Csor.00g255560.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g255560.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionhistone deacetylase complex subunit SAP18-like
LocationCsor_Chr06: 8503142 .. 8505603 (+)
Sequence length516
RNA-Seq ExpressionCsor.00g255560.m01
SyntenyCsor.00g255560.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGAAAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGCTCCTCCAAGAGCCCCTCATGCGCCTCCTCGTCCTCGCTTGGAGCCAGTCGATCGCGAGAAGGTATCTCTTTCTTTCCTTCTCATCTTTTACTTTTAGGGTTTCTGTCCGTTCCATCATCATGTCAGTTTTAATTTTGGTGTTCATTAGCTTGTTTTTGAATCCATCTTCATCTTCAATCGGTTTCTCGTTTCTTCGTTCTAGAACGCTATAGAAATTGCATTATTCTGATGATGATTATTTGGAACTTTGAGTATTGCCTTATTCTGGCTTAACGATTCTGTTTTACATCGATAGCTATGTAAACATAGATAGCGTGTTTGACTTTCTATACTGAGTCATTTTACTTCTCTTCTTGCAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGGTACGTTGTATTTTTGATGCTGGCCTTTTGTTTTTATGAATTGTGTTACATTTTTGTGCAAAGTTGGAAGTGACTAAGTACCCGAAAGCAAGTTTGTTTTCTAGATTAATCCATTAAGTATGAAATGAAATTCGTTGGACGCGGATTTTTTGTGTGAAATATTCATCTGTTTATGTCATTGTGGAGACCGATAGGATTTAGGCGTCGGATGAGAGGATAATTAAAGCAGATTTCTCTGGTGTTGCGTTTCTACATTTAGGTTATGAGGCATATCATATAGCTTATTGATGATCTACTCTCCTGGTTCTAAGTAATGCCACTTATTGGATTAGGGAACAGTCATTATGAAATTGAAATTTGCGTTAATTGCAGATTGGGAGTCATCATTTCAACGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTTGTGTTTCTCATCCCTTTTCAATCATTTCTCCTTGCACGCTTCGCATGACATAATTACGAATGATCTATATCATTTTTAGTTCATGTTTTTTTGTTAAATGCCACACTGTTTACCTTACTGCTGTCCTTGAACTTATGTTGTGAGTTTGTGTGTTTGTTTTTTTTTCGGGGGTGGGGTCACAGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTGGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTACCTCTCTCCATTTCTGTGCTCTCTTTCTTCCACTCTGACTTGAATGCACACTTTTATTTATGTTTTCAGGATGTTACATTGGAAATATTCATGATCTTTCGCCCTTTTTACTTCGTTGAGTTTCGATTATATGAAATTGAAGATGTAAGTTGATTAGTGGTAAAATCATCAGTTATTACCAAAACTCTGCTAGAAATTACCCAAAACCCATTAATTGTCCTAGAATTCGTCCCACTTAGTACTCAAATCTAGTCTTAACATTACTGGAATTTGACCAGAAAAAAAATTGAATACTTTTAACATGTTCAAGCATCAAGGACCAAACAGCAAACAAACCTAGCCTAGAGAAATGCTTATCTACAAAATCAGTAATGTGTTGAACTACAAGAATGCCATAAATGTCAAAGAGAAAAAGACAACTGAACTAAGGGAGGAGATTGAAGTTATTTATTCTAGTGTTGAATTTGACTAAACTAAATCTGGAAATACAAAATAAATATTTCCCTATTGAGTATTATGTTGACAGATGTTATGTCTACGACTTGTTTGATCGTGACAATACTTTCAAACTGGAGTTTTCCCATAGTCTTAAGAAGTTTGTAGCGCTCAGTTTTGTGAAAAGGTGGGTAGTTCTGATTCTAGGACATGTATGAACACATCGAACGGGCTTAACTAGTGCCTACGTTGCATATTCTTGCGCAGCTGTGATGGATAAGCTGCCCATTTAATTTCATTTAGTGCTTTTAAAGGATCACTTGCTAATTACACGGTTGTTGAATGAAATGACACAAAATCTTCTGTACTAAACACCCTTTCTTCATGCCCTGCCAGTTTGCATTTTCCTTCACTGCAAATACCTCTGTATATCTGCTAGGTGAATCGAATTAGATTGACCTATTTCTTAAAAGAACATAAAGTAATGTACGATTATAAACAAAGGTATGAAGAAAGTGAACTATTATACGAGCCTCCGAGTAATACAGATTCTGTTTCTTTACGTGAAGGTTGGGAAGACATTCTCGTTCGGAAATGGACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGGTAAAACAAACATGGGTTTTGTTTTTTGCCATCTCATTCCCCTCCTGTATTTTGTCGCGTACTTACGACACTTTTTCCCTGCAGATCGGAGATTACTTGGACGTGGCAATTATATAG

mRNA sequence

ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGAAAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGCTCCTCCAAGAGCCCCTCATGCGCCTCCTCGTCCTCGCTTGGAGCCAGTCGATCGCGAGAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCATCATTTCAACGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTGGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTTGGGAAGACATTCTCGTTCGGAAATGGACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGATCGGAGATTACTTGGACGTGGCAATTATATAG

Coding sequence (CDS)

ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGAAAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGCTCCTCCAAGAGCCCCTCATGCGCCTCCTCGTCCTCGCTTGGAGCCAGTCGATCGCGAGAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCATCATTTCAACGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTGGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTTGGGAAGACATTCTCGTTCGGAAATGGACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGATCGGAGATTACTTGGACGTGGCAATTATATAG

Protein sequence

MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
Homology
[Close]
BLAST of Csor.00g255560.m01 vs. ExPASy Swiss-Prot
Match: O64644 (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.2e-48
Identity = 100/150 (66.67%), Postives = 116/150 (77.33%), Query Frame = 0 

Query: 28  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 87
           AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2   AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 88  GKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKT 147
           GKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFA VYP+  G + VREVG+T
Sbjct: 62  GKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGET 121

Query: 148 FSFGNGRS-DDNLALAELGFQIGDYLDVAI 171
            ++ N +  DD+  L+EL F+IGDYLDVAI
Sbjct: 122 MAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]
BLAST of Csor.00g255560.m01 vs. ExPASy Swiss-Prot
Match: Q3T022 (Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.6e-29
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 0 

Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVA 170
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQIGDYLD+A
Sbjct: 78  PEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQIGDYLDIA 137

[Close]
BLAST of Csor.00g255560.m01 vs. ExPASy Swiss-Prot
Match: O00422 (Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.6e-29
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 0 

Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVA 170
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQIGDYLD+A
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQIGDYLDIA 137

[Close]
BLAST of Csor.00g255560.m01 vs. ExPASy Swiss-Prot
Match: Q5RDT5 (Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.6e-29
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 0 

Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVA 170
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQIGDYLD+A
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQIGDYLDIA 137

[Close]
BLAST of Csor.00g255560.m01 vs. ExPASy Swiss-Prot
Match: O55128 (Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.6e-29
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 0 

Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVA 170
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQIGDYLD+A
Sbjct: 78  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQIGDYLDIA 137

[Close]
BLAST of Csor.00g255560.m01 vs. NCBI nr
Match: XP_022943948.1 (histone deacetylase complex subunit SAP18-like [Cucurbita moschata] >KAG6597180.1 Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028645.1 Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347 bits (891), Expect = 1.10e-120
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCP 60
           MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCP
Sbjct: 1   MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCP 60

Query: 61  LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL 120
           LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL
Sbjct: 61  LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL 120

Query: 121 SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 171
           SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
Sbjct: 121 SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 171

[Close]
BLAST of Csor.00g255560.m01 vs. NCBI nr
Match: XP_022974173.1 (histone deacetylase complex subunit SAP18-like [Cucurbita maxima])

HSP 1 Score: 346 bits (888), Expect = 3.16e-120
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCP 60
           MRPPGLAYKLQKLPEVA+NTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCP
Sbjct: 1   MRPPGLAYKLQKLPEVADNTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCP 60

Query: 61  LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL 120
           LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL
Sbjct: 61  LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL 120

Query: 121 SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 171
           SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
Sbjct: 121 SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 171

[Close]
BLAST of Csor.00g255560.m01 vs. NCBI nr
Match: XP_023538738.1 (histone deacetylase complex subunit SAP18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301 bits (772), Expect = 6.96e-103
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 

Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 171
           FGNGRSDDNLALAELGFQIGDYLDVAII
Sbjct: 121 FGNGRSDDNLALAELGFQIGDYLDVAII 148

[Close]
BLAST of Csor.00g255560.m01 vs. NCBI nr
Match: XP_022147400.1 (histone deacetylase complex subunit SAP18 [Momordica charantia])

HSP 1 Score: 291 bits (746), Expect = 6.41e-99
Identity = 141/148 (95.27%), Postives = 144/148 (97.30%), Query Frame = 0 

Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYGAPPR PH PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 171
           FGNGR DD+LALAELGFQIGDYLDVAI+
Sbjct: 121 FGNGRLDDSLALAELGFQIGDYLDVAIL 148

[Close]
BLAST of Csor.00g255560.m01 vs. NCBI nr
Match: XP_038879427.1 (histone deacetylase complex subunit SAP18 [Benincasa hispida])

HSP 1 Score: 289 bits (739), Expect = 7.49e-98
Identity = 143/148 (96.62%), Postives = 145/148 (97.97%), Query Frame = 0 

Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAFPRASHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 171
           FGNGR DD+LALAELGFQIGDYLDVAII
Sbjct: 121 FGNGRLDDSLALAELGFQIGDYLDVAII 148

[Close]
BLAST of Csor.00g255560.m01 vs. ExPASy TrEMBL
Match: A0A6J1FXI8 (histone deacetylase complex subunit SAP18-like OS=Cucurbita moschata OX=3662 GN=LOC111448519 PE=3 SV=1)

HSP 1 Score: 347 bits (891), Expect = 5.34e-121
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCP 60
           MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCP
Sbjct: 1   MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCP 60

Query: 61  LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL 120
           LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL
Sbjct: 61  LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL 120

Query: 121 SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 171
           SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
Sbjct: 121 SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 171

[Close]
BLAST of Csor.00g255560.m01 vs. ExPASy TrEMBL
Match: A0A6J1IFF7 (histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LOC111472759 PE=3 SV=1)

HSP 1 Score: 346 bits (888), Expect = 1.53e-120
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCP 60
           MRPPGLAYKLQKLPEVA+NTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCP
Sbjct: 1   MRPPGLAYKLQKLPEVADNTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCP 60

Query: 61  LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL 120
           LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL
Sbjct: 61  LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL 120

Query: 121 SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 171
           SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
Sbjct: 121 SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 171

[Close]
BLAST of Csor.00g255560.m01 vs. ExPASy TrEMBL
Match: A0A6J1D024 (histone deacetylase complex subunit SAP18 OS=Momordica charantia OX=3673 GN=LOC111016339 PE=3 SV=1)

HSP 1 Score: 291 bits (746), Expect = 3.11e-99
Identity = 141/148 (95.27%), Postives = 144/148 (97.30%), Query Frame = 0 

Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYGAPPR PH PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 171
           FGNGR DD+LALAELGFQIGDYLDVAI+
Sbjct: 121 FGNGRLDDSLALAELGFQIGDYLDVAIL 148

[Close]
BLAST of Csor.00g255560.m01 vs. ExPASy TrEMBL
Match: A0A5D3D2K7 (Histone deacetylase complex subunit SAP18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004240 PE=3 SV=1)

HSP 1 Score: 288 bits (738), Expect = 5.15e-98
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0 

Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYGAPPRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 171
           FGN R DD+LAL ELGFQIGDYLDVAII
Sbjct: 121 FGNRRLDDSLALGELGFQIGDYLDVAII 148

[Close]
BLAST of Csor.00g255560.m01 vs. ExPASy TrEMBL
Match: A0A1S3AVL4 (histone deacetylase complex subunit SAP18 OS=Cucumis melo OX=3656 GN=LOC103483322 PE=3 SV=1)

HSP 1 Score: 288 bits (738), Expect = 5.15e-98
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0 

Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYGAPPRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 171
           FGN R DD+LAL ELGFQIGDYLDVAII
Sbjct: 121 FGNRRLDDSLALGELGFQIGDYLDVAII 148

[Close]
BLAST of Csor.00g255560.m01 vs. TAIR 10
Match: AT2G45640.1 (SIN3 associated polypeptide P18 )

HSP 1 Score: 191.4 bits (485), Expect = 5.9e-49
Identity = 100/150 (66.67%), Postives = 116/150 (77.33%), Query Frame = 0 

Query: 28  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 87
           AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2   AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 88  GKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKT 147
           GKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFA VYP+  G + VREVG+T
Sbjct: 62  GKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGET 121

Query: 148 FSFGNGRS-DDNLALAELGFQIGDYLDVAI 171
            ++ N +  DD+  L+EL F+IGDYLDVAI
Sbjct: 122 MAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]
BLAST of Csor.00g255560.m01 vs. TAIR 10
Match: AT2G45640.2 (SIN3 associated polypeptide P18 )

HSP 1 Score: 181.4 bits (459), Expect = 6.1e-46
Identity = 97/150 (64.67%), Postives = 113/150 (75.33%), Query Frame = 0 

Query: 28  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 87
           AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2   AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 88  GKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKT 147
           GKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFA VYP+  G +    VG+T
Sbjct: 62  GKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGY---NVGET 121

Query: 148 FSFGNGRS-DDNLALAELGFQIGDYLDVAI 171
            ++ N +  DD+  L+EL F+IGDYLDVAI
Sbjct: 122 MAYPNRKQPDDSKTLSELPFEIGDYLDVAI 148

The following BLAST results are available for this feature:
BLAST of Csor.00g255560.m01 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O646448.2e-4866.67Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2... [more]
Q3T0226.6e-2953.72Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV... [more]
O004226.6e-2953.72Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 ... [more]
Q5RDT56.6e-2953.72Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 ... [more]
O551288.6e-2953.72Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1... [more]
BLAST of Csor.00g255560.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022943948.11.10e-120100.00histone deacetylase complex subunit SAP18-like [Cucurbita moschata] >KAG6597180.... [more]
XP_022974173.13.16e-12099.42histone deacetylase complex subunit SAP18-like [Cucurbita maxima][more]
XP_023538738.16.96e-103100.00histone deacetylase complex subunit SAP18 [Cucurbita pepo subsp. pepo][more]
XP_022147400.16.41e-9995.27histone deacetylase complex subunit SAP18 [Momordica charantia][more]
XP_038879427.17.49e-9896.62histone deacetylase complex subunit SAP18 [Benincasa hispida][more]
BLAST of Csor.00g255560.m01 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FXI85.34e-121100.00histone deacetylase complex subunit SAP18-like OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1IFF71.53e-12099.42histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A6J1D0243.11e-9995.27histone deacetylase complex subunit SAP18 OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A5D3D2K75.15e-9895.95Histone deacetylase complex subunit SAP18 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A1S3AVL45.15e-9895.95histone deacetylase complex subunit SAP18 OS=Cucumis melo OX=3656 GN=LOC10348332... [more]
BLAST of Csor.00g255560.m01 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G45640.15.9e-4966.67SIN3 associated polypeptide P18 [more]
AT2G45640.26.1e-4664.67SIN3 associated polypeptide P18 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010516Sin3 associated polypeptide p18PFAMPF06487SAP18coord: 52..170
e-value: 1.5E-38
score: 132.2
IPR010516Sin3 associated polypeptide p18PANTHERPTHR13082SAP18coord: 27..171
IPR042534Sin3 associated polypeptide p18 superfamilyGENE3D3.10.20.550ASAP complex, SAP18 subunitcoord: 43..171
e-value: 5.4E-46
score: 157.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availablePANTHERPTHR13082:SF4DEACETYLASE COMPLEX SUBUNIT SAP18, PUTATIVE-RELATEDcoord: 27..171

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g255560Csor.00g255560gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g255560.m01.CDS06Csor.00g255560.m01.CDS06CDS
Csor.00g255560.m01.CDS05Csor.00g255560.m01.CDS05CDS
Csor.00g255560.m01.CDS04Csor.00g255560.m01.CDS04CDS
Csor.00g255560.m01.CDS03Csor.00g255560.m01.CDS03CDS
Csor.00g255560.m01.CDS02Csor.00g255560.m01.CDS02CDS
Csor.00g255560.m01.CDS01Csor.00g255560.m01.CDS01CDS


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g255560.m01.initial01Csor.00g255560.m01.initial01initial


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g255560.m01.start_codon01Csor.00g255560.m01.start_codon01start_codon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g255560.m01.intron05Csor.00g255560.m01.intron05intron
Csor.00g255560.m01.intron04Csor.00g255560.m01.intron04intron
Csor.00g255560.m01.intron03Csor.00g255560.m01.intron03intron
Csor.00g255560.m01.intron02Csor.00g255560.m01.intron02intron
Csor.00g255560.m01.intron01Csor.00g255560.m01.intron01intron


The following internal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g255560.m01.internal04Csor.00g255560.m01.internal04internal
Csor.00g255560.m01.internal03Csor.00g255560.m01.internal03internal
Csor.00g255560.m01.internal02Csor.00g255560.m01.internal02internal
Csor.00g255560.m01.internal01Csor.00g255560.m01.internal01internal


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g255560.m01.terminal01Csor.00g255560.m01.terminal01terminal


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g255560.m01.stop_codon01Csor.00g255560.m01.stop_codon01stop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g255560.m01Csor.00g255560.m01-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045892 negative regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003714 transcription corepressor activity