Csor.00g302920.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g302920.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr18: 11451537 .. 11451896 (+)
Sequence length	360
RNA-Seq Expression	Csor.00g302920.m01
Synteny	Csor.00g302920.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAAAAGGATCAAGATCAATGTTCCCAAGGGCAAACATGCCCAATTTTGGCGAGACCAGTGGAAAGATGAAGTGGTTCTATCCTCCCATTTCCCTAAACTCTACCCTCTCTTGGGAAAGCAACTGGCTTTTAATAATCAATCCCGGATTCCCTCTTCTTGTTGGGACCTTATTGTCGGAAGGAATCCTAATGATGGAGGCTTAATGACTTCTCCTTGGGCACTAGAAGTGACTTCTGGGATATGGGGCAAGGACAAATCGATCTCTCCAAACACTCTGTATGGTGATCTCATAAAGGCTCTTCCTTCATTCCCTCTCTGGATAGCTTTACTTGCAATTGCCTCAGAACGCCCCTAA

mRNA sequence

ATGGTCAAAAGGATCAAGATCAATGTTCCCAAGGGCAAACATGCCCAATTTTGGCGAGACCAGTGGAAAGATGAAGTGGTTCTATCCTCCCATTTCCCTAAACTCTACCCTCTCTTGGGAAAGCAACTGGCTTTTAATAATCAATCCCGGATTCCCTCTTCTTGTTGGGACCTTATTGTCGGAAGGAATCCTAATGATGGAGGCTTAATGACTTCTCCTTGGGCACTAGAAGTGACTTCTGGGATATGGGGCAAGGACAAATCGATCTCTCCAAACACTCTGTATGGTGATCTCATAAAGGCTCTTCCTTCATTCCCTCTCTGGATAGCTTTACTTGCAATTGCCTCAGAACGCCCCTAA

Coding sequence (CDS)

ATGGTCAAAAGGATCAAGATCAATGTTCCCAAGGGCAAACATGCCCAATTTTGGCGAGACCAGTGGAAAGATGAAGTGGTTCTATCCTCCCATTTCCCTAAACTCTACCCTCTCTTGGGAAAGCAACTGGCTTTTAATAATCAATCCCGGATTCCCTCTTCTTGTTGGGACCTTATTGTCGGAAGGAATCCTAATGATGGAGGCTTAATGACTTCTCCTTGGGCACTAGAAGTGACTTCTGGGATATGGGGCAAGGACAAATCGATCTCTCCAAACACTCTGTATGGTGATCTCATAAAGGCTCTTCCTTCATTCCCTCTCTGGATAGCTTTACTTGCAATTGCCTCAGAACGCCCCTAA

Protein sequence

MVKRIKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSCWDLIVGRNPNDGGLMTSPWALEVTSGIWGKDKSISPNTLYGDLIKALPSFPLWIALLAIASERP

Homology

[Close]

BLAST of Csor.00g302920.m01 vs. NCBI nr
Match: KAG6573975.1 (hypothetical protein SDJN03_27862, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 252 bits (644), Expect = 1.04e-84
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MVKRIKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSCWDLIV 60
           MVKRIKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSCWDLIV
Sbjct: 1   MVKRIKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSCWDLIV 60

Query: 61  GRNPNDGGLMTSPWALEVTSGIWGKDKSISPNTLYGDLIKALPSFPLWIALLAIASERP 119
           GRNPNDGGLMTSPWALEVTSGIWGKDKSISPNTLYGDLIKALPSFPLWIALLAIASERP
Sbjct: 61  GRNPNDGGLMTSPWALEVTSGIWGKDKSISPNTLYGDLIKALPSFPLWIALLAIASERP 119

[Close]

BLAST of Csor.00g302920.m01 vs. NCBI nr
Match: RVX01787.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 49.7 bits (117), Expect = 5.20e-04
Identity = 31/81 (38.27%), Postives = 41/81 (50.62%), Query Frame = 0


Query: 5   IKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSC---WDLIVG 64
           IK  V KG   +FW DQW D VVLS  FP+L+ +   + A  N+    SS    W+L   
Sbjct: 249 IKFKVGKGTRVKFWTDQWCDNVVLSHSFPQLFEMAVNRNATVNEMWDLSSGQGGWNLRFH 308

Query: 65  RNPNDGGLMTSPWALEVTSGI 82
           RN ND       W L++  G+
Sbjct: 309 RNFND-------WELDLIRGL 322

[Close]

BLAST of Csor.00g302920.m01 vs. ExPASy TrEMBL
Match: A0A438IYM2 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_963 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.52e-04
Identity = 31/81 (38.27%), Postives = 41/81 (50.62%), Query Frame = 0


Query: 5   IKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSC---WDLIVG 64
           IK  V KG   +FW DQW D VVLS  FP+L+ +   + A  N+    SS    W+L   
Sbjct: 249 IKFKVGKGTRVKFWTDQWCDNVVLSHSFPQLFEMAVNRNATVNEMWDLSSGQGGWNLRFH 308

Query: 65  RNPNDGGLMTSPWALEVTSGI 82
           RN ND       W L++  G+
Sbjct: 309 RNFND-------WELDLIRGL 322

The following BLAST results are available for this feature:

BLAST of Csor.00g302920.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g302920.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573975.1	1.04e-84	100.00	hypothetical protein SDJN03_27862, partial [Cucurbita argyrosperma subsp. sorori...	[more]
RVX01787.1	5.20e-04	38.27	putative ribonuclease H protein [Vitis vinifera]	[more]

BLAST of Csor.00g302920.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438IYM2	2.52e-04	38.27	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_963 P...	[more]

BLAST of Csor.00g302920.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g302920	Csor.00g302920	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g302920.m01.CDS01	Csor.00g302920.m01.CDS01	CDS

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g302920.m01.start_codon01	Csor.00g302920.m01.start_codon01	start_codon

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g302920.m01.single01	Csor.00g302920.m01.single01	single

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g302920.m01.stop_codon01	Csor.00g302920.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g302920.m01	Csor.00g302920.m01-protein	polypeptide