Csor.00g017410.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g017410.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Epidermal patterning factor-like protein
Location	Csor_Chr13: 149026 .. 149485 (+)
Sequence length	345
RNA-Seq Expression	Csor.00g017410.m01
Synteny	Csor.00g017410.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTCAATAGAATCAATGAACCTAAACCCATCTTCTTCTTCTTGTTTTTCATTATCTTCATATTGTCCTCTGACAACACTAGGCGCTGCTCATCTGCTGAATCCGGCTCCGGCCATGCACATACTCAGGTAAATTTATTTTAGTTCCAATATTATAATGGAGGATTCATCATCTTCCTCGTATATTTTCTTACAAATACCTATTTTTGCACCCAAAAAATTCTAATGCATTATACTATGTCAGCCCATCTCTAATCTTGAAGATCAAGAGTTGACTTTGTCAAGAAGAGGATTGAGTAGGCTGGGATCGTCGCCACCAAACTGCGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGCCAGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA

mRNA sequence

ATGAAGTTCAATAGAATCAATGAACCTAAACCCATCTTCTTCTTCTTGTTTTTCATTATCTTCATATTGTCCTCTGACAACACTAGGCGCTGCTCATCTGCTGAATCCGGCTCCGGCCATGCACATACTCAGCCCATCTCTAATCTTGAAGATCAAGAGTTGACTTTGTCAAGAAGAGGATTGAGTAGGCTGGGATCGTCGCCACCAAACTGCGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGCCAGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA

Coding sequence (CDS)

ATGAAGTTCAATAGAATCAATGAACCTAAACCCATCTTCTTCTTCTTGTTTTTCATTATCTTCATATTGTCCTCTGACAACACTAGGCGCTGCTCATCTGCTGAATCCGGCTCCGGCCATGCACATACTCAGCCCATCTCTAATCTTGAAGATCAAGAGTTGACTTTGTCAAGAAGAGGATTGAGTAGGCTGGGATCGTCGCCACCAAACTGCGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGCCAGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA

Protein sequence

MKFNRINEPKPIFFFLFFIIFILSSDNTRRCSSAESGSGHAHTQPISNLEDQELTLSRRGLSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP

Homology

[Close]

BLAST of Csor.00g017410.m01 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-16
Identity = 37/57 (64.91%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 58  RRGLSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 115
           RR L  LGSSPP C SKCG CTPC  V V VPPG     + +P+ WRCKCGNKLYMP
Sbjct: 100 RRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 156

[Close]

BLAST of Csor.00g017410.m01 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-12
Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 65  GSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 115
           GSSPP C SKCG C PC  V V + PG S   + +P+ WRCKCGNKL+MP
Sbjct: 60  GSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

[Close]

BLAST of Csor.00g017410.m01 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.5e-10
Identity = 38/103 (36.89%), Postives = 51/103 (49.51%), Query Frame = 0


Query: 12  IFFFLFFIIFILSSDNTRRCSSAESGSGHAHTQPISNLEDQELTLSRRGLSRLGSSPPNC 71
           +  + F + F  SS  + +  S   G G       S L  Q   + ++ L   GS PP C
Sbjct: 8   LIVYAFLLFFSSSSAASLQRPSGGLGQGKKEIAR-SGLPGQ--IVDQKRLGGPGSVPPMC 67

Query: 72  DSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 115
             KCG C PC  V V + PG     + +P+ WRCKCGNKL+MP
Sbjct: 68  RLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFMP 107

[Close]

BLAST of Csor.00g017410.m01 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.1e-06
Identity = 33/99 (33.33%), Postives = 46/99 (46.46%), Query Frame = 0


Query: 13  FFFLFFIIFILSSDNTRRCSSAESGSGHAHTQPISNLEDQELTLSRRGLSRLGSSPPNCD 72
           FFF+F II  +      +  +AE  S      P  N E  E+   RR   R+GS PP+C+
Sbjct: 11  FFFVFPIIIYIGPAEIIKPQAAEENSRRRILNPNENKE--EIVKRRR---RIGSKPPSCE 70

Query: 73  SKCGSCTPCTTV----LVSVPPGPSGVGDDFPKVWRCKC 108
            KC  C PC  +    + S+P       +  P+ WRC C
Sbjct: 71  KKCYGCEPCEAIQFPTISSIPHLSPHYANYQPEGWRCHC 104

[Close]

BLAST of Csor.00g017410.m01 vs. ExPASy Swiss-Prot
Match: Q8S8I4 (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.2e-04
Identity = 32/105 (30.48%), Postives = 44/105 (41.90%), Query Frame = 0


Query: 10  KPIFFFLFFIIFILSSDNTRRCSSAESGSGHAHTQPISNLEDQELTLSRR--GLSRLGSS 69
           K +    FF+ F   S   R   ++ S   H H      L+ Q     RR   +   GS 
Sbjct: 2   KSLLLLAFFLSFFFGSLLARHLPTS-SHPSHHHVGMTGALKRQR----RRPDTVQVAGSR 61

Query: 70  PPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLY 113
            P+C   CGSC+PC  V+VS         +  P  ++C C NK Y
Sbjct: 62  LPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSY 101

[Close]

BLAST of Csor.00g017410.m01 vs. NCBI nr
Match: KAG6583319.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243 bits (621), Expect = 2.31e-81
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MKFNRINEPKPIFFFLFFIIFILSSDNTRRCSSAESGSGHAHTQPISNLEDQELTLSRRG 60
           MKFNRINEPKPIFFFLFFIIFILSSDNTRRCSSAESGSGHAHTQPISNLEDQELTLSRRG
Sbjct: 1   MKFNRINEPKPIFFFLFFIIFILSSDNTRRCSSAESGSGHAHTQPISNLEDQELTLSRRG 60

Query: 61  LSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 114
           LSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP
Sbjct: 61  LSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 114

[Close]

BLAST of Csor.00g017410.m01 vs. NCBI nr
Match: KAG6583317.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590332.1 EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229 bits (584), Expect = 9.57e-76
Identity = 110/114 (96.49%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MKFNRINEPKPIFFFLFFIIFILSSDNTRRCSSAESGSGHAHTQPISNLEDQELTLSRRG 60
           MKFNRINEPKPIFFFLFFIIFILSSDNTRRCSSAESG  HAHTQPISN EDQELTLS RG
Sbjct: 1   MKFNRINEPKPIFFFLFFIIFILSSDNTRRCSSAESG--HAHTQPISNHEDQELTLSGRG 60

Query: 61  LSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 114
           LSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP
Sbjct: 61  LSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 112

[Close]

BLAST of Csor.00g017410.m01 vs. NCBI nr
Match: KAG6583316.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590333.1 EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 226 bits (576), Expect = 1.59e-74
Identity = 109/114 (95.61%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MKFNRINEPKPIFFFLFFIIFILSSDNTRRCSSAESGSGHAHTQPISNLEDQELTLSRRG 60
           MKFNRINEPKPIFFFLFFIIFILSSDNTRRCSSAESG  HAHTQPISN EDQELTLS RG
Sbjct: 1   MKFNRINEPKPIFFFLFFIIFILSSDNTRRCSSAESG--HAHTQPISNHEDQELTLSGRG 60

Query: 61  LSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 114
           LSRLGSSPPNCDSKCGSCTPCTTVLVSVP GPSGVGDDFPKVWRCKCGNKLYMP
Sbjct: 61  LSRLGSSPPNCDSKCGSCTPCTTVLVSVPSGPSGVGDDFPKVWRCKCGNKLYMP 112

[Close]

BLAST of Csor.00g017410.m01 vs. NCBI nr
Match: KAG6583645.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211 bits (537), Expect = 1.42e-68
Identity = 99/114 (86.84%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 1   MKFNRINEPKPIFFFLFFIIFILSSDNTRRCSSAESGSGHAHTQPISNLEDQELTLSRRG 60
           MKFNR NEPKPIFFFLFFIIFILSSDNTRRCSS ESG  HAH +PI+N EDQELTL RRG
Sbjct: 1   MKFNRTNEPKPIFFFLFFIIFILSSDNTRRCSSTESG--HAHIEPITNHEDQELTLPRRG 60

Query: 61  LSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 114
           L  LGSSPPNC SKCGSCTPCTT+LVSVPPGP GVGDDFP+VWRCKCGNKLYMP
Sbjct: 61  LGGLGSSPPNCTSKCGSCTPCTTILVSVPPGPPGVGDDFPEVWRCKCGNKLYMP 112

[Close]

BLAST of Csor.00g017410.m01 vs. NCBI nr
Match: KAG6583315.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207 bits (527), Expect = 4.75e-67
Identity = 98/114 (85.96%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 1   MKFNRINEPKPIFFFLFFIIFILSSDNTRRCSSAESGSGHAHTQPISNLEDQELTLSRRG 60
           MKFNR N+PKPIFFFLFFIIFILSSDNTRRCSSAESG  HAHTQPI+N EDQELTL RRG
Sbjct: 1   MKFNRNNDPKPIFFFLFFIIFILSSDNTRRCSSAESG--HAHTQPIANHEDQELTLPRRG 60

Query: 61  LSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 114
           L   GSSPPNC SKCGSCTPCTTVLVSV PGP G+GDDFP+VWRCKCGNK+YMP
Sbjct: 61  LGGPGSSPPNCASKCGSCTPCTTVLVSVTPGPPGIGDDFPEVWRCKCGNKIYMP 112

[Close]

BLAST of Csor.00g017410.m01 vs. ExPASy TrEMBL
Match: A0A0A0LXR9 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G533610 PE=3 SV=1)

HSP 1 Score: 112 bits (280), Expect = 2.51e-29
Identity = 69/149 (46.31%), Postives = 78/149 (52.35%), Query Frame = 0


Query: 1   MKFNRIN-------EPKPI----------FFFLFFIIFILSS-------------DNTRR 60
           M+FNR          PKPI          FFFLF ++FILSS             DNTR 
Sbjct: 1   MEFNRSRVVIENKTNPKPILILILIFISFFFFLFLMVFILSSFCSSIMSSYNGDSDNTRS 60

Query: 61  CSSAESGSGHAHTQPISNLED-----QELTLSRRGLSRLGSSPPNCDSKCGSCTPCTTVL 114
           CS  +S         I+N ED     Q + L RRGL   GSSPP C SKCG CTPCT V 
Sbjct: 61  CSFGKS----VQYSIIANCEDDHHQDQFMRLPRRGLGGPGSSPPRCASKCGKCTPCTAVH 120

[Close]

BLAST of Csor.00g017410.m01 vs. ExPASy TrEMBL
Match: A0A5D3BE35 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00580 PE=3 SV=1)

HSP 1 Score: 105 bits (262), Expect = 4.55e-27
Identity = 52/92 (56.52%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 25  SDNTRRCSSAESGSGHAHTQPISNLEDQE--LTLSRRGLSRLGSSPPNCDSKCGSCTPCT 84
           SDNTR CS  E+         I+N EDQ+  + L RRGL   GSSPP C SKCG CTPCT
Sbjct: 20  SDNTRSCSFVEA----VQYPMIANCEDQDQFMRLPRRGLGGPGSSPPRCTSKCGKCTPCT 79

Query: 85  TVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 114
            V V VPPG     + +P+ WRCKCGNKLYMP
Sbjct: 80  AVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 107

[Close]

BLAST of Csor.00g017410.m01 vs. ExPASy TrEMBL
Match: A0A6J1G964 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452110 PE=3 SV=1)

HSP 1 Score: 101 bits (252), Expect = 5.26e-25
Identity = 60/132 (45.45%), Postives = 73/132 (55.30%), Query Frame = 0


Query: 12  IFFFLFFIIF---ILSSDNTRRCSSAESGSGHAHTQPISNL------------------- 71
           +F FL  I F   ++SS + R CSSA++G  H + QPI++                    
Sbjct: 23  LFLFLILISFSCSMISSADNRCCSSAKAG--HTNLQPITSSATWKLPADGRRVAQPATAE 82

Query: 72  ------EDQEL-TLSRRGLSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKV 114
                 EDQEL TL+RR L   GSSPP C S CG CTPCT V V VPPG     + +P+ 
Sbjct: 83  VVVGDHEDQELRTLARRELGGPGSSPPRCTSMCGKCTPCTAVHVPVPPGTPVTAEYYPEA 142

[Close]

BLAST of Csor.00g017410.m01 vs. ExPASy TrEMBL
Match: A0A6J1KAS0 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111492606 PE=3 SV=1)

HSP 1 Score: 101 bits (251), Expect = 7.05e-25
Identity = 60/132 (45.45%), Postives = 73/132 (55.30%), Query Frame = 0


Query: 12  IFFFLFFIIF---ILSSDNTRRCSSAESGSGHAHTQPISNL------------------- 71
           +F FL  I F   ++SS + R CSSA++G  H + QPI++                    
Sbjct: 21  LFLFLILISFSCSMISSADNRCCSSAKAG--HTNLQPITSSATWKLPADGRRVAQPNAAE 80

Query: 72  ------EDQEL-TLSRRGLSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKV 114
                 EDQEL TL+RR L   GSSPP C S CG CTPCT V V VPPG     + +P+ 
Sbjct: 81  VVVGDHEDQELRTLARRELGGPGSSPPRCASMCGKCTPCTAVHVPVPPGTPVTAEYYPEA 140

[Close]

BLAST of Csor.00g017410.m01 vs. ExPASy TrEMBL
Match: A0A6J1G961 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452110 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.54e-23
Identity = 59/134 (44.03%), Postives = 70/134 (52.24%), Query Frame = 0


Query: 12  IFFFLFFIIFILS-----SDNTRRCSSAESGSGHAHTQPISNL----------------- 71
           +F FL  I F  S       + R CSSA++G  H + QPI++                  
Sbjct: 23  LFLFLILISFSCSMISSAGPDNRCCSSAKAG--HTNLQPITSSATWKLPADGRRVAQPAT 82

Query: 72  --------EDQEL-TLSRRGLSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFP 114
                   EDQEL TL+RR L   GSSPP C S CG CTPCT V V VPPG     + +P
Sbjct: 83  AEVVVGDHEDQELRTLARRELGGPGSSPPRCTSMCGKCTPCTAVHVPVPPGTPVTAEYYP 142

[Close]

BLAST of Csor.00g017410.m01 vs. TAIR 10
Match: AT2G30370.1 (allergen-related )

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-17
Identity = 37/57 (64.91%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 58  RRGLSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 115
           RR L  LGSSPP C SKCG CTPC  V V VPPG     + +P+ WRCKCGNKLYMP
Sbjct: 174 RRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 230

[Close]

BLAST of Csor.00g017410.m01 vs. TAIR 10
Match: AT2G30370.2 (allergen-related )

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-17
Identity = 37/57 (64.91%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 58  RRGLSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 115
           RR L  LGSSPP C SKCG CTPC  V V VPPG     + +P+ WRCKCGNKLYMP
Sbjct: 100 RRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 156

[Close]

BLAST of Csor.00g017410.m01 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-13
Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 65  GSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 115
           GSSPP C SKCG C PC  V V + PG S   + +P+ WRCKCGNKL+MP
Sbjct: 60  GSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

[Close]

BLAST of Csor.00g017410.m01 vs. TAIR 10
Match: AT3G22820.1 (allergen-related )

HSP 1 Score: 65.5 bits (158), Expect = 3.2e-11
Identity = 38/103 (36.89%), Postives = 51/103 (49.51%), Query Frame = 0


Query: 12  IFFFLFFIIFILSSDNTRRCSSAESGSGHAHTQPISNLEDQELTLSRRGLSRLGSSPPNC 71
           +  + F + F  SS  + +  S   G G       S L  Q   + ++ L   GS PP C
Sbjct: 8   LIVYAFLLFFSSSSAASLQRPSGGLGQGKKEIAR-SGLPGQ--IVDQKRLGGPGSVPPMC 67

Query: 72  DSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP 115
             KCG C PC  V V + PG     + +P+ WRCKCGNKL+MP
Sbjct: 68  RLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFMP 107

[Close]

BLAST of Csor.00g017410.m01 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). )

HSP 1 Score: 52.8 bits (125), Expect = 2.2e-07
Identity = 33/99 (33.33%), Postives = 46/99 (46.46%), Query Frame = 0


Query: 13  FFFLFFIIFILSSDNTRRCSSAESGSGHAHTQPISNLEDQELTLSRRGLSRLGSSPPNCD 72
           FFF+F II  +      +  +AE  S      P  N E  E+   RR   R+GS PP+C+
Sbjct: 11  FFFVFPIIIYIGPAEIIKPQAAEENSRRRILNPNENKE--EIVKRRR---RIGSKPPSCE 70

Query: 73  SKCGSCTPCTTV----LVSVPPGPSGVGDDFPKVWRCKC 108
            KC  C PC  +    + S+P       +  P+ WRC C
Sbjct: 71  KKCYGCEPCEAIQFPTISSIPHLSPHYANYQPEGWRCHC 104

The following BLAST results are available for this feature:

BLAST of Csor.00g017410.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1PEY6	2.5e-16	64.91	EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q2V3I3	2.2e-12	60.00	EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LUH9	4.5e-10	36.89	EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
C4B8C4	3.1e-06	33.33	EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q8S8I4	2.2e-04	30.48	Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE...	[more]

BLAST of Csor.00g017410.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583319.1	2.31e-81	100.00	EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subs...	[more]
KAG6583317.1	9.57e-76	96.49	EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subs...	[more]
KAG6583316.1	1.59e-74	95.61	EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subs...	[more]
KAG6583645.1	1.42e-68	86.84	EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subs...	[more]
KAG6583315.1	4.75e-67	85.96	EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Csor.00g017410.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXR9	2.51e-29	46.31	Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G533...	[more]
A0A5D3BE35	4.55e-27	56.52	Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1G964	5.26e-25	45.45	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KAS0	7.05e-25	45.45	Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1G961	2.54e-23	44.03	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Csor.00g017410.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30370.1	1.8e-17	64.91	allergen-related	[more]
AT2G30370.2	1.8e-17	64.91	allergen-related	[more]
AT4G14723.1	1.5e-13	60.00	BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1);...	[more]
AT3G22820.1	3.2e-11	36.89	allergen-related	[more]
AT3G13898.1	2.2e-07	33.33	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 63..114 e-value: 6.6E-18 score: 64.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..51
None	No IPR available	PANTHER	PTHR33109:SF4	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 6	coord: 16..114
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 16..114

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g017410	Csor.00g017410	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g017410.m01.CDS02	Csor.00g017410.m01.CDS02	CDS
Csor.00g017410.m01.CDS01	Csor.00g017410.m01.CDS01	CDS

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g017410.m01.initial01	Csor.00g017410.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g017410.m01.start_codon01	Csor.00g017410.m01.start_codon01	start_codon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g017410.m01.intron01	Csor.00g017410.m01.intron01	intron

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g017410.m01.terminal01	Csor.00g017410.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g017410.m01.stop_codon01	Csor.00g017410.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g017410.m01	Csor.00g017410.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010374	stomatal complex development