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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSstart_codonsinglepolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTCAAAAGGATCAAGATCAATGTTCCCAAGGGCAAACATGCCCAATTTTGGCGAGACCAGTGGAAAGATGAAGTGGTTCTATCCTCCCATTTCCCTAAACTCTACCCTCTCTTGGGAAAGCAACTGGCTTTTAATAATCAATCCCGGATTCCCTCTTCTTGTTGGGACCTTATTGTCGGAAGGAATCCTAATGATGGAGGCTTAATGACTTCTCCTTGGGCACTAGAAGTGACTTCTGGGATATGGGGCAAGGACAAATCGATCTCTCCAAACACTCTGTATGGTGATCTCATAAAGGCTCTTCCTTCATTCCCTCTCTGGATAGCTTTACTTGCAATTGCCTCAGAACGCCCCTAA mRNA sequence ATGGTCAAAAGGATCAAGATCAATGTTCCCAAGGGCAAACATGCCCAATTTTGGCGAGACCAGTGGAAAGATGAAGTGGTTCTATCCTCCCATTTCCCTAAACTCTACCCTCTCTTGGGAAAGCAACTGGCTTTTAATAATCAATCCCGGATTCCCTCTTCTTGTTGGGACCTTATTGTCGGAAGGAATCCTAATGATGGAGGCTTAATGACTTCTCCTTGGGCACTAGAAGTGACTTCTGGGATATGGGGCAAGGACAAATCGATCTCTCCAAACACTCTGTATGGTGATCTCATAAAGGCTCTTCCTTCATTCCCTCTCTGGATAGCTTTACTTGCAATTGCCTCAGAACGCCCCTAA Coding sequence (CDS) ATGGTCAAAAGGATCAAGATCAATGTTCCCAAGGGCAAACATGCCCAATTTTGGCGAGACCAGTGGAAAGATGAAGTGGTTCTATCCTCCCATTTCCCTAAACTCTACCCTCTCTTGGGAAAGCAACTGGCTTTTAATAATCAATCCCGGATTCCCTCTTCTTGTTGGGACCTTATTGTCGGAAGGAATCCTAATGATGGAGGCTTAATGACTTCTCCTTGGGCACTAGAAGTGACTTCTGGGATATGGGGCAAGGACAAATCGATCTCTCCAAACACTCTGTATGGTGATCTCATAAAGGCTCTTCCTTCATTCCCTCTCTGGATAGCTTTACTTGCAATTGCCTCAGAACGCCCCTAA Protein sequence MVKRIKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSCWDLIVGRNPNDGGLMTSPWALEVTSGIWGKDKSISPNTLYGDLIKALPSFPLWIALLAIASERP
Homology
BLAST of Csor.00g302920 vs. NCBI nr
Match: KAG6573975.1 (hypothetical protein SDJN03_27862, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 252 bits (644), Expect = 1.04e-84 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query: 1 MVKRIKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSCWDLIV 60
MVKRIKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSCWDLIV
Sbjct: 1 MVKRIKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSCWDLIV 60
Query: 61 GRNPNDGGLMTSPWALEVTSGIWGKDKSISPNTLYGDLIKALPSFPLWIALLAIASERP 119
GRNPNDGGLMTSPWALEVTSGIWGKDKSISPNTLYGDLIKALPSFPLWIALLAIASERP
Sbjct: 61 GRNPNDGGLMTSPWALEVTSGIWGKDKSISPNTLYGDLIKALPSFPLWIALLAIASERP 119
BLAST of Csor.00g302920 vs. NCBI nr
Match: RVX01787.1 (putative ribonuclease H protein [Vitis vinifera]) HSP 1 Score: 49.7 bits (117), Expect = 5.20e-04 Identity = 31/81 (38.27%), Postives = 41/81 (50.62%), Query Frame = 0
Query: 5 IKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSC---WDLIVG 64
IK V KG +FW DQW D VVLS FP+L+ + + A N+ SS W+L
Sbjct: 249 IKFKVGKGTRVKFWTDQWCDNVVLSHSFPQLFEMAVNRNATVNEMWDLSSGQGGWNLRFH 308
Query: 65 RNPNDGGLMTSPWALEVTSGI 82
RN ND W L++ G+
Sbjct: 309 RNFND-------WELDLIRGL 322
BLAST of Csor.00g302920 vs. ExPASy TrEMBL
Match: A0A438IYM2 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_963 PE=4 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 2.52e-04 Identity = 31/81 (38.27%), Postives = 41/81 (50.62%), Query Frame = 0
Query: 5 IKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSC---WDLIVG 64
IK V KG +FW DQW D VVLS FP+L+ + + A N+ SS W+L
Sbjct: 249 IKFKVGKGTRVKFWTDQWCDNVVLSHSFPQLFEMAVNRNATVNEMWDLSSGQGGWNLRFH 308
Query: 65 RNPNDGGLMTSPWALEVTSGI 82
RN ND W L++ G+
Sbjct: 309 RNFND-------WELDLIRGL 322
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| KAG6573975.1 | 1.04e-84 | 100.00 | hypothetical protein SDJN03_27862, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| RVX01787.1 | 5.20e-04 | 38.27 | putative ribonuclease H protein [Vitis vinifera] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A438IYM2 | 2.52e-04 | 38.27 | Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_963 P... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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