Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGCACGGGAACTTGAGGCACGAGAAGACCCCTTTGTCTGTTTCGGATGGAACGCAATCCTCTTTGAAGGAAAATTGCCAAACGAAGATGACATCGTTGAAACATACAGATGAAGGTTCCTGTTTTACGGCCGATGTTTAAGCACAGGATGAGCATGTGCTGGAAAGTGTGACGAGTGAGCTCCCACACAGTTGTAGCTTCTGAAGAGACAAAGGATTTGCAAGTGTTCTAGCAAACGTCAAGCGTGGAAGTGCCACTTAATGGATATAAGCACCTCATAGGGATGTTAAAGATTTGCAAGAACTTCTTTAGGAGTTGGGGATAACAACGCAACCTGAAACTTACCGTGATACCGAGAAACACAAAAACAGATTCCGAACAAAAGAAACTAAAAATCTTGAGAACAGTGAAGGAAGATAGGGAGTCTCTCTCTGGAAAAACGAACGAACAAAATGCCTGATGAGAAAATTCCAAGGCATAACTGCACAAAGAATATCCTGCGGCTCCGGGGCTTTCAAATGATAACACATTGGAAAATGTGGGTGAACAAGAAAGCAGAGTCAGAAAATATACCGTTCAAATCTCCTTTTCATTTGAGGCATTAGATCTCCGTCATCTTTGATAGTGACAATGTTGATTCAGCACACAGTGAAAAAGTTCCATCTCGCTCGAGGATGACCGAACCTCTAAAAAGTTCTGTGGTGGAAGAGAGACCATCAGTAGGCGGCGGGCAGTTCAAGAGTTCCACAAGTCATTGGATCGTGAAAGCAATGGATCGTGATGCAGAAACCTACGCCGTAGGAGAAACAAAGAACTGGATGGAAGGATAA mRNA sequence ATGCACGGGAACTTGAGGCACGAGAAGACCCCTTTGTCTGTTTCGGATGGAACGCAATCCTCTTTGAAGGAAAATTGCCAAACGAAGATGACATCGTTGAAACATACAGATGAAGCACACAGTGAAAAAGTTCCATCTCGCTCGAGGATGACCGAACCTCTAAAAAGTTCTGTGGTGGAAGAGAGACCATCAGTAGGCGGCGGGCAGTTCAAGAGTTCCACAAGTCATTGGATCGTGAAAGCAATGGATCGTGATGCAGAAACCTACGCCGTAGGAGAAACAAAGAACTGGATGGAAGGATAA Coding sequence (CDS) ATGCACGGGAACTTGAGGCACGAGAAGACCCCTTTGTCTGTTTCGGATGGAACGCAATCCTCTTTGAAGGAAAATTGCCAAACGAAGATGACATCGTTGAAACATACAGATGAAGCACACAGTGAAAAAGTTCCATCTCGCTCGAGGATGACCGAACCTCTAAAAAGTTCTGTGGTGGAAGAGAGACCATCAGTAGGCGGCGGGCAGTTCAAGAGTTCCACAAGTCATTGGATCGTGAAAGCAATGGATCGTGATGCAGAAACCTACGCCGTAGGAGAAACAAAGAACTGGATGGAAGGATAA Protein sequence MHGNLRHEKTPLSVSDGTQSSLKENCQTKMTSLKHTDEAHSEKVPSRSRMTEPLKSSVVEERPSVGGGQFKSSTSHWIVKAMDRDAETYAVGETKNWMEG
Homology
BLAST of Csor.00g108620.m01 vs. NCBI nr
Match: KAG6597074.1 (hypothetical protein SDJN03_10254, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 202 bits (515), Expect = 1.23e-65 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
Query: 1 MHGNLRHEKTPLSVSDGTQSSLKENCQTKMTSLKHTDEAHSEKVPSRSRMTEPLKSSVVE 60
MHGNLRHEKTPLSVSDGTQSSLKENCQTKMTSLKHTDEAHSEKVPSRSRMTEPLKSSVVE
Sbjct: 1 MHGNLRHEKTPLSVSDGTQSSLKENCQTKMTSLKHTDEAHSEKVPSRSRMTEPLKSSVVE 60
Query: 61 ERPSVGGGQFKSSTSHWIVKAMDRDAETYAVGETKNWMEG 100
ERPSVGGGQFKSSTSHWIVKAMDRDAETYAVGETKNWMEG
Sbjct: 61 ERPSVGGGQFKSSTSHWIVKAMDRDAETYAVGETKNWMEG 100
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6597074.1 | 1.23e-65 | 100.00 | hypothetical protein SDJN03_10254, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 11..29 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..71 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 30..49 |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g108620.m01.CDS01 | Csor.00g108620.m01.CDS01 | CDS |
| Csor.00g108620.m01.CDS02 | Csor.00g108620.m01.CDS02 | CDS |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g108620.m01.start_codon01 | Csor.00g108620.m01.start_codon01 | start_codon |
The following initial feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g108620.m01.initial01 | Csor.00g108620.m01.initial01 | initial |
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g108620.m01.intron01 | Csor.00g108620.m01.intron01 | intron |
The following terminal feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g108620.m01.terminal01 | Csor.00g108620.m01.terminal01 | terminal |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g108620.m01.stop_codon01 | Csor.00g108620.m01.stop_codon01 | stop_codon |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g108620.m01 | Csor.00g108620.m01-protein | polypeptide |
|
