Csor.00g151700.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g151700.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr14: 3885803 .. 3888411 (+)
Sequence length	351
RNA-Seq Expression	Csor.00g151700.m01
Synteny	Csor.00g151700.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTATGATAGCGCATGGGGGAGGTACGTGGTCCTAAAGGATTGGGCGCCCTACCTACTTTTGACTGTTGAAATGGATTGGGAGGAAACAAGTAAAATAGAAGAAAAAAGTAAATAAATAAATAAATAAATAAAAATAATAATAATAACAAACAAACAAATAAATAATATATCCTTTAATTTAATGCCCCATAAATATAACTGTGGTCCCTTCTATTCCATTGGCTACCTAGCTTTTCTTTCTTTTCCTAAATTTCATTTTATTTTTTTCTTGTCCTTCCAAAATTTAAAATAAGTAAATTACGCAAAATACTTAATTTTCAACTAATTTTCAATTTTTCTTCGAATTTTTTAATGACTTTTTTTTTAATTTTTATTTTTAATATCGGAGTGTCCGAAAAATCTTTTAGACCAACTCGAAATTTCGATTTGATTGGGTACATGACCCGAACAACTTGAATAGAGTTCATAATCCAACTCAAAACCTTTTATTTTTTGGTTGGGTTGTCTATTTTATTTTAATTATTTTAAAAATTCTACTGATCCAAATAACTCGATATTGAAATATAATATTTAGAGTATATATTATTTATAGAATATATCTTAATATTCTTTATTTATGATTTGATTTACAATATATTTTATTTTATTATTTTATATTTTCCTCCTTTGTACATGCTAGCTTGTATATTTATTTAAAAGATATCAATATCAACGAAAATACACACCTTCCCAATTCTATTTCTATTTCTATTTCTCATTCTTAACACATGGTATTAGAGCATCATTTTTAACACTCGACCCAAAAAAAATTCAACTTGTGAACTGACTCGAATTTTCGAATTTTCTAAAAAATATTAGTTTTTCACTAATAAAATTTTGAAAATATATTAACATTATTATTATTAGTTCACCGAATTTAATAAAATGTAACTCCCAAGTAAAATATAATGGTGTTGAAATGAAATATTTATTTTTTAAGAGTTTAGGGGCGAAAATGAAATATTCATAAAACTTAAGGCTAAAAGTGAAATAATTTTTTGGAGTAAAATGAAATGGGAATGAATAGGTGGGTGAATTTGGCAATGGACCACGTAAATGGGAAATGCTGGCATCATTCCATTCTCTGCGTTTGATAGGGAAATTTCAAGGCAGTCCCTAACGCCTTCCCTTCCCCTTCTGCCAATTCCATCTTTTTATTCTTTTTAACATTTAACCCTTTAACTTGGATGCTATGCTTTGCATTGCTTACATCACCTCTTCCTCCTATTTTTATTCCAATTTAAGGTATTTCATTTTCTCATTTTTTATACCTATTTTTACGGGTCGAGAATTATTGAAATCAGTAGTCCGAGGAAGATCATAGGTTTATGAGTAAAAAATACAACCTCTATTGTTATGAAGGTTTCTCGGGAAATCAATCTTTTAACTTAATCATGTCAATAAAATTCTCAGGTGTCTGTTGGATGAAAGTCCCACCTCCGCTAATTTAAGGAATGATCCCGACTGTCTTCATTCAAATGAGGCCTTTTGTAGAAGCGCAAAGCAAAGCCATGAGAGCTTATGCGCAAAGTGGACAATATCATACCATTGTGGAGACTCGTGTTCATTTAATATGGTATCAAAGTGATGCCCTAAACTTAGACATGTCAATAGAATCCTCAAATGTCGAACAAAATATTGTGAGCCTCGAAAGCATAGTAAAAAAATGACTAAGACTCGAGCCTCGATTAAGGAGAGACGTACTTTGTTCGAGGGGAGATGTTGGATGAAAGTCCTTCGTTGGCTAATATGTGTAAATTACAAGTTTGTGAATTTCGACAGCGATTAAGGGGAGGCGTACTTTGTTCGAGGAGATGTTGGATGAAAGTCCCACGTCAGCTAATATGTGTAAATTACAAGTTTGTGAATTTCGACGTGACTCGAATGTCGAATAAATGGTATATTTTGTTCAAGGGCTCTAGAGAAGGAGCGATCATGAGAGGCTCGACCATGTAGCCGAGATTCAGTGATATTCTTATTTACGTAAAAAATAAGACTAAATAACGAGTTTAGTCTCGGAAGTTATATGAGTTTTATTTAGTAAAATCTTATTATGGTTACTATATTGCGGAAATTTTGAATATGTAGTATTTTTAAATAATTAATTAGAAACTATCAAAGTTAGGGTATATATTACGGCCCATTTTGATTTACCCACCAACTGGGTAGTTATGCACGCTGAAATGGGCCGGGCCAAAAGGCCCATTTAATAGTACTTCCTCTGGCTTGGGGTATAAAACGAATGAACATTGAAAACCCAAACTTAGAGGGAACATTTCGTAGAACATATTTGACTGGCGAGTTTCAGAGCGCGAAGGCACTCGCAAGCGGTATTCCGATCATCAATGGCTACTTATCGATCTCGCATTGAACGACTTCGTTGATGCCGAGGGAATCGTAAGTAAGTCGAGGTTTGCAGTAGAAGAATACGCCGTCCGATTGCCTTCCGGCGGTCGTACTCGAGATCTCTTCATTCATTCTCCCGGTAACGCTATCATTTCTTCTTACGGTGCGAAGGATTCATCTGGTTTTGATAATTTATTCTGTTTTCCAGTGTTTGCGTAG

mRNA sequence

ATGCGGTATGATAGCGCATGGGGGAGGTACGTGGTCCTAAAGGATTGGGCGCCCTACCTACTTTTGACTGTTGAAATGGATTGGGAGGAAACAAAGCGCGAAGGCACTCGCAAGCGGTATTCCGATCATCAATGGCTACTTATCGATCTCGCATTGAACGACTTCGTTGATGCCGAGGGAATCGTAAGTAAGTCGAGGTTTGCAGTAGAAGAATACGCCGTCCGATTGCCTTCCGGCGGTCGTACTCGAGATCTCTTCATTCATTCTCCCGGTAACGCTATCATTTCTTCTTACGGTGCGAAGGATTCATCTGGTTTTGATAATTTATTCTGTTTTCCAGTGTTTGCGTAG

Coding sequence (CDS)

ATGCGGTATGATAGCGCATGGGGGAGGTACGTGGTCCTAAAGGATTGGGCGCCCTACCTACTTTTGACTGTTGAAATGGATTGGGAGGAAACAAAGCGCGAAGGCACTCGCAAGCGGTATTCCGATCATCAATGGCTACTTATCGATCTCGCATTGAACGACTTCGTTGATGCCGAGGGAATCGTAAGTAAGTCGAGGTTTGCAGTAGAAGAATACGCCGTCCGATTGCCTTCCGGCGGTCGTACTCGAGATCTCTTCATTCATTCTCCCGGTAACGCTATCATTTCTTCTTACGGTGCGAAGGATTCATCTGGTTTTGATAATTTATTCTGTTTTCCAGTGTTTGCGTAG

Protein sequence

MRYDSAWGRYVVLKDWAPYLLLTVEMDWEETKREGTRKRYSDHQWLLIDLALNDFVDAEGIVSKSRFAVEEYAVRLPSGGRTRDLFIHSPGNAIISSYGAKDSSGFDNLFCFPVFA

Homology

[Close]

BLAST of Csor.00g151700.m01 vs. NCBI nr
Match: KAG6581128.1 (hypothetical protein SDJN03_21130, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244 bits (623), Expect = 1.33e-81
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MRYDSAWGRYVVLKDWAPYLLLTVEMDWEETKREGTRKRYSDHQWLLIDLALNDFVDAEG 60
           MRYDSAWGRYVVLKDWAPYLLLTVEMDWEETKREGTRKRYSDHQWLLIDLALNDFVDAEG
Sbjct: 1   MRYDSAWGRYVVLKDWAPYLLLTVEMDWEETKREGTRKRYSDHQWLLIDLALNDFVDAEG 60

Query: 61  IVSKSRFAVEEYAVRLPSGGRTRDLFIHSPGNAIISSYGAKDSSGFDNLFCFPVFA 116
           IVSKSRFAVEEYAVRLPSGGRTRDLFIHSPGNAIISSYGAKDSSGFDNLFCFPVFA
Sbjct: 61  IVSKSRFAVEEYAVRLPSGGRTRDLFIHSPGNAIISSYGAKDSSGFDNLFCFPVFA 116

[Close]

BLAST of Csor.00g151700.m01 vs. NCBI nr
Match: KAG6588869.1 (hypothetical protein SDJN03_17434, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.8 bits (133), Expect = 2.39e-07
Identity = 28/46 (60.87%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 70  EEYAVRLPSGGRTRDLFIHSPGNAIISSYGAKDSSGFDNLFCFPVF 115
           E+ AVRLP G   R+L  HSPGNA  SSY AKD S  D  F FPVF
Sbjct: 51  EDNAVRLPYGRSIRELLFHSPGNAFSSSYVAKDYSDLDIFFSFPVF 96

The following BLAST results are available for this feature:

BLAST of Csor.00g151700.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g151700.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581128.1	1.33e-81	100.00	hypothetical protein SDJN03_21130, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6588869.1	2.39e-07	60.87	hypothetical protein SDJN03_17434, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g151700.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g151700.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g151700	Csor.00g151700	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g151700.m01.CDS02	Csor.00g151700.m01.CDS02	CDS
Csor.00g151700.m01.CDS01	Csor.00g151700.m01.CDS01	CDS

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g151700.m01.initial01	Csor.00g151700.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g151700.m01.start_codon01	Csor.00g151700.m01.start_codon01	start_codon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g151700.m01.intron01	Csor.00g151700.m01.intron01	intron

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g151700.m01.terminal01	Csor.00g151700.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g151700.m01.stop_codon01	Csor.00g151700.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g151700.m01	Csor.00g151700.m01-protein	polypeptide