Csor.00g217250 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g217250
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	glycine-rich cell wall structural protein 2-like
Location	Csor_Chr10: 2094666 .. 2095031 (+)
RNA-Seq Expression	Csor.00g217250
Synteny	Csor.00g217250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGTTGGAAGTCCCTGCTTCTTGCTGCAATGCTTGTTTCGTCTCTTCTTGTGGTGTCCGAGAGCCGCGTGGCCAGGAAGGATTTGGGCCTTGACCTGGGTGGGGTGGGCGTTGGGATTGGAGCTGGAATAGGCATTGGACTTGGTGGAAGTGGTTCCGGCTCCGGCTCTGGATCAAGTTCAAGCTCGAGCTCAAGTTCGAGTTCTAGTTCTTCTTCTTCTGGGTCGGGTTCTGATTCTGGATCTGAAGCAGGCTCGTATGCCGGGTCTCGAGCGGGTTCTGGATCGGGTGATCGTGGAGGTGGAGGGTCAGGCTATGGTGGAGGATACGGGTCGGGTTATGGAGGCGGGCATGGAAAATGA

mRNA sequence

ATGGGTAGTTGGAAGTCCCTGCTTCTTGCTGCAATGCTTGTTTCGTCTCTTCTTGTGGTGTCCGAGAGCCGCGTGGCCAGGAAGGATTTGGGCCTTGACCTGGGTGGGGTGGGCGTTGGGATTGGAGCTGGAATAGGCATTGGACTTGGTGGAAGTGGTTCCGGCTCCGGCTCTGGATCAAGTTCAAGCTCGAGCTCAAGTTCGAGTTCTAGTTCTTCTTCTTCTGGGTCGGGTTCTGATTCTGGATCTGAAGCAGGCTCGTATGCCGGGTCTCGAGCGGGTTCTGGATCGGGTGATCGTGGAGGTGGAGGGTCAGGCTATGGTGGAGGATACGGGTCGGGTTATGGAGGCGGGCATGGAAAATGA

Coding sequence (CDS)

ATGGGTAGTTGGAAGTCCCTGCTTCTTGCTGCAATGCTTGTTTCGTCTCTTCTTGTGGTGTCCGAGAGCCGCGTGGCCAGGAAGGATTTGGGCCTTGACCTGGGTGGGGTGGGCGTTGGGATTGGAGCTGGAATAGGCATTGGACTTGGTGGAAGTGGTTCCGGCTCCGGCTCTGGATCAAGTTCAAGCTCGAGCTCAAGTTCGAGTTCTAGTTCTTCTTCTTCTGGGTCGGGTTCTGATTCTGGATCTGAAGCAGGCTCGTATGCCGGGTCTCGAGCGGGTTCTGGATCGGGTGATCGTGGAGGTGGAGGGTCAGGCTATGGTGGAGGATACGGGTCGGGTTATGGAGGCGGGCATGGAAAATGA

Protein sequence

MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYGGGHGK

Homology

[Close]

BLAST of Csor.00g217250 vs. NCBI nr
Match: KAG6589747.1 (hypothetical protein SDJN03_15170, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166 bits (420), Expect = 1.72e-50
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYGGGHG 120
           SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYGGGHG
Sbjct: 61  SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYGGGHG 120

[Close]

BLAST of Csor.00g217250 vs. NCBI nr
Match: XP_023515822.1 (counting factor 45-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158 bits (400), Expect = 2.04e-47
Identity = 120/123 (97.56%), Postives = 120/123 (97.56%), Query Frame = 0


Query: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  --SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYGGG 120
             SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG RGGGGSGYGGGYGSGYGGG
Sbjct: 61  GSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYGGG 120

[Close]

BLAST of Csor.00g217250 vs. NCBI nr
Match: XP_022921886.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata])

HSP 1 Score: 157 bits (398), Expect = 4.37e-47
Identity = 120/125 (96.00%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  ----SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYG 120
               SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG RGGGGSGYGGGYGSGYG
Sbjct: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 120

[Close]

BLAST of Csor.00g217250 vs. NCBI nr
Match: XP_022988598.1 (glycine-rich cell wall structural protein 2-like [Cucurbita maxima])

HSP 1 Score: 147 bits (371), Expect = 5.62e-43
Identity = 116/125 (92.80%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           MG  KSL+LAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1   MGRLKSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  ----SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYG 120
               SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG  GGGGSGYGGGYGSGYG
Sbjct: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYGSGYG 120

[Close]

BLAST of Csor.00g217250 vs. NCBI nr
Match: XP_038879831.1 (glycine-rich cell wall structural protein 2 [Benincasa hispida])

HSP 1 Score: 138 bits (347), Expect = 2.68e-39
Identity = 110/125 (88.00%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           MGS KSL+LAA+LVSSL VVS SRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1   MGSLKSLVLAALLVSSLFVVSHSRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  SS------SSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSG 119
            S      SSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG  GGGGSGYGGGYG G
Sbjct: 61  GSGSGSGSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGHGGGGSGYGGGYGGG 120

[Close]

BLAST of Csor.00g217250 vs. ExPASy TrEMBL
Match: A0A6J1E2L6 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430017 PE=4 SV=1)

HSP 1 Score: 157 bits (398), Expect = 2.11e-47
Identity = 120/125 (96.00%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  ----SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYG 120
               SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG RGGGGSGYGGGYGSGYG
Sbjct: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 120

[Close]

BLAST of Csor.00g217250 vs. ExPASy TrEMBL
Match: A0A6J1JMR8 (glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111485795 PE=4 SV=1)

HSP 1 Score: 147 bits (371), Expect = 2.72e-43
Identity = 116/125 (92.80%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           MG  KSL+LAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1   MGRLKSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  ----SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYG 120
               SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG  GGGGSGYGGGYGSGYG
Sbjct: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYGSGYG 120

[Close]

BLAST of Csor.00g217250 vs. ExPASy TrEMBL
Match: A0A0A0LWP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1)

HSP 1 Score: 138 bits (347), Expect = 1.34e-39
Identity = 111/128 (86.72%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1   MGSWKSLLLAAMLVSSLLVVS-ESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSG---- 60
           MGS KSL+LAA+LVSSL VVS +SRVARKDLGLDLGGVG+G+GAG+GIGLGGSGSG    
Sbjct: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60

Query: 61  --SGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGS 120
             SGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG RGG GSGYGGGYGS
Sbjct: 61  SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGS 120

[Close]

BLAST of Csor.00g217250 vs. ExPASy TrEMBL
Match: A0A5A7T0K2 (Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002000 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 1.23e-37
Identity = 108/127 (85.04%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           MGS KSL+LAA+LVSS  VVS+SRVARKDLGLDLGGVG+G+G GIGIGLGGSGSGSGSGS
Sbjct: 1   MGSLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLGGSGSGSGSGS 60

Query: 61  SS----SSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGG--GGSGYGGGYGSG 120
            S    SSSSSSSSSSSSSGSGS+SGSEAGSYAGSRAGSGS  RGG  GGSGYGGGYGSG
Sbjct: 61  GSGSGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGGYGSG 120

[Close]

BLAST of Csor.00g217250 vs. ExPASy TrEMBL
Match: A0A1S4DUX4 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC107990650 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 1.23e-37
Identity = 108/127 (85.04%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           MGS KSL+LAA+LVSS  VVS+SRVARKDLGLDLGGVG+G+G GIGIGLGGSGSGSGSGS
Sbjct: 1   MGSLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLGGSGSGSGSGS 60

Query: 61  SS----SSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGG--GGSGYGGGYGSG 120
            S    SSSSSSSSSSSSSGSGS+SGSEAGSYAGSRAGSGS  RGG  GGSGYGGGYGSG
Sbjct: 61  GSGSGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGGYGSG 120

[Close]

BLAST of Csor.00g217250 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-17
Identity = 83/122 (68.03%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 6   SLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGS------- 65
           SL+L  +++++ ++VSESRVARKDLGLDLGG+G GIG GIGIG GGSGSG+G+       
Sbjct: 9   SLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGG 68

Query: 66  GSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYGGG 121
           GSSSSSSSSSSSSSSS G G D+GSEAGSYAGS AGSGSG R G G G G G G G+GGG
Sbjct: 69  GSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGG 128

[Close]

BLAST of Csor.00g217250 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein )

HSP 1 Score: 84.7 bits (208), Expect = 5.5e-17
Identity = 68/99 (68.69%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 8   LLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLG-------GSGSGSGSGS 67
           LL  +++SSL++++ESR+ARKDLG+DLGG+G+G+G G+GIGLG       G+GSGSGSGS
Sbjct: 9   LLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSGS 68

Query: 68  SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGD 100
            SSSSSSSSSSSSSSGSG  +GS AGS+AGSRAGSGSG+
Sbjct: 69  RSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSGN 107

The following BLAST results are available for this feature:

BLAST of Csor.00g217250 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g217250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589747.1	1.72e-50	100.00	hypothetical protein SDJN03_15170, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023515822.1	2.04e-47	97.56	counting factor 45-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022921886.1	4.37e-47	96.00	glycine-rich cell wall structural protein 2-like [Cucurbita moschata]	[more]
XP_022988598.1	5.62e-43	92.80	glycine-rich cell wall structural protein 2-like [Cucurbita maxima]	[more]
XP_038879831.1	2.68e-39	88.00	glycine-rich cell wall structural protein 2 [Benincasa hispida]	[more]

BLAST of Csor.00g217250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2L6	2.11e-47	96.00	glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JMR8	2.72e-43	92.80	glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A0A0LWP0	1.34e-39	86.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1	[more]
A0A5A7T0K2	1.23e-37	85.04	Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S4DUX4	1.23e-37	85.04	glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Csor.00g217250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30460.1	1.1e-17	68.03	glycine-rich protein	[more]
AT4G30450.1	5.5e-17	68.69	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..90
None	No IPR available	PANTHER	PTHR38934:SF13	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATED	coord: 1..120
None	No IPR available	PANTHER	PTHR38934	HYPHALLY REGULATED CELL WALL PROTEIN 1	coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g217250.m01	Csor.00g217250.m01	mRNA