Csor.00g093890.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
|
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCAAAACAGCTGCTGGTATCTCCTCGACAACCTGTCTTTTGGCAATTTAATTTGTTATTCTATGGCTCTTATGTGTGACATCAATTATTTTCTCTTACATATGTGAAAATGAAGTAGTAAAAGAGAGAGTCGGAGAATATATGACATTTTTGCTTGTTAAAACAAGTGCCTTCAGGATTCGGACGTCTTTTAACTCCCTTGCATATGTTTCCATTATACCTTAACACTTCAAAAAGATCTCCCCTGCCCATGTGGCTGCCCGATTGAATATTAATTTTTAGTTTTTGTCTTCTACGTCCAGTTATTGTTCGAGCCTCCTTGGATGATTTAGGGGATATCTAAATGATTTTGAATATTAAGTTTGTTGAAGTTAATAGTTTTAAGTCATAAATGCTGAGGACAAGAAGGCATCCCTTAGGTGTTCGTGTTTGTGTTATGCAAGTCTCGCTGAAGATCCTAAAGAATGTTTCTTTCTTGTTCTTTTGTCTTTGCTTTAGTTCCTCTTACATGTCACTTCTCATGGGAAATGATTGAAGCTCACACAACTCTTTTTCCTTCTTCCTATAATCATCAATCTTTGTTTTTTCAGTATCTTTGGTTTCTGTTTAGTTAACTCCTTATTTGTCACGGGATGAGATTCAATTATCTTCTAGACCTGTATCATACTTAAAATCTAGTTGCGGGTCGACGGCTGGCAGGATCATTGCTTTGTCCTCTAAATACACTCACATGTCTTTATACCAATCAAGCTGTTGTTTCTGAGACAACTTAGTTGTATGATGAAAGCATTGCTATGATTTAAAACATCTTCCCAACCATACAGTTGGGGAGATGTTTTTCACGTCAAAGATTAGATGGTCATTTTCCCGTCATATGCCTGTGCTATGGTTGATTCCTTATATCGGGATTTCAATTTTATGGAAAGATCATAGATATATGAATAAATATCAATGTTGATGAATATTTCCGTTAATCAAAAGATTTGTAAAAATTATTTAACTTAATAATTACGATGTTCTTACTTTCAGGTTTAGTTATATATCGTGTTAGTAGTATTTATAAAAGATATTAGAGATAACGATTAGTAAGTAATATCGATGTCGAACACTCCTATTCACAAATATATTGATTCAGTTTGGTCTCTTGATTTTTTGTAGTATGTGCTTTTCACCGTGGAGACTCTACTACTTGGTCAGCTATGTGTGTAGCTGCGAAGAACTTGTGTACTTGCTTCCTGATTGTTGGATTTGACGGATGTAATATGCTTTGATTTCTACAAACAATCTTATATCCATTTTTTCACTTTCTGTTTAGGTTACCACTTTTCATTGTCTGCGGGAGATTTTCATTTGTTTTTTGCATAAATGTCAAAATTTGAACTCTTTTGGTTGCTCTTTCAAATTCCCTGTCAAGAACACTCTTTTGGAAGCCTTTCCAAGCATGCTTCTACTTGCCTTCCCTTTCTTAGTTGCTAGCTGTAACACCTTTCTTTTGTTCATATTGTTCTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTAGGCAGAGTGAAAAAATCGGTATAGTAACTATATTTTGATTCCTGTTTCTTTGTTGGATGTGTATGTCAAATGTGAAAGCATTGAGCAACCAAATCTTATCTTTAATGTCCTGTCAGAGAAAGATACTGTTTCTTGGAATACCATGATTCAGGGCTCTGCGGTTCAATTGATTTTGCCCAAACAAGCAATAGATCCTTTCTTCCAAATGAAATCATAGAATTTGAAGCCTGATTGCCATGCGACGGTTTGGTGTCTTGTCTGCTTGTGCAAGATTAGGAGCTTTAGCTTTAGGGCATCTGGTCCAGCAGCCTAATGGATAGACGTGAGTTCTTGCAGAGTCTCGTTTGCTAAACAGTTTTAATTGACATGTACTCCAAACGTGGAAATGAGAAGCAATGGAAAGGAATGACTGTGTGGTTTGAAACGCCATGATAGTTGGCGATTAATGGAATTGTTAACGGACTTCTAGAAGTCCGAGACAGATCAAACTTATTGTCGGAGAAAATATATGCAAAACTCGATGAATCTGGTAGAGAACTGAAAGCAGCTGGTCATGTGCCAACTACAGAGGTTGTTCTTTTTGTCATTGCAGACAAGGGGAAAAGGAACATTTCCTTCGTTACCAAATTGAGAAGCTAGATGTCAAAACAGCTGCTGTATGTGCTTTTCACCGTGGAGACTCTACTACTTGAAGTCCGAGACAGATCAAACTTATTGTCGGAGAAAATATATGCAAAACTCGATGAATCTGGTAGAGAACTGAAAGCAGCTGGTCATGTGCCAACTACAGAGGTTGTTCTTTTTGTCATTGCAGACAAGGGGAAAAGGAACATTTCCTTCGTTACCAAATTGAGAAGCTAG ATGTCAAAACAGCTGCTGTATGTGCTTTTCACCGTGGAGACTCTACTACTTGAAGTCCGAGACAGATCAAACTTATTGTCGGAGAAAATATATGCAAAACTCGATGAATCTGGTAGAGAACTGAAAGCAGCTGGTCATGTGCCAACTACAGAGGTTGTTCTTTTTGTCATTGCAGACAAGGGGAAAAGGAACATTTCCTTCGTTACCAAATTGAGAAGCTAG MSKQLLYVLFTVETLLLEVRDRSNLLSEKIYAKLDESGRELKAAGHVPTTEVVLFVIADKGKRNISFVTKLRS Homology
BLAST of Csor.00g093890.m01 vs. ExPASy Swiss-Prot
Match: Q9SR82 (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H84 PE=3 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 3.7e-05 Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 0
BLAST of Csor.00g093890.m01 vs. NCBI nr
Match: KAG6580445.1 (hypothetical protein SDJN03_20447, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 137 bits (346), Expect = 1.09e-40 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
BLAST of Csor.00g093890.m01 vs. NCBI nr
Match: XP_022951275.1 (putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita moschata] >XP_022951285.1 putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita moschata]) HSP 1 Score: 63.9 bits (154), Expect = 1.05e-09 Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0
BLAST of Csor.00g093890.m01 vs. NCBI nr
Match: KAG6596322.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 63.9 bits (154), Expect = 1.05e-09 Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0
BLAST of Csor.00g093890.m01 vs. NCBI nr
Match: KAG7027873.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 63.9 bits (154), Expect = 1.05e-09 Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0
BLAST of Csor.00g093890.m01 vs. NCBI nr
Match: KGN58718.1 (hypothetical protein Csa_001575 [Cucumis sativus]) HSP 1 Score: 63.5 bits (153), Expect = 1.43e-09 Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0
BLAST of Csor.00g093890.m01 vs. ExPASy TrEMBL
Match: A0A6J1GIB8 (putative pentatricopeptide repeat-containing protein At3g08820 OS=Cucurbita moschata OX=3662 GN=LOC111454160 PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 5.08e-10 Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0
BLAST of Csor.00g093890.m01 vs. ExPASy TrEMBL
Match: A0A0A0LA44 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G730820 PE=3 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 6.93e-10 Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0
BLAST of Csor.00g093890.m01 vs. ExPASy TrEMBL
Match: A0A5A7TLY9 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005630 PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 1.30e-09 Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0
BLAST of Csor.00g093890.m01 vs. ExPASy TrEMBL
Match: A0A5D3DMV5 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00430 PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 1.30e-09 Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0
BLAST of Csor.00g093890.m01 vs. ExPASy TrEMBL
Match: A0A1S3B518 (putative pentatricopeptide repeat-containing protein At3g08820 OS=Cucumis melo OX=3656 GN=LOC103486253 PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 1.30e-09 Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0
BLAST of Csor.00g093890.m01 vs. TAIR 10
Match: AT3G08820.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 48.5 bits (114), Expect = 2.6e-06 Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following terminal feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following internal feature(s) are a part of this mRNA:
The following initial feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|