGCTGTTATCTTTTTTTCACTTTTCGTCTGATTAACGTTCGAGCTTATTGATTTCGCTTTGTTTCGGTTTCGTATTTTCTACAGTACGATCTTTTGTAGCAACGATGAGGCCGATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGCTTATTCTCTAAATATGGGAGAGTTGAAAGGATCGACATGAAATCTGGTATATTGCAATTTCTTTAATGTAGTATGCCATTTTTAACAAAGATGTTAGTAAGTGGGTCATAACTTGTGCAGATTGTATTGTACGAAGGATCCCTTCTGTGGTCAGCTTTGAGTGAATTGATTGTCTTGAATATTGCTCTTAAAACCTTTTTTTTTTTGGTATTGCCATCGGTGGAATGAGTGTGTTGTAATGTGAAACTGTATTAAGATAATAGATGCACCAAAATGATCATGTTCATTTTGGTGTCATACGCATTGGATGTTGCATCTGGATTATTGATGTGTGTTTTAATCTGAAATCTTTGATGTTCTTGAAGAACCATACTCCTCTTGGCTCACAGTTGTCTGCATGTATGCATTGATGGTTAGTATTGTCAAGTATAATTCCTACTTTTAAGCTTCATAGCTTGGAGTTTTGTTTGGTTTTTTTTTTTTCTAACATTCTTACATGTGGATGTTTGTGCATTCACTGGAATCAGCTTACGTTTTCCTTGCTAACTGAAATTGCTTACTTTGGGCATGAGTTTTAAATGATCTTTATTTTCTGGAAAATATCCTTGGTCCTCACCCACCTTGCCTTACATCGTATGAAGTTATATGTAAATCAACGATTTTGGAAATTTTGGCTATAGGGTTTATTAAATTGTGGTATTATAGTGCAAGGCTTCTCCACAGATACTAACACTAAGTGTAAAAGTAATATCACGTTTTTATGATTAATACTAAAACCGATGTTTTTTACATAATAAAATCCAGTTCAGTGACATGGATGCATAGCTATTATGCTGTGAATATCATCCAATGGTCCATTTTTCTGATGAAAACTTAATGGCAGGCACAATTGCTATTTTTATGGGGAAAACCTCCATATAAGATGTTTCTTTTGACGCAGGAATTTCTTCTAAGGAAAATGAGCCAAGCTCCTATCTGGGCTCACCACCATGACACCATCTGTGCATTAAAATTAATTTGGAAGGAAACTTCCTGCTTGCCTGCTTACCTTCACCTACAGATAGCATCATCCTGATTTTTCTTCAATCAATCATTCGTCATTCATCTACCTCATCACTTAAGTTGCAATACACCAGAATCGTCTTAATGGATTGATCTTTATCTCATGCCTCATCAATTAAGTTGCAATTCATCAGAATCGTGTTAATGGATTGATCTTTATCTCATGCCTTGCCTATCTATCACCACTGATCATAGGACATCACTGAAATCTGATCATGCCTTCCATATGATAATAGTGGCTGAATGAAATCTATCATGCCTTCCATTTGATAATAGTGGCTGAATGAAATCTGTCATGCCATGCCTTCCATATCTGAACTCGTGCTGTGTGAAGGTGAAGGATAGTTGAATTTTTGGATTAAAACCTTAAGTAGGCAACCATCTTAGTCCATCATGCAACGTCTCTACCGCTATATGTGCATCAGTCCTCCCATATTTGCAGGTGTTGTATTTTTTATAGTTTATCCCAGGGAGAGAATTCAAGGGGCTGAGTGACAATACCTGCTTAATGGATGATGCTTCAACAGCTTACCAGTTTTGTATGTCTAATTGTTATTATTTGGCAGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCCATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGGCGCAGATTGTCTGTGGAATGGGCCAGGGTAGACCTCTCTCACTACGTTTTTCTGTGCCCTTCGTTCTTCCTTTTGAGTTTATGCATGTTAGAAGCTGTTTTTTTTTTTTCATGATTAGTAGATAGGTATTTTGTTCTAACTTTTGGGTTGGGTTGGTTTAGGGTGAACGAGGTCGTCATCGCGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATAAATTTCGACCCCATACGTACAAGAGTACGTGATATTGAAAGACACTTCGAACCTTATGGGAAAGTTCTCAATGTTCGGATCAGAAGGAACTTTGCATTTGTACAATTTGAAACGCAGGAGGATGCCACAAAAGCCCTTGAGTGTACCCACATGAGGTAAGCTTTGTCTTGATTCTCCTGCATGCGTGCTCTTTCTATTTGGTGTATTTATTTTCTTCTCTCTTATGGACGTGAAGTATTTGTACTGTGCCTTATAATTTTGCAGCAAGATACTAGACAGGGTTGTATCAGTTGAATATGCTTTGAGGGATGATGGTGAGAGGGGTGATCCTTTTGATGAAAGCCCTCGAAGAGCAGGTGGTTATGGGCGACCAGGGGATAGTCCCTACCGGAGGTCTCCAAGTCCGGTGTTTCGCCGTCGACCAAGTCCTGACTATGGGCGAGCTCATAGCCCTGCTTATGACAGATATAATGGACCTTATGAACGACGTAGGAGTCCTGATTATGGTAGGAATCGAAGCCCTGAATACGGTGGTAGATTTCGCAGGTATTTATTGTTCTTTGATAGTTTGCACAGCCTGCCTTTTGAGTTACCATAGCTTGTAGTTGAAGCTAACTGTCCGTTTTCCTGATGTCTTTGTTGGCAGCCGTTCACCCATTCGAAGGTCAAGAACCTGAAGGAAATCTATTGTTGAATTTTCAGTAGTTATGTTCTTAGGTTTAGGTCTGTGGAGTGTGTTAAGAGATGGTTACAAGTTCCTGTACAACCCTCGTATTTTTAACTCTTTGGAAAAACAACTGTTGGTAGATTTGAGATGTTGAAGGAAACACTTTCTATCTGTTTTTAACTAGTGGGTTTTATCCAACAAGTTCCGGCTATCACGTCTTCCCAATTGTTCACTTATCAACAATCAAATCCAGCATCAATGCAATTGAAGTGTTAATTCCTGTATCGAAATATAGGGGTTTCTACAAATATTTTGCATTGATTTTGAATATGCTAGAAAATACAGTTTTGATTACTTTGTATCATTGATAGACGGGTTTGAAGAAATTATAATCTATCTCTTATGGCTCAACCTTCATAAATTGAAGGTGTTTGAAGGATAAGGTGGCAGTAGAGATTTTAATGTAGATGTAAGCAAAACAGTGCAATAGGTCCCATCTTAATTTGCCTCTCCATCAATCTGAATGGTCACCTGCTTCTTCTTTCAGTCTCTCTGAATGGCCAAAC

Coding sequence (CDS)

ATGGATGATGCTTCAACAGCTTACCAGTTTTGTATGTCTAATTGTTATTATTTGGCAGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCCATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGGCGCAGATTGTCTGTGGAATGGGCCAGGGGTGAACGAGGTCGTCATCGCGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATAAATTTCGACCCCATACGTACAAGAGTACGTGATATTGAAAGACACTTCGAACCTTATGGGAAAGTTCTCAATGTTCGGATCAGAAGGAACTTTGCATTTGTACAATTTGAAACGCAGGAGGATGCCACAAAAGCCCTTGAGTGTACCCACATGAGGTAA

Protein sequence

MDDASTAYQFCMSNCYYLAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMR
Homology
[Close]
BLAST of Cucsat.G1016.T8 vs. ExPASy Swiss-Prot
Match: P92964 (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS31 PE=1 SV=2)

HSP 1 Score: 191.0 bits (484), Expect = 8.4e-48
Identity = 90/113 (79.65%), Postives = 102/113 (90.27%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           +G+AFVYFEDERDAEDAIR LDN PFGY++RRLSVEWA+GERGR R  +K+ +N +PTKT
Sbjct: 35  SGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKT 94

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECT 132
           LFVINFDPIRT+  DIE+HFEPYGKV NVRIRRNF+FVQFETQEDATKALE T
Sbjct: 95  LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEAT 147

[Close]
BLAST of Cucsat.G1016.T8 vs. ExPASy Swiss-Prot
Match: Q9ZPX8 (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS31A PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 9.3e-47
Identity = 93/117 (79.49%), Postives = 104/117 (88.89%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRP 78
           +G+AFVYFEDERDAEDAIR  DN  FGY RR+LSVEWA+   GERG+ RDG K+++NQRP
Sbjct: 35  SGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRP 94

Query: 79  TKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTH 133
           TKTLFVINFDPIRTR RD+ERHFEPYGKVLNVR+RRNFAFVQF TQEDATKAL+ TH
Sbjct: 95  TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTH 150

[Close]
BLAST of Cucsat.G1016.T8 vs. ExPASy Swiss-Prot
Match: P92965 (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS40 PE=1 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 6.7e-37
Identity = 77/118 (65.25%), Postives = 92/118 (77.97%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERG---RHRDGS-KSMANQR 78
           AGFAFVY EDERDAEDAIR LD   FG   RRL VEW + ERG   R   GS +S ++ R
Sbjct: 35  AGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMR 94

Query: 79  PTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTH 133
           P+KTLFVINFD   TR RD+E+HFEPYGK++NVRIRRNFAF+Q+E QEDAT+AL+ ++
Sbjct: 95  PSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASN 152

[Close]
BLAST of Cucsat.G1016.T8 vs. ExPASy Swiss-Prot
Match: P92966 (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS41 PE=1 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 8.8e-37
Identity = 75/117 (64.10%), Postives = 89/117 (76.07%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER---GRHRDGSKSMANQRP 78
           AGFAFVY EDERDAEDAIR LD   +G   RRL VEW + +R   GR     +S +  RP
Sbjct: 35  AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRP 94

Query: 79  TKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTH 133
           +KTLFVINFD   TR RD+ERHFEPYGK++NVRIRRNFAF+Q+E QEDAT+AL+ T+
Sbjct: 95  SKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATN 151

[Close]
BLAST of Cucsat.G1016.T8 vs. ExPASy Swiss-Prot
Match: Q0VCY7 (Serine/arginine-rich splicing factor 1 OS=Bos taurus OX=9913 GN=SRSF1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.0e-06
Identity = 40/119 (33.61%), Postives = 55/119 (46.22%), Query Frame = 0 

Query: 21  FAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----- 80
           FAFV FED RDAEDA+ G D   + YD  RL VE+ R  RG  R G        P     
Sbjct: 56  FAFVEFEDPRDAEDAVYGRDG--YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYG 115

Query: 81  -----TKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRN-FAFVQFETQEDATKAL 129
                ++   V++  P     +D++ H    G V    + R+    V+F  +ED T A+
Sbjct: 116 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAV 172

[Close]
BLAST of Cucsat.G1016.T8 vs. NCBI nr
Match: XP_011650664.1 (serine/arginine-rich splicing factor RS31 isoform X2 [Cucumis sativus])

HSP 1 Score: 275 bits (703), Expect = 1.06e-91
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MDDASTAYQFCMSNCYYLAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER 60
           MDDASTAYQFCMSNCYYLAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER
Sbjct: 1   MDDASTAYQFCMSNCYYLAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER 60

Query: 61  GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFET 120
           GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFET
Sbjct: 61  GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFET 120

Query: 121 QEDATKALECTHM 133
           QEDATKALECTHM
Sbjct: 121 QEDATKALECTHM 133

[Close]
BLAST of Cucsat.G1016.T8 vs. NCBI nr
Match: XP_038893498.1 (serine/arginine-rich splicing factor RS31 isoform X2 [Benincasa hispida])

HSP 1 Score: 273 bits (699), Expect = 4.30e-91
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MDDASTAYQFCMSNCYYLAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER 60
           MDDASTAYQFC+SNCYYLAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER
Sbjct: 1   MDDASTAYQFCISNCYYLAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER 60

Query: 61  GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFET 120
           GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFET
Sbjct: 61  GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFET 120

Query: 121 QEDATKALECTHM 133
           QEDATKALECTHM
Sbjct: 121 QEDATKALECTHM 133

[Close]
BLAST of Cucsat.G1016.T8 vs. NCBI nr
Match: XP_011650665.1 (serine/arginine-rich splicing factor RS31 isoform X3 [Cucumis sativus] >XP_016899085.1 PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X2 [Cucumis melo])

HSP 1 Score: 236 bits (603), Expect = 1.57e-76
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 75

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM 133
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM
Sbjct: 76  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM 130

[Close]
BLAST of Cucsat.G1016.T8 vs. NCBI nr
Match: XP_038893575.1 (serine/arginine-rich splicing factor RS31 isoform X3 [Benincasa hispida])

HSP 1 Score: 236 bits (603), Expect = 1.57e-76
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 75

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM 133
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM
Sbjct: 76  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM 130

[Close]
BLAST of Cucsat.G1016.T8 vs. NCBI nr
Match: XP_038893478.1 (serine/arginine-rich splicing factor RS31 isoform X1 [Benincasa hispida])

HSP 1 Score: 235 bits (600), Expect = 8.29e-76
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           +GFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 35  SGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 94

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM 133
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM
Sbjct: 95  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM 149

[Close]
BLAST of Cucsat.G1016.T8 vs. ExPASy TrEMBL
Match: A0A0A0K5S0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239560 PE=4 SV=1)

HSP 1 Score: 238 bits (608), Expect = 6.42e-79
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 75

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMR 134
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMR
Sbjct: 76  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMR 131

[Close]
BLAST of Cucsat.G1016.T8 vs. ExPASy TrEMBL
Match: A0A1S4DTR0 (serine/arginine-rich splicing factor RS31-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483164 PE=4 SV=1)

HSP 1 Score: 236 bits (603), Expect = 7.60e-77
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 75

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM 133
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM
Sbjct: 76  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM 130

[Close]
BLAST of Cucsat.G1016.T8 vs. ExPASy TrEMBL
Match: A0A5D3DBI0 (Serine/arginine-rich splicing factor RS31 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00820 PE=4 SV=1)

HSP 1 Score: 235 bits (600), Expect = 4.01e-76
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           +GFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 35  SGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 94

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM 133
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM
Sbjct: 95  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM 149

[Close]
BLAST of Cucsat.G1016.T8 vs. ExPASy TrEMBL
Match: A0A0A0L8H4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119350 PE=4 SV=1)

HSP 1 Score: 235 bits (600), Expect = 4.01e-76
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           +GFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 35  SGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 94

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM 133
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM
Sbjct: 95  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM 149

[Close]
BLAST of Cucsat.G1016.T8 vs. ExPASy TrEMBL
Match: A0A1S3AUZ7 (serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483164 PE=4 SV=1)

HSP 1 Score: 235 bits (600), Expect = 4.01e-76
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           +GFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 35  SGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 94

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM 133
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM
Sbjct: 95  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHM 149

[Close]
BLAST of Cucsat.G1016.T8 vs. TAIR 10
Match: AT3G61860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 191.0 bits (484), Expect = 6.0e-49
Identity = 90/113 (79.65%), Postives = 102/113 (90.27%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           +G+AFVYFEDERDAEDAIR LDN PFGY++RRLSVEWA+GERGR R  +K+ +N +PTKT
Sbjct: 35  SGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKT 94

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECT 132
           LFVINFDPIRT+  DIE+HFEPYGKV NVRIRRNF+FVQFETQEDATKALE T
Sbjct: 95  LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEAT 147

[Close]
BLAST of Cucsat.G1016.T8 vs. TAIR 10
Match: AT2G46610.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 188.7 bits (478), Expect = 3.0e-48
Identity = 94/117 (80.34%), Postives = 104/117 (88.89%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRP 78
           AG+AFVYFEDERDAEDAIR  DN  FGY RR+LSVEWA+   GERG+ RDG K+++NQRP
Sbjct: 9   AGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRP 68

Query: 79  TKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTH 133
           TKTLFVINFDPIRTR RD+ERHFEPYGKVLNVR+RRNFAFVQF TQEDATKAL+ TH
Sbjct: 69  TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTH 124

[Close]
BLAST of Cucsat.G1016.T8 vs. TAIR 10
Match: AT2G46610.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 187.6 bits (475), Expect = 6.6e-48
Identity = 93/117 (79.49%), Postives = 104/117 (88.89%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRP 78
           +G+AFVYFEDERDAEDAIR  DN  FGY RR+LSVEWA+   GERG+ RDG K+++NQRP
Sbjct: 35  SGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRP 94

Query: 79  TKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTH 133
           TKTLFVINFDPIRTR RD+ERHFEPYGKVLNVR+RRNFAFVQF TQEDATKAL+ TH
Sbjct: 95  TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTH 150

[Close]
BLAST of Cucsat.G1016.T8 vs. TAIR 10
Match: AT4G25500.1 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 154.8 bits (390), Expect = 4.8e-38
Identity = 77/118 (65.25%), Postives = 92/118 (77.97%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERG---RHRDGS-KSMANQR 78
           AGFAFVY EDERDAEDAIR LD   FG   RRL VEW + ERG   R   GS +S ++ R
Sbjct: 35  AGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMR 94

Query: 79  PTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTH 133
           P+KTLFVINFD   TR RD+E+HFEPYGK++NVRIRRNFAF+Q+E QEDAT+AL+ ++
Sbjct: 95  PSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASN 152

[Close]
BLAST of Cucsat.G1016.T8 vs. TAIR 10
Match: AT4G25500.4 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 154.8 bits (390), Expect = 4.8e-38
Identity = 77/118 (65.25%), Postives = 92/118 (77.97%), Query Frame = 0 

Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERG---RHRDGS-KSMANQR 78
           AGFAFVY EDERDAEDAIR LD   FG   RRL VEW + ERG   R   GS +S ++ R
Sbjct: 35  AGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMR 94

Query: 79  PTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTH 133
           P+KTLFVINFD   TR RD+E+HFEPYGK++NVRIRRNFAF+Q+E QEDAT+AL+ ++
Sbjct: 95  PSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASN 152

The following BLAST results are available for this feature:
BLAST of Cucsat.G1016.T8 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P929648.4e-4879.65Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS3... [more]
Q9ZPX89.3e-4779.49Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS... [more]
P929656.7e-3765.25Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS4... [more]
P929668.8e-3764.10Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS4... [more]
Q0VCY78.0e-0633.61Serine/arginine-rich splicing factor 1 OS=Bos taurus OX=9913 GN=SRSF1 PE=2 SV=1[more]
BLAST of Cucsat.G1016.T8 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011650664.11.06e-91100.00serine/arginine-rich splicing factor RS31 isoform X2 [Cucumis sativus][more]
XP_038893498.14.30e-9199.25serine/arginine-rich splicing factor RS31 isoform X2 [Benincasa hispida][more]
XP_011650665.11.57e-76100.00serine/arginine-rich splicing factor RS31 isoform X3 [Cucumis sativus] >XP_01689... [more]
XP_038893575.11.57e-76100.00serine/arginine-rich splicing factor RS31 isoform X3 [Benincasa hispida][more]
XP_038893478.18.29e-7699.13serine/arginine-rich splicing factor RS31 isoform X1 [Benincasa hispida][more]
BLAST of Cucsat.G1016.T8 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5S06.42e-79100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239560 PE=4 SV=1[more]
A0A1S4DTR07.60e-77100.00serine/arginine-rich splicing factor RS31-like isoform X2 OS=Cucumis melo OX=365... [more]
A0A5D3DBI04.01e-7699.13Serine/arginine-rich splicing factor RS31 isoform X2 OS=Cucumis melo var. makuwa... [more]
A0A0A0L8H44.01e-7699.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119350 PE=4 SV=1[more]
A0A1S3AUZ74.01e-7699.13serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucumis melo OX=365... [more]
BLAST of Cucsat.G1016.T8 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G61860.16.0e-4979.65RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G46610.23.0e-4880.34RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G46610.16.6e-4879.49RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G25500.14.8e-3865.25arginine/serine-rich splicing factor 35 [more]
AT4G25500.44.8e-3865.25arginine/serine-rich splicing factor 35 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 78..134
e-value: 9.3E-7
score: 38.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 79..131
e-value: 1.1E-11
score: 44.4
coord: 19..43
e-value: 3.8E-5
score: 23.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 77..134
score: 14.044155
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 20..58
score: 9.200421
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 17..70
e-value: 5.1E-10
score: 41.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 71..134
e-value: 5.5E-16
score: 60.5
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 13..133
IPR029537Arginine/serine-rich-splicing factor RSP31/31APANTHERPTHR23147:SF146SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATEDcoord: 13..133
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 19..131

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G1016Cucsat.G1016gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G1016.T8.E1Cucsat.G1016.T8.E1exon
Cucsat.G1016.T8.E2Cucsat.G1016.T8.E2exon
Cucsat.G1016.T8.E3Cucsat.G1016.T8.E3exon
Cucsat.G1016.T8.E4Cucsat.G1016.T8.E4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G1016.T8.C1Cucsat.G1016.T8.C1CDS
Cucsat.G1016.T8.C2Cucsat.G1016.T8.C2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G1016.T8Cucsat.G1016.T8-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0016020 membrane
cellular_component GO:0016607 nuclear speck
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0003723 RNA binding