Csor.00g175850.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g175850.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr09: 1804745 .. 1806200 (-)
Sequence length252
RNA-Seq ExpressionCsor.00g175850.m01
SyntenyCsor.00g175850.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTTTGTAGAATCGAAGTTGACAGAAGAGAGTGAGCACACAGAGGCTTTTGGTATAACAATATGCCATTGCTCTTGCGTGCTCACTTCTCTGTCTGTCAGCTTCCATCGCCAATTCCTTCTTTTTTCCCCCCTAAATTCTCAATTTTCTTCCTTTTTTCTTGTCTAATTTTTGTTCATTGTTCATATATACTTCAATTATGATGGTTCATGTGAGAATTGAGATGGGTTTTGTGAAGTTGAGATGTAAATCAAATTTTTGGGCTCAATAATTCTCATTCAATTGGTTTTGATCTGAAAGTGGAAACCTAAATCCAGGTCTTGTTGTTCTTGTTCTTGTTCTTCTTTGGTTCTTTTATTTGAGGTTTAGAACAGAAGCTAATGGGGGAAGATCTACAAAAGAAAAGCACAAGATGATTCATTTATGCAGGTTTTGTCAACAATGAAACTGGTAATTTTAAATGTTCTATGTTTTAAGACAGCCGTACGTCAATTGCAGTGACAAAATAATATAATTAGTGGGATCTTTTTTTTTTTTTTTCTTACTTAATTTGGGAAAGTAATTATGACTTCATTGACTGCTTATATGTATCTCTTTTTGTTTTGGTCTTGTTCATCACTTTCATTTTGGTTGGAGGTCGAATCTCAGGCACATCAAGCTTGAATAACTATAAGTCAGGTGTTCAAGAGATTGGCGTTTGTGGTATATATTACTAGTTGCAGTCTACAAGCTTTTGCAAGCTCGAGGTATGTGATAAGCCTTTTCTATCAATGAAATAATGAACGATGTTTCTTTTTTTTTTTTTTAGTTCATTAAGTATGAAGCAAGAGATCGAACATTCAACTGTATGGAATGCTTAATCTGCATCTTATTCATGTTGAAGAATGTTCTTTTGAACGTAAGTCGAGTGATTTTTCATTTGAGCTTTAATCCATCGTCTTAAATAATAATCTATGAGTGATAAATTAAGTATTAGACATTTCTTGAGCTATCGAGGTTTATCATTGCTTATTCAGTCTTTCATCACAAGAAAAATAAATTGAGTATTAGACATTTCTTGAGCTATCGAGGTTTATCATTGCTTATTCAGTCTTTCATCACAAGAAAAATAAATTGAGTATTAGACATTTCTTGAGCTATCGAGGTTTATCATTGCTTATTCAGTCTTTCATCACAAGAAAAATCAAGTACTTGTGTGAAAGTTTGTTCTTCCATGGTGGATGATTTTATGAATATATTGTTTATGCCGCAGGGATAAGTATGTCTTGCTAAAATATTTTGTTATTAAGAAAGTTCTAATAATTTATTTGGATATAACTCGAAGAGGTCAATTGGTTCAATACTCGCTTCCAGTTTGATTTGGAAGTCAAGCGCACTATCATTGCACCACAGATCTCATGATAATGACATTTTCTTGATTCTGATTTATATGGTAGATAAGCAAGGACAATGA

mRNA sequence

ATGGTGTTTGTAGAATCGAAGTTGACAGAAGAGAGTGAGCACACAGAGGCTTTTGGTCTTGTTGTTCTTGTTCTTGTTCTTCTTTGGTTCTTTTATTTGAGGTTTAGAACAGAAGCTAATGGGGGAAGATCTACAAAAGAAAAGCACAAGATGATTCATTTATGCAGGTGTTCAAGAGATTGGCGTTTGTGGTATATATTACTAGTTGCAGTCTACAAGCTTTTGCAAGCTCGAGATAAGCAAGGACAATGA

Coding sequence (CDS)

ATGGTGTTTGTAGAATCGAAGTTGACAGAAGAGAGTGAGCACACAGAGGCTTTTGGTCTTGTTGTTCTTGTTCTTGTTCTTCTTTGGTTCTTTTATTTGAGGTTTAGAACAGAAGCTAATGGGGGAAGATCTACAAAAGAAAAGCACAAGATGATTCATTTATGCAGGTGTTCAAGAGATTGGCGTTTGTGGTATATATTACTAGTTGCAGTCTACAAGCTTTTGCAAGCTCGAGATAAGCAAGGACAATGA

Protein sequence

MVFVESKLTEESEHTEAFGLVVLVLVLLWFFYLRFRTEANGGRSTKEKHKMIHLCRCSRDWRLWYILLVAVYKLLQARDKQGQ
Homology
[Close]
BLAST of Csor.00g175850.m01 vs. NCBI nr
Match: KAG6591539.1 (hypothetical protein SDJN03_13885, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175 bits (443), Expect = 3.47e-55
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MVFVESKLTEESEHTEAFGLVVLVLVLLWFFYLRFRTEANGGRSTKEKHKMIHLCRCSRD 60
          MVFVESKLTEESEHTEAFGLVVLVLVLLWFFYLRFRTEANGGRSTKEKHKMIHLCRCSRD
Sbjct: 1  MVFVESKLTEESEHTEAFGLVVLVLVLLWFFYLRFRTEANGGRSTKEKHKMIHLCRCSRD 60

Query: 61 WRLWYILLVAVYKLLQARDKQGQ 83
          WRLWYILLVAVYKLLQARDKQGQ
Sbjct: 61 WRLWYILLVAVYKLLQARDKQGQ 83

[Close]
BLAST of Csor.00g175850.m01 vs. NCBI nr
Match: KAG7024424.1 (hypothetical protein SDJN02_13239, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 7.72e-12
Identity = 36/55 (65.45%), Postives = 36/55 (65.45%), Query Frame = 0 

Query: 1  MVFVESKLTEESEHTEAFGLVVLVLVLLWFFYLRFRTEANGGRSTKEKHKMIHLC 55
          MVFVESKLTEESEHTEAF                   EANGGRSTKEKHKMIHLC
Sbjct: 1  MVFVESKLTEESEHTEAF-------------------EANGGRSTKEKHKMIHLC 36

The following BLAST results are available for this feature:
BLAST of Csor.00g175850.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g175850.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591539.13.47e-55100.00hypothetical protein SDJN03_13885, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7024424.17.72e-1265.45hypothetical protein SDJN02_13239, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g175850.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g175850.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g175850Csor.00g175850gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g175850.m01.CDS01Csor.00g175850.m01.CDS01CDS
Csor.00g175850.m01.CDS02Csor.00g175850.m01.CDS02CDS
Csor.00g175850.m01.CDS03Csor.00g175850.m01.CDS03CDS
Csor.00g175850.m01.CDS04Csor.00g175850.m01.CDS04CDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g175850.m01.stop_codon01Csor.00g175850.m01.stop_codon01stop_codon


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g175850.m01.terminal01Csor.00g175850.m01.terminal01terminal


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g175850.m01.intron01Csor.00g175850.m01.intron01intron
Csor.00g175850.m01.intron02Csor.00g175850.m01.intron02intron
Csor.00g175850.m01.intron03Csor.00g175850.m01.intron03intron


The following internal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g175850.m01.internal01Csor.00g175850.m01.internal01internal
Csor.00g175850.m01.internal02Csor.00g175850.m01.internal02internal


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g175850.m01.initial01Csor.00g175850.m01.initial01initial


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g175850.m01.start_codon01Csor.00g175850.m01.start_codon01start_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g175850.m01Csor.00g175850.m01-proteinpolypeptide