Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAAACAGCTGCTGGTATCTCCTCGACAACCTGTCTTTTGGCAATTTAATTTGTTATTCTATGGCTCTTATGTGTGACATCAATTATTTTCTCTTACATATGTGAAAATGAAGTAGTAAAAGAGAGAGTCGGAGAATATATGACATTTTTGCTTGTTAAAACAAGTGCCTTCAGGATTCGGACGTCTTTTAACTCCCTTGCATATGTTTCCATTATACCTTAACACTTCAAAAAGATCTCCCCTGCCCATGTGGCTGCCCGATTGAATATTAATTTTTAGTTTTTGTCTTCTACGTCCAGTTATTGTTCGAGCCTCCTTGGATGATTTAGGGGATATCTAAATGATTTTGAATATTAAGTTTGTTGAAGTTAATAGTTTTAAGTCATAAATGCTGAGGACAAGAAGGCATCCCTTAGGTGTTCGTGTTTGTGTTATGCAAGTCTCGCTGAAGATCCTAAAGAATGTTTCTTTCTTGTTCTTTTGTCTTTGCTTTAGTTCCTCTTACATGTCACTTCTCATGGGAAATGATTGAAGCTCACACAACTCTTTTTCCTTCTTCCTATAATCATCAATCTTTGTTTTTTCAGTATCTTTGGTTTCTGTTTAGTTAACTCCTTATTTGTCACGGGATGAGATTCAATTATCTTCTAGACCTGTATCATACTTAAAATCTAGTTGCGGGTCGACGGCTGGCAGGATCATTGCTTTGTCCTCTAAATACACTCACATGTCTTTATACCAATCAAGCTGTTGTTTCTGAGACAACTTAGTTGTATGATGAAAGCATTGCTATGATTTAAAACATCTTCCCAACCATACAGTTGGGGAGATGTTTTTCACGTCAAAGATTAGATGGTCATTTTCCCGTCATATGCCTGTGCTATGGTTGATTCCTTATATCGGGATTTCAATTTTATGGAAAGATCATAGATATATGAATAAATATCAATGTTGATGAATATTTCCGTTAATCAAAAGATTTGTAAAAATTATTTAACTTAATAATTACGATGTTCTTACTTTCAGGTTTAGTTATATATCGTGTTAGTAGTATTTATAAAAGATATTAGAGATAACGATTAGTAAGTAATATCGATGTCGAACACTCCTATTCACAAATATATTGATTCAGTTTGGTCTCTTGATTTTTTGTAGTATGTGCTTTTCACCGTGGAGACTCTACTACTTGGTCAGCTATGTGTGTAGCTGCGAAGAACTTGTGTACTTGCTTCCTGATTGTTGGATTTGACGGATGTAATATGCTTTGATTTCTACAAACAATCTTATATCCATTTTTTCACTTTCTGTTTAGGTTACCACTTTTCATTGTCTGCGGGAGATTTTCATTTGTTTTTTGCATAAATGTCAAAATTTGAACTCTTTTGGTTGCTCTTTCAAATTCCCTGTCAAGAACACTCTTTTGGAAGCCTTTCCAAGCATGCTTCTACTTGCCTTCCCTTTCTTAGTTGCTAGCTGTAACACCTTTCTTTTGTTCATATTGTTCTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTAGGCAGAGTGAAAAAATCGGTATAGTAACTATATTTTGATTCCTGTTTCTTTGTTGGATGTGTATGTCAAATGTGAAAGCATTGAGCAACCAAATCTTATCTTTAATGTCCTGTCAGAGAAAGATACTGTTTCTTGGAATACCATGATTCAGGGCTCTGCGGTTCAATTGATTTTGCCCAAACAAGCAATAGATCCTTTCTTCCAAATGAAATCATAGAATTTGAAGCCTGATTGCCATGCGACGGTTTGGTGTCTTGTCTGCTTGTGCAAGATTAGGAGCTTTAGCTTTAGGGCATCTGGTCCAGCAGCCTAATGGATAGACGTGAGTTCTTGCAGAGTCTCGTTTGCTAAACAGTTTTAATTGACATGTACTCCAAACGTGGAAATGAGAAGCAATGGAAAGGAATGACTGTGTGGTTTGAAACGCCATGATAGTTGGCGATTAATGGAATTGTTAACGGACTTCTAGAAGTCCGAGACAGATCAAACTTATTGTCGGAGAAAATATATGCAAAACTCGATGAATCTGGTAGAGAACTGAAAGCAGCTGGTCATGTGCCAACTACAGAGGTTGTTCTTTTTGTCATTGCAGACAAGGGGAAAAGGAACATTTCCTTCGTTACCAAATTGAGAAGCTAG
mRNA sequence
ATGTCAAAACAGCTGCTGTATGTGCTTTTCACCGTGGAGACTCTACTACTTGAAGTCCGAGACAGATCAAACTTATTGTCGGAGAAAATATATGCAAAACTCGATGAATCTGGTAGAGAACTGAAAGCAGCTGGTCATGTGCCAACTACAGAGGTTGTTCTTTTTGTCATTGCAGACAAGGGGAAAAGGAACATTTCCTTCGTTACCAAATTGAGAAGCTAG
Coding sequence (CDS)
ATGTCAAAACAGCTGCTGTATGTGCTTTTCACCGTGGAGACTCTACTACTTGAAGTCCGAGACAGATCAAACTTATTGTCGGAGAAAATATATGCAAAACTCGATGAATCTGGTAGAGAACTGAAAGCAGCTGGTCATGTGCCAACTACAGAGGTTGTTCTTTTTGTCATTGCAGACAAGGGGAAAAGGAACATTTCCTTCGTTACCAAATTGAGAAGCTAG
Protein sequence
MSKQLLYVLFTVETLLLEVRDRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADKGKRNISFVTKLRS
Homology
BLAST of Csor.00g093890.m01 vs. ExPASy Swiss-Prot
Match:
Q9SR82 (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H84 PE=3 SV=1)
HSP 1 Score: 48.5 bits (114), Expect = 3.7e-05
Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 0
Query: 21 DRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADKGKRNI 66
D+S+ LS+KIYAKL++ G E++ G VPTTE V F + ++ K +
Sbjct: 569 DKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERV 613
BLAST of Csor.00g093890.m01 vs. NCBI nr
Match:
KAG6580445.1 (hypothetical protein SDJN03_20447, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 137 bits (346), Expect = 1.09e-40
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query: 1 MSKQLLYVLFTVETLLLEVRDRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADK 60
MSKQLLYVLFTVETLLLEVRDRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADK
Sbjct: 1 MSKQLLYVLFTVETLLLEVRDRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADK 60
Query: 61 GKRNISFVTKLRS 73
GKRNISFVTKLRS
Sbjct: 61 GKRNISFVTKLRS 73
BLAST of Csor.00g093890.m01 vs. NCBI nr
Match:
XP_022951275.1 (putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita moschata] >XP_022951285.1 putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita moschata])
HSP 1 Score: 63.9 bits (154), Expect = 1.05e-09
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0
Query: 19 VRDRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADKGKRN 64
V D+S+ LS+KIYAKLDE GRELKAAGHVPTTE VLF I ++ K +
Sbjct: 570 VGDKSHSLSDKIYAKLDELGRELKAAGHVPTTEFVLFDIEEEEKEH 615
BLAST of Csor.00g093890.m01 vs. NCBI nr
Match:
KAG6596322.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 63.9 bits (154), Expect = 1.05e-09
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0
Query: 19 VRDRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADKGKRN 64
V D+S+ LS+KIYAKLDE GRELKAAGHVPTTE VLF I ++ K +
Sbjct: 570 VGDKSHSLSDKIYAKLDELGRELKAAGHVPTTEFVLFDIEEEEKEH 615
BLAST of Csor.00g093890.m01 vs. NCBI nr
Match:
KAG7027873.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 63.9 bits (154), Expect = 1.05e-09
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0
Query: 19 VRDRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADKGKRN 64
V D+S+ LS+KIYAKLDE GRELKAAGHVPTTE VLF I ++ K +
Sbjct: 570 VGDKSHSLSDKIYAKLDELGRELKAAGHVPTTEFVLFDIEEEEKEH 615
BLAST of Csor.00g093890.m01 vs. NCBI nr
Match:
KGN58718.1 (hypothetical protein Csa_001575 [Cucumis sativus])
HSP 1 Score: 63.5 bits (153), Expect = 1.43e-09
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0
Query: 19 VRDRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADKGKRN 64
V D+S+ LSEKIYAKLDE GRELKA GHVPTTE VLF I ++ K +
Sbjct: 526 VGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEH 571
BLAST of Csor.00g093890.m01 vs. ExPASy TrEMBL
Match:
A0A6J1GIB8 (putative pentatricopeptide repeat-containing protein At3g08820 OS=Cucurbita moschata OX=3662 GN=LOC111454160 PE=3 SV=1)
HSP 1 Score: 63.9 bits (154), Expect = 5.08e-10
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0
Query: 19 VRDRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADKGKRN 64
V D+S+ LS+KIYAKLDE GRELKAAGHVPTTE VLF I ++ K +
Sbjct: 570 VGDKSHSLSDKIYAKLDELGRELKAAGHVPTTEFVLFDIEEEEKEH 615
BLAST of Csor.00g093890.m01 vs. ExPASy TrEMBL
Match:
A0A0A0LA44 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G730820 PE=3 SV=1)
HSP 1 Score: 63.5 bits (153), Expect = 6.93e-10
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0
Query: 19 VRDRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADKGKRN 64
V D+S+ LSEKIYAKLDE GRELKA GHVPTTE VLF I ++ K +
Sbjct: 526 VGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEH 571
BLAST of Csor.00g093890.m01 vs. ExPASy TrEMBL
Match:
A0A5A7TLY9 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005630 PE=3 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 1.30e-09
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0
Query: 19 VRDRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADKGKRN 64
V D S+ LSEKIYAKLDE GRELKA GHVPTTE VLF I ++ K +
Sbjct: 570 VGDNSHSLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEH 615
BLAST of Csor.00g093890.m01 vs. ExPASy TrEMBL
Match:
A0A5D3DMV5 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00430 PE=3 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 1.30e-09
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0
Query: 19 VRDRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADKGKRN 64
V D S+ LSEKIYAKLDE GRELKA GHVPTTE VLF I ++ K +
Sbjct: 570 VGDNSHSLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEH 615
BLAST of Csor.00g093890.m01 vs. ExPASy TrEMBL
Match:
A0A1S3B518 (putative pentatricopeptide repeat-containing protein At3g08820 OS=Cucumis melo OX=3656 GN=LOC103486253 PE=3 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 1.30e-09
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0
Query: 19 VRDRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADKGKRN 64
V D S+ LSEKIYAKLDE GRELKA GHVPTTE VLF I ++ K +
Sbjct: 570 VGDNSHSLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEH 615
BLAST of Csor.00g093890.m01 vs. TAIR 10
Match:
AT3G08820.1 (Pentatricopeptide repeat (PPR) superfamily protein )
HSP 1 Score: 48.5 bits (114), Expect = 2.6e-06
Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 0
Query: 21 DRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADKGKRNI 66
D+S+ LS+KIYAKL++ G E++ G VPTTE V F + ++ K +
Sbjct: 569 DKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERV 613
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q9SR82 | 3.7e-05 | 46.67 | Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis th... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAG6580445.1 | 1.09e-40 | 100.00 | hypothetical protein SDJN03_20447, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022951275.1 | 1.05e-09 | 69.57 | putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita moscha... | [more] |
| KAG6596322.1 | 1.05e-09 | 69.57 | putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros... | [more] |
| KAG7027873.1 | 1.05e-09 | 69.57 | putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros... | [more] |
| KGN58718.1 | 1.43e-09 | 69.57 | hypothetical protein Csa_001575 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1GIB8 | 5.08e-10 | 69.57 | putative pentatricopeptide repeat-containing protein At3g08820 OS=Cucurbita mosc... | [more] |
| A0A0A0LA44 | 6.93e-10 | 69.57 | DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G7308... | [more] |
| A0A5A7TLY9 | 1.30e-09 | 69.57 | Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa... | [more] |
| A0A5D3DMV5 | 1.30e-09 | 69.57 | Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa... | [more] |
| A0A1S3B518 | 1.30e-09 | 69.57 | putative pentatricopeptide repeat-containing protein At3g08820 OS=Cucumis melo O... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G08820.1 | 2.6e-06 | 46.67 | Pentatricopeptide repeat (PPR) superfamily protein | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g093890.m01.CDS01 | Csor.00g093890.m01.CDS01 | CDS |
| Csor.00g093890.m01.CDS02 | Csor.00g093890.m01.CDS02 | CDS |
| Csor.00g093890.m01.CDS03 | Csor.00g093890.m01.CDS03 | CDS |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g093890.m01.stop_codon01 | Csor.00g093890.m01.stop_codon01 | stop_codon |
The following terminal feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g093890.m01.terminal01 | Csor.00g093890.m01.terminal01 | terminal |
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g093890.m01.intron01 | Csor.00g093890.m01.intron01 | intron |
| Csor.00g093890.m01.intron02 | Csor.00g093890.m01.intron02 | intron |
The following internal feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g093890.m01.internal01 | Csor.00g093890.m01.internal01 | internal |
The following initial feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g093890.m01.initial01 | Csor.00g093890.m01.initial01 | initial |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g093890.m01.start_codon01 | Csor.00g093890.m01.start_codon01 | start_codon |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g093890.m01 | Csor.00g093890.m01-protein | polypeptide |
