Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGTTGGAAGTCCCTGCTTCTTGCTGCAATGCTTGTTTCGTCTCTTCTTGTGGTGTCCGAGAGCCGCGTGGCCAGGAAGGATTTGGGCCTTGACCTGGGTGGGGTGGGCGTTGGGATTGGAGCTGGAATAGGCATTGGACTTGGTGGAAGTGGTTCCGGCTCCGGCTCTGGATCAAGTTCAAGCTCGAGCTCAAGTTCGAGTTCTAGTTCTTCTTCTTCTGGGTCGGGTTCTGATTCTGGATCTGAAGCAGGCTCGTATGCCGGGTCTCGAGCGGGTTCTGGATCGGGTGATCGTGGAGGTGGAGGGTCAGGCTATGGTGGAGGATACGGGTCGGGTTATGGAGGCGGGCATGGAAAATGA
mRNA sequence
ATGGGTAGTTGGAAGTCCCTGCTTCTTGCTGCAATGCTTGTTTCGTCTCTTCTTGTGGTGTCCGAGAGCCGCGTGGCCAGGAAGGATTTGGGCCTTGACCTGGGTGGGGTGGGCGTTGGGATTGGAGCTGGAATAGGCATTGGACTTGGTGGAAGTGGTTCCGGCTCCGGCTCTGGATCAAGTTCAAGCTCGAGCTCAAGTTCGAGTTCTAGTTCTTCTTCTTCTGGGTCGGGTTCTGATTCTGGATCTGAAGCAGGCTCGTATGCCGGGTCTCGAGCGGGTTCTGGATCGGGTGATCGTGGAGGTGGAGGGTCAGGCTATGGTGGAGGATACGGGTCGGGTTATGGAGGCGGGCATGGAAAATGA
Coding sequence (CDS)
ATGGGTAGTTGGAAGTCCCTGCTTCTTGCTGCAATGCTTGTTTCGTCTCTTCTTGTGGTGTCCGAGAGCCGCGTGGCCAGGAAGGATTTGGGCCTTGACCTGGGTGGGGTGGGCGTTGGGATTGGAGCTGGAATAGGCATTGGACTTGGTGGAAGTGGTTCCGGCTCCGGCTCTGGATCAAGTTCAAGCTCGAGCTCAAGTTCGAGTTCTAGTTCTTCTTCTTCTGGGTCGGGTTCTGATTCTGGATCTGAAGCAGGCTCGTATGCCGGGTCTCGAGCGGGTTCTGGATCGGGTGATCGTGGAGGTGGAGGGTCAGGCTATGGTGGAGGATACGGGTCGGGTTATGGAGGCGGGCATGGAAAATGA
Protein sequence
MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYGGGHGK
Homology
BLAST of Csor.00g217250.m01 vs. NCBI nr
Match:
KAG6589747.1 (hypothetical protein SDJN03_15170, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 166 bits (420), Expect = 1.72e-50
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
Query: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
Query: 61 SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYGGGHG 120
SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYGGGHG
Sbjct: 61 SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYGGGHG 120
BLAST of Csor.00g217250.m01 vs. NCBI nr
Match:
XP_023515822.1 (counting factor 45-1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 158 bits (400), Expect = 2.04e-47
Identity = 120/123 (97.56%), Postives = 120/123 (97.56%), Query Frame = 0
Query: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
Query: 61 --SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYGGG 120
SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG RGGGGSGYGGGYGSGYGGG
Sbjct: 61 GSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYGGG 120
BLAST of Csor.00g217250.m01 vs. NCBI nr
Match:
XP_022921886.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata])
HSP 1 Score: 157 bits (398), Expect = 4.37e-47
Identity = 120/125 (96.00%), Postives = 120/125 (96.00%), Query Frame = 0
Query: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
Query: 61 ----SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYG 120
SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG RGGGGSGYGGGYGSGYG
Sbjct: 61 GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 120
BLAST of Csor.00g217250.m01 vs. NCBI nr
Match:
XP_022988598.1 (glycine-rich cell wall structural protein 2-like [Cucurbita maxima])
HSP 1 Score: 147 bits (371), Expect = 5.62e-43
Identity = 116/125 (92.80%), Postives = 117/125 (93.60%), Query Frame = 0
Query: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
MG KSL+LAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1 MGRLKSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
Query: 61 ----SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYG 120
SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG GGGGSGYGGGYGSGYG
Sbjct: 61 GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYGSGYG 120
BLAST of Csor.00g217250.m01 vs. NCBI nr
Match:
XP_038879831.1 (glycine-rich cell wall structural protein 2 [Benincasa hispida])
HSP 1 Score: 138 bits (347), Expect = 2.68e-39
Identity = 110/125 (88.00%), Postives = 112/125 (89.60%), Query Frame = 0
Query: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
MGS KSL+LAA+LVSSL VVS SRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1 MGSLKSLVLAALLVSSLFVVSHSRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
Query: 61 SS------SSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSG 119
S SSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG GGGGSGYGGGYG G
Sbjct: 61 GSGSGSGSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGHGGGGSGYGGGYGGG 120
BLAST of Csor.00g217250.m01 vs. ExPASy TrEMBL
Match:
A0A6J1E2L6 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430017 PE=4 SV=1)
HSP 1 Score: 157 bits (398), Expect = 2.11e-47
Identity = 120/125 (96.00%), Postives = 120/125 (96.00%), Query Frame = 0
Query: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
Query: 61 ----SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYG 120
SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG RGGGGSGYGGGYGSGYG
Sbjct: 61 GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 120
BLAST of Csor.00g217250.m01 vs. ExPASy TrEMBL
Match:
A0A6J1JMR8 (glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111485795 PE=4 SV=1)
HSP 1 Score: 147 bits (371), Expect = 2.72e-43
Identity = 116/125 (92.80%), Postives = 117/125 (93.60%), Query Frame = 0
Query: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
MG KSL+LAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1 MGRLKSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
Query: 61 ----SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYG 120
SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG GGGGSGYGGGYGSGYG
Sbjct: 61 GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYGSGYG 120
BLAST of Csor.00g217250.m01 vs. ExPASy TrEMBL
Match:
A0A0A0LWP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1)
HSP 1 Score: 138 bits (347), Expect = 1.34e-39
Identity = 111/128 (86.72%), Postives = 117/128 (91.41%), Query Frame = 0
Query: 1 MGSWKSLLLAAMLVSSLLVVS-ESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSG---- 60
MGS KSL+LAA+LVSSL VVS +SRVARKDLGLDLGGVG+G+GAG+GIGLGGSGSG
Sbjct: 1 MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60
Query: 61 --SGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGS 120
SGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG RGG GSGYGGGYGS
Sbjct: 61 SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGS 120
BLAST of Csor.00g217250.m01 vs. ExPASy TrEMBL
Match:
A0A5A7T0K2 (Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002000 PE=4 SV=1)
HSP 1 Score: 133 bits (334), Expect = 1.23e-37
Identity = 108/127 (85.04%), Postives = 114/127 (89.76%), Query Frame = 0
Query: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
MGS KSL+LAA+LVSS VVS+SRVARKDLGLDLGGVG+G+G GIGIGLGGSGSGSGSGS
Sbjct: 1 MGSLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLGGSGSGSGSGS 60
Query: 61 SS----SSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGG--GGSGYGGGYGSG 120
S SSSSSSSSSSSSSGSGS+SGSEAGSYAGSRAGSGS RGG GGSGYGGGYGSG
Sbjct: 61 GSGSGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGGYGSG 120
BLAST of Csor.00g217250.m01 vs. ExPASy TrEMBL
Match:
A0A1S4DUX4 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC107990650 PE=4 SV=1)
HSP 1 Score: 133 bits (334), Expect = 1.23e-37
Identity = 108/127 (85.04%), Postives = 114/127 (89.76%), Query Frame = 0
Query: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
MGS KSL+LAA+LVSS VVS+SRVARKDLGLDLGGVG+G+G GIGIGLGGSGSGSGSGS
Sbjct: 1 MGSLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLGGSGSGSGSGS 60
Query: 61 SS----SSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGG--GGSGYGGGYGSG 120
S SSSSSSSSSSSSSGSGS+SGSEAGSYAGSRAGSGS RGG GGSGYGGGYGSG
Sbjct: 61 GSGSGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGGYGSG 120
BLAST of Csor.00g217250.m01 vs. TAIR 10
Match:
AT4G30460.1 (glycine-rich protein )
HSP 1 Score: 87.0 bits (214), Expect = 1.1e-17
Identity = 83/122 (68.03%), Postives = 96/122 (78.69%), Query Frame = 0
Query: 6 SLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGS------- 65
SL+L +++++ ++VSESRVARKDLGLDLGG+G GIG GIGIG GGSGSG+G+
Sbjct: 9 SLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGG 68
Query: 66 GSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYGGG 121
GSSSSSSSSSSSSSSS G G D+GSEAGSYAGS AGSGSG R G G G G G G G+GGG
Sbjct: 69 GSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGG 128
BLAST of Csor.00g217250.m01 vs. TAIR 10
Match:
AT4G30450.1 (glycine-rich protein )
HSP 1 Score: 84.7 bits (208), Expect = 5.5e-17
Identity = 68/99 (68.69%), Postives = 85/99 (85.86%), Query Frame = 0
Query: 8 LLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLG-------GSGSGSGSGS 67
LL +++SSL++++ESR+ARKDLG+DLGG+G+G+G G+GIGLG G+GSGSGSGS
Sbjct: 9 LLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSGS 68
Query: 68 SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGD 100
SSSSSSSSSSSSSSGSG +GS AGS+AGSRAGSGSG+
Sbjct: 69 RSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSGN 107
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6589747.1 | 1.72e-50 | 100.00 | hypothetical protein SDJN03_15170, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_023515822.1 | 2.04e-47 | 97.56 | counting factor 45-1-like [Cucurbita pepo subsp. pepo] | [more] |
| XP_022921886.1 | 4.37e-47 | 96.00 | glycine-rich cell wall structural protein 2-like [Cucurbita moschata] | [more] |
| XP_022988598.1 | 5.62e-43 | 92.80 | glycine-rich cell wall structural protein 2-like [Cucurbita maxima] | [more] |
| XP_038879831.1 | 2.68e-39 | 88.00 | glycine-rich cell wall structural protein 2 [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1E2L6 | 2.11e-47 | 96.00 | glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... | [more] |
| A0A6J1JMR8 | 2.72e-43 | 92.80 | glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=... | [more] |
| A0A0A0LWP0 | 1.34e-39 | 86.72 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1 | [more] |
| A0A5A7T0K2 | 1.23e-37 | 85.04 | Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=... | [more] |
| A0A1S4DUX4 | 1.23e-37 | 85.04 | glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g217250.m01.CDS01 | Csor.00g217250.m01.CDS01 | CDS |
The following single feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g217250.m01.single01 | Csor.00g217250.m01.single01 | single |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g217250.m01.start_codon01 | Csor.00g217250.m01.start_codon01 | start_codon |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g217250.m01.stop_codon01 | Csor.00g217250.m01.stop_codon01 | stop_codon |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g217250.m01 | Csor.00g217250.m01-protein | polypeptide |
